Wall clock time and date at job start Tue Mar 31 2020 13:23:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53007 * 109.46966 * 2 1
4 4 H 1.09002 * 109.46981 * 305.65551 * 3 2 1
5 5 C 1.50701 * 109.47148 * 185.65696 * 3 2 1
6 6 H 1.08002 * 119.99459 * 240.00257 * 5 3 2
7 7 C 1.37869 * 120.00199 * 59.99415 * 5 3 2
8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 3
9 9 Si 1.86803 * 120.00135 * 180.02562 * 7 5 3
10 10 H 1.48492 * 109.47023 * 60.00237 * 9 7 5
11 11 H 1.48500 * 109.47396 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.47060 * 300.00416 * 9 7 5
13 13 N 1.46903 * 109.47098 * 65.65175 * 3 2 1
14 14 C 1.46897 * 110.99980 * 205.60439 * 13 3 2
15 15 C 1.50694 * 109.47244 * 183.19944 * 14 13 3
16 16 C 1.39242 * 119.48978 * 259.72913 * 15 14 13
17 17 C 1.36276 * 120.91850 * 180.25331 * 16 15 14
18 18 Cl 1.73602 * 120.14665 * 179.97438 * 17 16 15
19 19 C 1.40542 * 119.70361 * 0.04341 * 17 16 15
20 20 C 1.40743 * 121.36286 * 179.97438 * 19 17 16
21 21 C 1.36586 * 118.15161 * 180.02562 * 20 19 17
22 22 C 1.39322 * 119.92484 * 359.97438 * 21 20 19
23 23 N 1.31089 * 121.73410 * 359.97438 * 22 21 20
24 24 C 1.33611 * 121.32637 * 0.02562 * 23 22 21
25 25 C 1.36559 * 119.48991 * 79.99834 * 15 14 13
26 26 O 1.35877 * 120.16540 * 359.74949 * 25 15 14
27 27 H 1.09003 * 109.47610 * 295.44099 * 1 2 3
28 28 H 1.09003 * 109.47103 * 55.44167 * 1 2 3
29 29 H 1.09003 * 109.47062 * 175.43890 * 1 2 3
30 30 H 1.09001 * 109.47312 * 239.99926 * 2 1 3
31 31 H 1.09000 * 109.47337 * 119.99333 * 2 1 3
32 32 H 0.97002 * 120.00287 * 179.97438 * 8 7 5
33 33 H 1.00894 * 111.00131 * 329.56277 * 13 3 2
34 34 H 1.08997 * 109.47052 * 63.19766 * 14 13 3
35 35 H 1.09002 * 109.47168 * 303.19908 * 14 13 3
36 36 H 1.07996 * 119.53853 * 0.25151 * 16 15 14
37 37 H 1.08001 * 120.92286 * 359.97438 * 20 19 17
38 38 H 1.08006 * 120.03466 * 179.97438 * 21 20 19
39 39 H 1.08000 * 119.13382 * 180.02562 * 22 21 20
40 40 H 0.96707 * 113.99816 * 89.99979 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5962 1.9848 -0.8350
5 6 3.5404 1.4449 -0.1401
6 1 4.1540 1.8866 0.6313
7 6 4.1298 0.8832 -1.2526
8 7 3.3827 0.3458 -2.1920
9 14 5.9898 0.8855 -1.4259
10 1 6.5938 0.1465 -0.2883
11 1 6.3690 0.2270 -2.7017
12 1 6.4853 2.2854 -1.4256
13 7 1.6648 2.0946 1.2618
14 6 1.5702 3.5509 1.0941
15 6 1.2615 4.1906 2.4231
16 6 -0.0453 4.5749 2.7118
17 6 -0.3562 5.1606 3.9024
18 17 -1.9921 5.6324 4.2411
19 6 0.6538 5.3821 4.8542
20 6 0.3721 5.9845 6.0946
21 6 1.4036 6.1690 6.9706
22 6 2.6907 5.7634 6.6240
23 7 2.9488 5.2017 5.4680
24 6 1.9849 4.9927 4.5666
25 6 2.2687 4.3895 3.3236
26 8 3.5379 4.0081 3.0236
27 1 -0.3634 0.4415 0.9280
28 1 -0.3633 0.5830 -0.8464
29 1 -0.3633 -1.0244 -0.0817
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5137 0.8900
32 1 3.7973 -0.0491 -2.9750
33 1 0.8022 1.7153 1.6223
34 1 0.7756 3.7841 0.3853
35 1 2.5178 3.9355 0.7171
36 1 -0.8234 4.4066 1.9820
37 1 -0.6318 6.2932 6.3464
38 1 1.2218 6.6287 7.9308
39 1 3.4968 5.9150 7.3265
40 1 4.0615 4.6934 2.5862
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255156383.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:23:12
Heat of formation + Delta-G solvation = 4.238658 kcal
Electronic energy + Delta-G solvation = -24218.339158 eV
Core-core repulsion = 20637.908826 eV
Total energy + Delta-G solvation = -3580.430332 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.103 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.10887 -38.36835 -37.20022 -36.31451 -35.63817 -33.09373 -32.63865 -31.51700
-30.21293 -29.05943 -26.79206 -25.13761 -24.21068 -22.87565 -22.21754 -21.60418
-19.55746 -18.55971 -17.87857 -17.23916 -16.63789 -16.22476 -15.22618 -15.04228
-14.91446 -14.72249 -14.13566 -14.10744 -13.81694 -13.41993 -13.16315 -12.87284
-12.84730 -12.54038 -12.28435 -12.21522 -11.80391 -11.39014 -11.18881 -10.97911
-10.84518 -10.79560 -10.62276 -10.44960 -10.41083 -9.91503 -9.73093 -9.64301
-9.59546 -9.08034 -8.86668 -8.30506 -8.00812 -7.20637 -5.92658 -3.96022
0.17807 0.60498 1.72734 1.89190 2.69866 3.37572 3.41704 3.46191
3.83547 4.04167 4.21008 4.49051 4.51031 4.58801 4.71785 4.81891
5.05512 5.20046 5.34305 5.40768 5.45035 5.64543 5.72704 5.78767
5.88435 6.04271 6.13312 6.17194 6.18983 6.36977 6.43039 6.50323
6.59402 6.85486 7.08411 7.19340 7.48381 7.69599 7.79943 7.96522
7.98491 8.29407 8.41639 8.76546 9.13405 9.68779 11.12814
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.015718 B = 0.003726 C = 0.003148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1780.945288 B = 7512.734942 C = 8892.179015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.126 4.126
3 C 0.220 3.780
4 H 0.002 0.998
5 C -0.490 4.490
6 H 0.065 0.935
7 C 0.054 3.946
8 N -0.899 5.899
9 Si 0.895 3.105
10 H -0.277 1.277
11 H -0.290 1.290
12 H -0.279 1.279
13 N -0.672 5.672
14 C 0.113 3.887
15 C -0.085 4.085
16 C -0.072 4.072
17 C -0.038 4.038
18 Cl -0.066 7.066
19 C -0.086 4.086
20 C -0.060 4.060
21 C -0.171 4.171
22 C 0.123 3.877
23 N -0.451 5.451
24 C 0.110 3.890
25 C 0.172 3.828
26 O -0.455 6.455
27 H 0.034 0.966
28 H 0.042 0.958
29 H 0.037 0.963
30 H 0.100 0.900
31 H 0.041 0.959
32 H 0.259 0.741
33 H 0.316 0.684
34 H 0.027 0.973
35 H 0.088 0.912
36 H 0.140 0.860
37 H 0.141 0.859
38 H 0.138 0.862
39 H 0.160 0.840
40 H 0.389 0.611
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.268 13.029 14.500 21.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.164 4.164
3 C 0.113 3.887
4 H 0.019 0.981
5 C -0.528 4.528
6 H 0.084 0.916
7 C -0.146 4.146
8 N -0.539 5.539
9 Si 0.724 3.276
10 H -0.203 1.203
11 H -0.216 1.216
12 H -0.205 1.205
13 N -0.303 5.303
14 C -0.017 4.017
15 C -0.088 4.088
16 C -0.091 4.091
17 C -0.066 4.066
18 Cl -0.037 7.037
19 C -0.089 4.089
20 C -0.086 4.086
21 C -0.191 4.191
22 C -0.050 4.050
23 N -0.159 5.159
24 C -0.013 4.013
25 C 0.124 3.876
26 O -0.264 6.264
27 H 0.053 0.947
28 H 0.061 0.939
29 H 0.056 0.944
30 H 0.118 0.882
31 H 0.060 0.940
32 H 0.069 0.931
33 H 0.133 0.867
34 H 0.045 0.955
35 H 0.107 0.893
36 H 0.157 0.843
37 H 0.159 0.841
38 H 0.156 0.844
39 H 0.178 0.822
40 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -7.047 12.147 14.494 20.181
hybrid contribution -0.783 0.731 -0.512 1.187
sum -7.830 12.878 13.982 20.558
Atomic orbital electron populations
1.21885 0.99665 0.99720 0.99482 1.21772 0.91163 1.00343 1.03151
1.19179 0.95673 0.89941 0.83872 0.98075 1.21218 0.91193 1.36329
1.04108 0.91645 1.24955 0.98002 0.95726 0.95911 1.69863 1.34725
1.39725 1.09607 0.86606 0.85903 0.78097 0.77018 1.20310 1.21630
1.20482 1.60705 1.36239 1.00424 1.32975 1.20674 1.01117 0.90896
0.88973 1.20157 0.91721 0.98857 0.98079 1.20735 0.96680 0.96329
0.95353 1.20447 0.85317 1.04783 0.96011 1.98350 1.19209 1.90888
1.95289 1.18404 0.93127 1.01914 0.95436 1.21466 1.00267 0.94999
0.91877 1.21901 0.93993 1.02154 1.01061 1.23031 0.95977 0.92616
0.93330 1.68079 1.34091 1.11595 1.02094 1.19239 0.88456 0.98317
0.95275 1.17743 0.86716 0.93590 0.89535 1.84943 1.20124 1.40772
1.80577 0.94673 0.93897 0.94391 0.88168 0.93999 0.93120 0.86660
0.95500 0.89344 0.84256 0.84103 0.84386 0.82235 0.75389
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.88 9.67 37.16 0.36 -2.52 16
2 C -0.13 -2.95 5.36 -26.73 -0.14 -3.09 16
3 C 0.22 5.36 2.02 -68.86 -0.14 5.22 16
4 H 0.00 0.04 7.83 -51.93 -0.41 -0.36 16
5 C -0.49 -13.30 8.59 -34.44 -0.30 -13.59 16
6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16
7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16
8 N -0.90 -25.36 11.29 55.43 0.63 -24.74 16
9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16
10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
13 N -0.67 -14.02 6.27 -109.22 -0.68 -14.70 16
14 C 0.11 2.01 5.19 -4.98 -0.03 1.99 16
15 C -0.08 -1.32 5.40 -104.86 -0.57 -1.88 16
16 C -0.07 -0.96 9.33 -39.91 -0.37 -1.33 16
17 C -0.04 -0.48 6.32 -39.42 -0.25 -0.73 16
18 Cl -0.07 -0.71 27.55 -51.86 -1.43 -2.13 16
19 C -0.09 -1.13 5.74 -106.79 -0.61 -1.74 16
20 C -0.06 -0.63 9.53 -39.23 -0.37 -1.00 16
21 C -0.17 -1.53 10.03 -39.78 -0.40 -1.93 16
22 C 0.12 1.30 11.15 -17.47 -0.19 1.11 16
23 N -0.45 -6.50 10.13 -10.89 -0.11 -6.61 16
24 C 0.11 1.65 6.62 -84.73 -0.56 1.09 16
25 C 0.17 2.76 6.68 -39.12 -0.26 2.50 16
26 O -0.45 -7.74 12.43 -19.35 -0.24 -7.98 16
27 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16
28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16
31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16
32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
33 H 0.32 6.17 6.60 -39.30 -0.26 5.91 16
34 H 0.03 0.46 7.95 -51.93 -0.41 0.04 16
35 H 0.09 1.69 7.62 -51.93 -0.40 1.29 16
36 H 0.14 1.64 8.01 -52.49 -0.42 1.22 16
37 H 0.14 1.19 7.06 -52.49 -0.37 0.82 16
38 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16
39 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16
40 H 0.39 4.95 9.06 45.56 0.41 5.37 16
LS Contribution 348.78 15.07 5.26 5.26
Total: -1.00 -31.00 348.78 -9.70 -40.70
By element:
Atomic # 1 Polarization: 12.41 SS G_CDS: -4.16 Total: 8.25 kcal
Atomic # 6 Polarization: -10.60 SS G_CDS: -3.93 Total: -14.53 kcal
Atomic # 7 Polarization: -45.88 SS G_CDS: -0.17 Total: -46.05 kcal
Atomic # 8 Polarization: -7.74 SS G_CDS: -0.24 Total: -7.98 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Atomic # 17 Polarization: -0.71 SS G_CDS: -1.43 Total: -2.13 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -31.00 -9.70 -40.70 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255156383.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.934 kcal
(2) G-P(sol) polarization free energy of solvation -31.000 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.934 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds