Wall clock time and date at job start Tue Mar 31 2020 13:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 H 1.09000 * 109.46841 * 304.99522 * 3 2 1 5 5 C 1.50707 * 109.47037 * 184.99986 * 3 2 1 6 6 H 1.07998 * 119.99930 * 239.99846 * 5 3 2 7 7 C 1.37876 * 119.99926 * 59.99891 * 5 3 2 8 8 N 1.31512 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99744 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47130 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46701 * 120.00315 * 9 7 5 12 12 H 1.48497 * 109.47383 * 240.00032 * 9 7 5 13 13 N 1.46496 * 109.47109 * 64.99918 * 3 2 1 14 14 C 1.34777 * 119.99954 * 274.99908 * 13 3 2 15 15 O 1.21616 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.47424 * 119.99758 * 180.02562 * 14 13 3 17 17 N 1.36066 * 126.45042 * 0.26735 * 16 14 13 18 18 C 1.29933 * 108.47639 * 180.15608 * 17 16 14 19 19 O 1.34050 * 109.24333 * 359.61586 * 18 17 16 20 20 C 1.34261 * 108.23012 * 0.24268 * 19 18 17 21 21 C 1.50688 * 126.52906 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47491 * 270.02712 * 21 20 19 23 23 C 1.52997 * 109.47201 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47364 * 60.00049 * 23 22 21 25 25 F 1.39906 * 109.46884 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.47119 * 299.99832 * 23 22 21 27 27 H 1.08994 * 109.46960 * 299.99915 * 1 2 3 28 28 H 1.09001 * 109.47072 * 60.00207 * 1 2 3 29 29 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46793 * 239.99570 * 2 1 3 31 31 H 1.09000 * 109.46723 * 120.00480 * 2 1 3 32 32 H 0.97002 * 120.00145 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00116 * 95.00222 * 13 3 2 34 34 H 1.08002 * 125.38099 * 179.88540 * 18 17 16 35 35 H 1.09009 * 109.47310 * 30.02874 * 21 20 19 36 36 H 1.08998 * 109.47490 * 150.02511 * 21 20 19 37 37 H 1.08996 * 109.46812 * 300.00172 * 22 21 20 38 38 H 1.08998 * 109.46917 * 59.99448 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5988 1.5460 -0.1942 11 1 6.4970 -0.5178 -1.4629 12 1 6.3991 1.6164 -2.6101 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3416 2.6318 0.4317 16 6 0.0455 3.3240 2.6264 17 7 0.8080 3.4412 3.7472 18 6 0.1224 4.0808 4.6467 19 8 -1.0786 4.3989 4.1432 20 6 -1.1430 3.9346 2.8851 21 6 -2.3092 4.0644 1.9397 22 6 -3.2387 2.8608 2.1081 23 6 -4.4225 2.9924 1.1477 24 9 -3.9520 3.0376 -0.1690 25 9 -5.2721 1.8915 1.3013 26 9 -5.1255 4.1679 1.4324 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0605 -2.9503 33 1 2.2720 2.1231 1.9977 34 1 0.4673 4.3223 5.6412 35 1 -2.8569 4.9804 2.1619 36 1 -1.9431 4.1000 0.9137 37 1 -2.6911 1.9450 1.8858 38 1 -3.6049 2.8253 3.1341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362311426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:12 Heat of formation + Delta-G solvation = -183.669622 kcal Electronic energy + Delta-G solvation = -27732.721317 eV Core-core repulsion = 23161.576766 eV Total energy + Delta-G solvation = -4571.144551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.15982 -47.69447 -47.57962 -43.46841 -38.95007 -35.42178 -34.93974 -34.58340 -32.33445 -30.97945 -30.10985 -27.28343 -26.23793 -23.99767 -22.97748 -22.77454 -21.61657 -20.33710 -19.39985 -18.62297 -18.55757 -18.05767 -17.64439 -16.62886 -16.46608 -15.72805 -15.34074 -15.17712 -14.74240 -14.54672 -14.48268 -14.22794 -14.07841 -14.03573 -13.76332 -13.71632 -13.42929 -13.14626 -12.80760 -12.68399 -12.19108 -11.87420 -11.64436 -11.57577 -11.27160 -11.23343 -10.96329 -10.84799 -10.74613 -10.31970 -10.20195 -9.66212 -9.30874 -9.05631 -8.98260 -8.51230 -7.85713 -6.12827 -4.21752 1.08384 2.17446 2.38372 2.74544 3.24375 3.32428 3.35613 3.67870 3.78031 3.80587 3.93785 3.97071 4.18206 4.37968 4.55296 4.72434 4.80544 5.04672 5.18673 5.25703 5.33855 5.48579 5.73444 5.85079 6.13569 6.37169 6.43090 6.62871 7.01971 7.15360 7.31637 7.37997 7.42873 7.62686 7.73738 7.88708 8.15873 8.62896 8.74695 9.03929 9.45253 10.92647 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003822 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.181778 B = 7325.205539 C = 8620.856796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.683 5.683 14 C 0.580 3.420 15 O -0.540 6.540 16 C -0.045 4.045 17 N -0.460 5.460 18 C 0.172 3.828 19 O -0.202 6.202 20 C 0.019 3.981 21 C -0.039 4.039 22 C -0.161 4.161 23 C 0.457 3.543 24 F -0.172 7.172 25 F -0.185 7.185 26 F -0.187 7.187 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.023 0.977 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.397 0.603 34 H 0.254 0.746 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 6.620 12.549 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.330 5.330 14 C 0.363 3.637 15 O -0.420 6.420 16 C -0.166 4.166 17 N -0.189 5.189 18 C -0.056 4.056 19 O -0.088 6.088 20 C -0.037 4.037 21 C -0.076 4.076 22 C -0.199 4.199 23 C 0.403 3.597 24 F -0.153 7.153 25 F -0.166 7.166 26 F -0.168 7.168 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.269 0.731 35 H 0.113 0.887 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.592 6.256 11.727 18.309 hybrid contribution 0.622 0.243 0.347 0.752 sum -11.970 6.499 12.073 18.201 Atomic orbital electron populations 1.21842 0.98364 0.98135 1.01107 1.21940 0.92625 0.99643 1.02438 1.18893 0.94475 0.89267 0.80614 0.92978 1.21267 0.90608 1.38969 1.06349 0.91937 1.24868 0.98634 0.94751 0.95333 1.69898 1.35049 1.37697 1.09324 0.86398 0.84851 0.77777 0.78128 1.19705 1.20868 1.20880 1.46395 1.13918 1.53820 1.18829 1.16758 0.83572 0.79251 0.84129 1.90774 1.51824 1.60839 1.38532 1.22123 0.92154 1.06141 0.96181 1.70835 1.31730 1.16228 1.00113 1.28037 0.79220 0.97549 1.00824 1.84326 1.37298 1.61884 1.25323 1.23132 0.98224 0.98796 0.83572 1.20215 0.90710 0.97823 0.98901 1.22814 0.93939 1.03374 0.99770 1.20377 0.84352 0.73410 0.81575 1.93259 1.88073 1.96006 1.37997 1.93190 1.73433 1.54350 1.95622 1.93172 1.81157 1.49060 1.93458 0.94540 0.92919 0.95776 0.88109 0.94963 0.92600 0.76916 0.73055 0.88728 0.84930 0.86138 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.69 2.24 -69.08 -0.15 6.53 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.53 5.02 -56.01 -0.28 -14.81 16 14 C 0.58 11.42 6.38 -12.52 -0.08 11.34 16 15 O -0.54 -11.42 11.93 5.26 0.06 -11.36 16 16 C -0.05 -0.73 6.99 -83.02 -0.58 -1.31 16 17 N -0.46 -6.64 11.06 -11.48 -0.13 -6.77 16 18 C 0.17 1.73 13.19 51.96 0.69 2.42 16 19 O -0.20 -2.23 10.73 6.50 0.07 -2.16 16 20 C 0.02 0.24 6.69 -35.08 -0.23 0.01 16 21 C -0.04 -0.45 4.97 -27.89 -0.14 -0.59 16 22 C -0.16 -1.68 5.24 -26.73 -0.14 -1.82 16 23 C 0.46 5.20 3.16 37.16 0.12 5.31 16 24 F -0.17 -2.37 16.80 2.25 0.04 -2.33 16 25 F -0.18 -2.18 17.32 2.25 0.04 -2.15 16 26 F -0.19 -2.03 16.80 2.25 0.04 -2.00 16 27 H 0.04 0.75 5.64 -51.93 -0.29 0.46 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 2.67 5.95 -51.92 -0.31 2.36 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.40 7.98 8.27 -40.82 -0.34 7.64 16 34 H 0.25 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.09 0.86 7.80 -51.92 -0.41 0.46 16 36 H 0.13 1.82 6.14 -51.93 -0.32 1.50 16 37 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -30.25 334.55 -4.38 -34.63 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.12 Total: 6.78 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.75 Total: 3.36 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.22 Total: -45.39 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.13 Total: -13.52 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.25 -4.38 -34.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362311426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.039 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds