Wall clock time and date at job start Tue Mar 31 2020 13:23:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53007 * 109.46966 * 2 1
4 4 H 1.09002 * 109.46981 * 305.65551 * 3 2 1
5 5 C 1.50701 * 109.47148 * 185.65696 * 3 2 1
6 6 H 1.08002 * 119.99459 * 240.00257 * 5 3 2
7 7 C 1.37869 * 120.00199 * 59.99415 * 5 3 2
8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 3
9 9 Si 1.86803 * 120.00135 * 180.02562 * 7 5 3
10 10 H 1.48492 * 109.47023 * 60.00237 * 9 7 5
11 11 H 1.48500 * 109.47396 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.47060 * 300.00416 * 9 7 5
13 13 N 1.46903 * 109.47098 * 65.65175 * 3 2 1
14 14 C 1.46897 * 110.99980 * 205.60439 * 13 3 2
15 15 C 1.50694 * 109.47244 * 183.19944 * 14 13 3
16 16 C 1.39242 * 119.48978 * 259.72913 * 15 14 13
17 17 C 1.36276 * 120.91850 * 180.25331 * 16 15 14
18 18 Cl 1.73602 * 120.14665 * 179.97438 * 17 16 15
19 19 C 1.40542 * 119.70361 * 0.04341 * 17 16 15
20 20 C 1.40743 * 121.36286 * 179.97438 * 19 17 16
21 21 C 1.36586 * 118.15161 * 180.02562 * 20 19 17
22 22 C 1.39322 * 119.92484 * 359.97438 * 21 20 19
23 23 N 1.31089 * 121.73410 * 359.97438 * 22 21 20
24 24 C 1.33611 * 121.32637 * 0.02562 * 23 22 21
25 25 C 1.36559 * 119.48991 * 79.99834 * 15 14 13
26 26 O 1.35877 * 120.16540 * 359.74949 * 25 15 14
27 27 H 1.09003 * 109.47610 * 295.44099 * 1 2 3
28 28 H 1.09003 * 109.47103 * 55.44167 * 1 2 3
29 29 H 1.09003 * 109.47062 * 175.43890 * 1 2 3
30 30 H 1.09001 * 109.47312 * 239.99926 * 2 1 3
31 31 H 1.09000 * 109.47337 * 119.99333 * 2 1 3
32 32 H 0.97002 * 120.00287 * 179.97438 * 8 7 5
33 33 H 1.00894 * 111.00131 * 329.56277 * 13 3 2
34 34 H 1.08997 * 109.47052 * 63.19766 * 14 13 3
35 35 H 1.09002 * 109.47168 * 303.19908 * 14 13 3
36 36 H 1.07996 * 119.53853 * 0.25151 * 16 15 14
37 37 H 1.08001 * 120.92286 * 359.97438 * 20 19 17
38 38 H 1.08006 * 120.03466 * 179.97438 * 21 20 19
39 39 H 1.08000 * 119.13382 * 180.02562 * 22 21 20
40 40 H 0.96707 * 113.99816 * 89.99979 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5962 1.9848 -0.8350
5 6 3.5404 1.4449 -0.1401
6 1 4.1540 1.8866 0.6313
7 6 4.1298 0.8832 -1.2526
8 7 3.3827 0.3458 -2.1920
9 14 5.9898 0.8855 -1.4259
10 1 6.5938 0.1465 -0.2883
11 1 6.3690 0.2270 -2.7017
12 1 6.4853 2.2854 -1.4256
13 7 1.6648 2.0946 1.2618
14 6 1.5702 3.5509 1.0941
15 6 1.2615 4.1906 2.4231
16 6 -0.0453 4.5749 2.7118
17 6 -0.3562 5.1606 3.9024
18 17 -1.9921 5.6324 4.2411
19 6 0.6538 5.3821 4.8542
20 6 0.3721 5.9845 6.0946
21 6 1.4036 6.1690 6.9706
22 6 2.6907 5.7634 6.6240
23 7 2.9488 5.2017 5.4680
24 6 1.9849 4.9927 4.5666
25 6 2.2687 4.3895 3.3236
26 8 3.5379 4.0081 3.0236
27 1 -0.3634 0.4415 0.9280
28 1 -0.3633 0.5830 -0.8464
29 1 -0.3633 -1.0244 -0.0817
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5137 0.8900
32 1 3.7973 -0.0491 -2.9750
33 1 0.8022 1.7153 1.6223
34 1 0.7756 3.7841 0.3853
35 1 2.5178 3.9355 0.7171
36 1 -0.8234 4.4066 1.9820
37 1 -0.6318 6.2932 6.3464
38 1 1.2218 6.6287 7.9308
39 1 3.4968 5.9150 7.3265
40 1 4.0615 4.6934 2.5862
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255156383.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:23:11
Heat of formation + Delta-G solvation = -16.804015 kcal
Electronic energy + Delta-G solvation = -24219.251637 eV
Core-core repulsion = 20637.908826 eV
Total energy + Delta-G solvation = -3581.342811 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.103 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.08761 -39.48804 -38.19157 -37.93622 -36.79353 -34.56577 -33.84976 -33.18104
-31.42155 -30.21713 -28.56175 -26.58828 -25.15947 -24.53295 -23.37548 -22.80091
-21.44479 -19.61786 -18.89301 -18.37655 -18.19283 -17.62629 -16.78958 -16.34683
-16.22320 -15.84693 -15.61960 -15.30767 -15.12782 -14.73967 -14.26676 -14.13145
-14.01961 -14.00432 -13.69745 -13.33859 -13.15920 -13.06701 -12.81589 -12.68207
-12.50566 -12.05030 -11.94724 -11.89472 -11.68686 -11.51367 -11.36184 -11.29893
-11.01126 -10.55204 -10.39243 -9.87865 -9.04837 -8.94956 -8.02721 -6.13292
-0.76845 -0.34905 0.78800 0.92974 1.43197 1.45134 1.52709 1.71697
2.47185 2.88834 3.05375 3.22429 3.24556 3.52558 3.67426 3.80890
3.87538 3.97991 4.20034 4.26755 4.42151 4.50153 4.53531 4.58128
4.69490 4.72907 4.75774 4.87129 4.95655 5.11579 5.15743 5.21401
5.29795 5.32857 5.39904 5.60824 5.66462 5.79070 5.92078 6.39412
6.52524 6.74448 6.95078 6.99084 7.00793 7.55139 9.00203
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.015718 B = 0.003726 C = 0.003148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1780.945288 B = 7512.734942 C = 8892.179015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.121 4.121
3 C 0.228 3.772
4 H -0.026 1.026
5 C -0.505 4.505
6 H 0.050 0.950
7 C 0.011 3.989
8 N -0.921 5.921
9 Si 0.952 3.048
10 H -0.278 1.278
11 H -0.285 1.285
12 H -0.273 1.273
13 N -0.676 5.676
14 C 0.120 3.880
15 C -0.092 4.092
16 C -0.080 4.080
17 C -0.031 4.031
18 Cl -0.044 7.044
19 C -0.097 4.097
20 C -0.065 4.065
21 C -0.153 4.153
22 C 0.125 3.875
23 N -0.492 5.492
24 C 0.090 3.910
25 C 0.152 3.848
26 O -0.480 6.480
27 H 0.055 0.945
28 H 0.040 0.960
29 H 0.056 0.944
30 H 0.069 0.931
31 H 0.031 0.969
32 H 0.259 0.741
33 H 0.325 0.675
34 H 0.035 0.965
35 H 0.067 0.933
36 H 0.153 0.847
37 H 0.164 0.836
38 H 0.184 0.816
39 H 0.193 0.807
40 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.481 14.401 17.051 24.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.160 4.160
3 C 0.120 3.880
4 H -0.008 1.008
5 C -0.544 4.544
6 H 0.069 0.931
7 C -0.187 4.187
8 N -0.561 5.561
9 Si 0.779 3.221
10 H -0.204 1.204
11 H -0.210 1.210
12 H -0.198 1.198
13 N -0.308 5.308
14 C -0.009 4.009
15 C -0.095 4.095
16 C -0.099 4.099
17 C -0.058 4.058
18 Cl -0.014 7.014
19 C -0.100 4.100
20 C -0.091 4.091
21 C -0.172 4.172
22 C -0.047 4.047
23 N -0.200 5.200
24 C -0.032 4.032
25 C 0.105 3.895
26 O -0.291 6.291
27 H 0.074 0.926
28 H 0.059 0.941
29 H 0.075 0.925
30 H 0.087 0.913
31 H 0.050 0.950
32 H 0.068 0.932
33 H 0.143 0.857
34 H 0.053 0.947
35 H 0.085 0.915
36 H 0.171 0.829
37 H 0.181 0.819
38 H 0.201 0.799
39 H 0.210 0.790
40 H 0.257 0.743
Dipole moment (debyes) X Y Z Total
from point charges -8.276 13.536 17.053 23.292
hybrid contribution -0.427 0.424 -1.114 1.266
sum -8.703 13.960 15.940 22.906
Atomic orbital electron populations
1.21743 0.96187 1.01149 1.00501 1.21598 0.94301 0.99094 1.01027
1.18932 0.94134 0.90535 0.84430 1.00805 1.21448 0.92822 1.36254
1.03876 0.93133 1.25622 1.01911 0.95487 0.95691 1.69986 1.36107
1.40178 1.09866 0.85702 0.81248 0.78265 0.76893 1.20406 1.21036
1.19794 1.60551 1.36981 1.02190 1.31074 1.20520 1.00332 0.89137
0.90936 1.19866 0.92858 0.99999 0.96822 1.20753 0.95951 0.96922
0.96291 1.20490 0.86335 1.03560 0.95450 1.98356 1.17401 1.90565
1.95123 1.18624 0.92383 1.02187 0.96769 1.21804 1.01894 0.94518
0.90900 1.22376 0.92556 1.00079 1.02228 1.23752 0.97972 0.90569
0.92417 1.68068 1.34704 1.13676 1.03600 1.19233 0.89621 0.99175
0.95129 1.17970 0.86187 0.94748 0.90633 1.84882 1.21164 1.42125
1.80972 0.92562 0.94109 0.92538 0.91256 0.95003 0.93178 0.85692
0.94651 0.91504 0.82913 0.81876 0.79904 0.79011 0.74266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.22 9.67 71.98 0.70 -4.53 16
2 C -0.12 -5.83 5.36 30.60 0.16 -5.67 16
3 C 0.23 11.48 2.02 44.17 0.09 11.57 16
4 H -0.03 -1.41 7.83 -2.39 -0.02 -1.42 16
5 C -0.51 -28.48 8.59 25.60 0.22 -28.26 16
6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16
7 C 0.01 0.60 5.29 84.65 0.45 1.05 16
8 N -0.92 -53.31 11.29 21.44 0.24 -53.07 16
9 Si 0.95 45.05 29.54 68.60 2.03 47.08 16
10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16
13 N -0.68 -29.06 6.27 -499.46 -3.13 -32.19 16
14 C 0.12 4.47 5.19 85.56 0.44 4.91 16
15 C -0.09 -2.94 5.40 -20.02 -0.11 -3.05 16
16 C -0.08 -2.10 9.33 22.05 0.21 -1.90 16
17 C -0.03 -0.73 6.32 22.37 0.14 -0.59 16
18 Cl -0.04 -0.82 27.55 -2.72 -0.07 -0.89 16
19 C -0.10 -2.39 5.74 -21.27 -0.12 -2.51 16
20 C -0.07 -1.15 9.53 22.50 0.21 -0.93 16
21 C -0.15 -2.09 10.03 22.14 0.22 -1.87 16
22 C 0.13 2.29 11.15 85.06 0.95 3.24 16
23 N -0.49 -13.81 10.13 -188.35 -1.91 -15.72 16
24 C 0.09 2.70 6.62 40.40 0.27 2.97 16
25 C 0.15 5.06 6.68 22.57 0.15 5.21 16
26 O -0.48 -17.36 12.43 -92.16 -1.15 -18.50 16
27 H 0.06 1.87 6.61 -2.39 -0.02 1.86 16
28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
30 H 0.07 3.77 5.94 -2.39 -0.01 3.76 16
31 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16
32 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16
33 H 0.32 12.76 6.60 -89.70 -0.59 12.17 16
34 H 0.04 1.24 7.95 -2.39 -0.02 1.22 16
35 H 0.07 2.74 7.62 -2.39 -0.02 2.72 16
36 H 0.15 3.46 8.01 -2.91 -0.02 3.43 16
37 H 0.16 2.08 7.06 -2.91 -0.02 2.06 16
38 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16
39 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16
40 H 0.40 11.24 9.06 -74.05 -0.67 10.57 16
Total: -1.00 -69.43 348.78 -0.18 -69.61
By element:
Atomic # 1 Polarization: 24.20 SS G_CDS: -0.17 Total: 24.03 kcal
Atomic # 6 Polarization: -24.33 SS G_CDS: 3.98 Total: -20.35 kcal
Atomic # 7 Polarization: -96.18 SS G_CDS: -4.80 Total: -100.98 kcal
Atomic # 8 Polarization: -17.36 SS G_CDS: -1.15 Total: -18.50 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.89 kcal
Total: -69.43 -0.18 -69.61 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255156383.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal
(2) G-P(sol) polarization free energy of solvation -69.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.804 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds