Wall clock time and date at job start Tue Mar 31 2020 12:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31787 * 122.74805 * 2 1 4 4 C 1.29029 * 117.12293 * 179.97438 * 3 2 1 5 5 S 1.70975 * 110.16681 * 359.73179 * 4 3 2 6 6 C 1.33633 * 122.75268 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.03755 * 0.02562 * 6 2 1 8 8 C 1.52999 * 109.47508 * 89.99392 * 7 6 2 9 9 C 1.50696 * 109.47203 * 179.97438 * 8 7 6 10 10 O 1.21294 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.40158 * 119.99807 * 180.02562 * 11 9 8 13 13 C 1.40410 * 125.97643 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.86643 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.86346 * 359.97438 * 14 13 12 16 16 C 1.46502 * 125.97705 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47042 * 124.98359 * 16 15 14 18 18 H 1.07998 * 120.00465 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99717 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46973 * 60.00302 * 21 19 17 23 23 H 1.48501 * 109.46659 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47252 * 299.99917 * 21 19 17 25 25 N 1.31224 * 125.97071 * 179.97438 * 12 11 9 26 26 H 1.09001 * 109.46776 * 269.99641 * 1 2 3 27 27 H 1.08998 * 109.46903 * 29.99408 * 1 2 3 28 28 H 1.09001 * 109.46934 * 149.99777 * 1 2 3 29 29 H 1.07998 * 124.91165 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47024 * 329.99361 * 7 6 2 31 31 H 1.08999 * 109.47323 * 210.00229 * 7 6 2 32 32 H 1.08999 * 109.46938 * 60.00420 * 8 7 6 33 33 H 1.09000 * 109.46796 * 300.00126 * 8 7 6 34 34 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 35 35 H 1.07998 * 126.06328 * 0.02562 * 13 12 11 36 36 H 1.07999 * 126.06766 * 179.97438 * 14 13 12 37 37 H 1.09004 * 109.47046 * 244.98445 * 16 15 14 38 38 H 1.08995 * 109.47139 * 4.98480 * 16 15 14 39 39 H 0.97008 * 119.99677 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 16 3.9333 -0.6730 0.0086 6 6 2.2300 -1.1239 -0.0005 7 6 1.6848 -2.5288 -0.0017 8 6 1.5006 -3.0033 -1.4445 9 6 0.9560 -4.4084 -1.4456 10 8 0.7363 -4.9745 -0.3956 11 7 0.7122 -5.0357 -2.6133 12 6 0.2051 -6.3424 -2.6143 13 6 -0.0936 -7.1120 -1.4785 14 6 -0.5590 -8.3099 -1.8998 15 7 -0.5573 -8.3033 -3.2494 16 6 -0.9859 -9.4041 -4.1160 17 6 -2.0436 -8.9105 -5.0692 18 1 -2.3642 -7.8798 -5.0335 19 6 -2.6020 -9.7747 -5.9870 20 7 -2.2119 -11.0299 -6.0302 21 14 -3.9126 -9.1626 -7.1691 22 1 -3.3553 -8.0663 -8.0015 23 1 -4.3470 -10.2785 -8.0473 24 1 -5.0767 -8.6564 -6.3985 25 7 -0.0742 -7.0599 -3.6768 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 4.2059 1.8027 0.0002 30 1 0.7235 -2.5459 0.5119 31 1 2.3828 -3.1899 0.5120 32 1 2.4619 -2.9863 -1.9580 33 1 0.8025 -2.3422 -1.9580 34 1 0.8875 -4.5828 -3.4530 35 1 0.0262 -6.8021 -0.4510 36 1 -0.8758 -9.1268 -1.2683 37 1 -0.1312 -9.7749 -4.6819 38 1 -1.3944 -10.2093 -3.5054 39 1 -2.6051 -11.6380 -6.6757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361299607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:55 Heat of formation + Delta-G solvation = 80.959642 kcal Electronic energy + Delta-G solvation = -22819.966399 eV Core-core repulsion = 19277.199396 eV Total energy + Delta-G solvation = -3542.767003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75782 -40.26281 -39.32314 -35.00151 -34.54837 -33.37355 -31.50885 -30.83951 -29.35808 -28.21309 -26.64639 -25.36722 -24.03214 -22.87220 -21.40113 -20.18099 -19.58303 -19.15793 -18.46617 -17.07940 -16.65512 -16.55045 -16.10257 -15.47632 -15.44483 -15.09511 -14.44066 -14.19749 -14.08400 -13.86930 -13.46433 -13.07165 -12.90509 -12.74171 -12.70276 -12.41323 -12.35153 -12.25107 -11.91562 -11.75453 -11.17363 -11.08064 -10.88021 -10.48116 -10.27583 -10.07016 -9.98480 -9.72023 -9.54440 -9.52184 -9.04553 -8.64985 -8.16765 -7.50697 -6.26277 -4.31527 0.33966 1.01163 1.39978 2.26686 2.41776 2.75565 2.89928 3.24101 3.27521 3.31848 3.68302 3.81043 3.90107 4.29510 4.39432 4.57140 4.65189 4.78257 4.90575 4.96337 5.08861 5.17803 5.31030 5.39782 5.52444 5.53804 5.64602 5.69321 5.78035 5.97720 6.23589 6.45588 6.56888 6.83377 7.02694 7.36867 7.37300 7.52830 7.68522 7.86396 8.01507 8.19289 8.60217 8.77492 9.34089 10.82404 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.025567 B = 0.002103 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.898514 B =13309.873367 C =13809.764438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.061 3.939 3 N -0.468 5.468 4 C 0.016 3.984 5 S 0.119 5.881 6 C -0.216 4.216 7 C -0.026 4.026 8 C -0.132 4.132 9 C 0.519 3.481 10 O -0.518 6.518 11 N -0.631 5.631 12 C 0.255 3.745 13 C -0.287 4.287 14 C 0.051 3.949 15 N -0.318 5.318 16 C 0.258 3.742 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.304 5.304 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.198 0.802 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.411 0.589 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 20.399 12.275 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 N -0.181 5.181 4 C -0.282 4.282 5 S 0.373 5.627 6 C -0.337 4.337 7 C -0.066 4.066 8 C -0.173 4.173 9 C 0.305 3.695 10 O -0.392 6.392 11 N -0.278 5.278 12 C 0.002 3.998 13 C -0.319 4.319 14 C -0.099 4.099 15 N -0.100 5.100 16 C 0.141 3.859 17 C -0.568 4.568 18 H 0.086 0.914 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 N -0.135 5.135 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.215 0.785 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.246 0.754 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.612 19.729 11.598 25.663 hybrid contribution -1.332 0.552 -0.374 1.489 sum 10.281 20.281 11.224 25.357 Atomic orbital electron populations 1.20412 0.86910 1.03572 1.03214 1.20294 0.98363 0.86120 1.02274 1.66197 1.05067 1.31659 1.15227 1.28285 0.95245 1.00078 1.04570 1.84126 1.07164 1.03592 1.67792 1.25731 0.94952 1.00643 1.12356 1.19771 1.02871 0.88163 0.95807 1.21648 1.03532 0.93092 0.99004 1.20539 0.77931 0.87948 0.83052 1.90657 1.50681 1.66740 1.31124 1.42507 1.63436 1.12127 1.09745 1.19133 1.00954 0.86432 0.93299 1.21516 1.16260 0.94343 0.99751 1.22575 1.01840 0.99620 0.85865 1.49095 1.45343 1.10933 1.04647 1.19750 0.96203 0.80708 0.89255 1.21206 1.20865 0.97447 1.17263 0.91376 1.24949 0.97199 0.94692 0.97243 1.69908 1.42919 1.03970 1.36516 0.86379 0.81308 0.78345 0.80418 1.19937 1.21025 1.20028 1.77336 1.22636 0.93491 1.20069 0.90469 0.90528 0.90387 0.78504 0.88454 0.89356 0.88335 0.88127 0.75356 0.82277 0.81477 0.93713 0.92511 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.82 36.01 0.35 -0.25 16 2 C 0.06 0.56 6.74 -84.22 -0.57 -0.01 16 3 N -0.47 -4.60 10.53 -11.90 -0.13 -4.72 16 4 C 0.02 0.12 12.23 51.59 0.63 0.75 16 5 S 0.12 0.83 23.22 -107.50 -2.50 -1.66 16 6 C -0.22 -1.80 5.84 -35.92 -0.21 -2.01 16 7 C -0.03 -0.22 4.44 -27.88 -0.12 -0.34 16 8 C -0.13 -1.07 5.68 -27.89 -0.16 -1.23 16 9 C 0.52 6.59 7.80 -10.99 -0.09 6.50 16 10 O -0.52 -8.17 13.11 5.55 0.07 -8.10 16 11 N -0.63 -9.08 5.45 -11.13 -0.06 -9.15 16 12 C 0.25 4.96 8.11 -154.38 -1.25 3.70 16 13 C -0.29 -5.55 9.61 -39.83 -0.38 -5.93 16 14 C 0.05 1.00 11.44 -17.24 -0.20 0.81 16 15 N -0.32 -7.31 3.67 -62.56 -0.23 -7.54 16 16 C 0.26 6.51 6.26 -5.19 -0.03 6.47 16 17 C -0.53 -14.61 9.24 -34.44 -0.32 -14.93 16 18 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 21 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 N -0.30 -6.89 12.42 31.44 0.39 -6.49 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.51 7.18 -51.93 -0.37 0.14 16 29 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.10 0.84 7.39 -51.93 -0.38 0.45 16 31 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.67 7.98 -51.93 -0.41 0.25 16 34 H 0.41 4.75 8.82 -40.82 -0.36 4.39 16 35 H 0.16 2.95 5.92 -52.49 -0.31 2.64 16 36 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -33.47 353.46 -8.61 -42.08 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.76 Total: 3.35 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.44 Total: -4.86 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.71 Total: -52.32 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.47 -8.61 -42.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361299607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.037 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds