Wall clock time and date at job start Tue Mar 31 2020 13:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 H 1.09000 * 109.46841 * 304.99522 * 3 2 1 5 5 C 1.50707 * 109.47037 * 184.99986 * 3 2 1 6 6 H 1.07998 * 119.99930 * 239.99846 * 5 3 2 7 7 C 1.37876 * 119.99926 * 59.99891 * 5 3 2 8 8 N 1.31512 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99744 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47130 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46701 * 120.00315 * 9 7 5 12 12 H 1.48497 * 109.47383 * 240.00032 * 9 7 5 13 13 N 1.46496 * 109.47109 * 64.99918 * 3 2 1 14 14 C 1.34777 * 119.99954 * 274.99908 * 13 3 2 15 15 O 1.21616 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.47424 * 119.99758 * 180.02562 * 14 13 3 17 17 N 1.36066 * 126.45042 * 0.26735 * 16 14 13 18 18 C 1.29933 * 108.47639 * 180.15608 * 17 16 14 19 19 O 1.34050 * 109.24333 * 359.61586 * 18 17 16 20 20 C 1.34261 * 108.23012 * 0.24268 * 19 18 17 21 21 C 1.50688 * 126.52906 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47491 * 270.02712 * 21 20 19 23 23 C 1.52997 * 109.47201 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47364 * 60.00049 * 23 22 21 25 25 F 1.39906 * 109.46884 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.47119 * 299.99832 * 23 22 21 27 27 H 1.08994 * 109.46960 * 299.99915 * 1 2 3 28 28 H 1.09001 * 109.47072 * 60.00207 * 1 2 3 29 29 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46793 * 239.99570 * 2 1 3 31 31 H 1.09000 * 109.46723 * 120.00480 * 2 1 3 32 32 H 0.97002 * 120.00145 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00116 * 95.00222 * 13 3 2 34 34 H 1.08002 * 125.38099 * 179.88540 * 18 17 16 35 35 H 1.09009 * 109.47310 * 30.02874 * 21 20 19 36 36 H 1.08998 * 109.47490 * 150.02511 * 21 20 19 37 37 H 1.08996 * 109.46812 * 300.00172 * 22 21 20 38 38 H 1.08998 * 109.46917 * 59.99448 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5988 1.5460 -0.1942 11 1 6.4970 -0.5178 -1.4629 12 1 6.3991 1.6164 -2.6101 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3416 2.6318 0.4317 16 6 0.0455 3.3240 2.6264 17 7 0.8080 3.4412 3.7472 18 6 0.1224 4.0808 4.6467 19 8 -1.0786 4.3989 4.1432 20 6 -1.1430 3.9346 2.8851 21 6 -2.3092 4.0644 1.9397 22 6 -3.2387 2.8608 2.1081 23 6 -4.4225 2.9924 1.1477 24 9 -3.9520 3.0376 -0.1690 25 9 -5.2721 1.8915 1.3013 26 9 -5.1255 4.1679 1.4324 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0605 -2.9503 33 1 2.2720 2.1231 1.9977 34 1 0.4673 4.3223 5.6412 35 1 -2.8569 4.9804 2.1619 36 1 -1.9431 4.1000 0.9137 37 1 -2.6911 1.9450 1.8858 38 1 -3.6049 2.8253 3.1341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362311426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:11 Heat of formation + Delta-G solvation = -205.242945 kcal Electronic energy + Delta-G solvation = -27733.656807 eV Core-core repulsion = 23161.576766 eV Total energy + Delta-G solvation = -4572.080041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.10054 -48.60876 -48.56600 -44.44613 -40.55163 -37.06851 -35.98836 -35.70028 -34.23945 -32.76633 -31.15909 -29.10351 -27.36839 -25.46133 -24.50603 -23.77207 -22.76918 -21.72576 -21.16130 -19.69507 -19.53579 -19.30896 -18.58568 -18.06736 -17.58984 -17.26654 -16.87854 -16.27356 -16.16816 -16.01115 -15.57491 -15.43702 -15.14002 -15.00327 -14.76676 -14.73931 -14.64509 -14.61715 -14.33443 -13.88605 -13.71225 -13.48543 -13.18081 -12.89908 -12.79136 -12.71188 -12.49867 -12.36584 -12.15436 -12.06491 -11.74358 -11.58381 -11.05415 -10.89060 -10.53917 -10.06750 -9.61264 -8.16753 -6.33544 0.02575 1.16174 1.43449 1.44269 1.45553 1.56753 1.83251 2.32619 2.39333 2.55164 2.79973 2.98213 3.07864 3.12802 3.23115 3.57392 3.80017 3.89697 3.98937 4.22413 4.39925 4.49212 4.51937 4.58325 4.74763 4.80233 4.92183 5.06468 5.20472 5.27578 5.43719 5.54926 5.60228 5.78849 5.89241 6.16089 6.47192 6.72860 6.95616 7.30420 7.47479 8.88748 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003822 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.181778 B = 7325.205539 C = 8620.856796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.689 5.689 14 C 0.578 3.422 15 O -0.562 6.562 16 C -0.081 4.081 17 N -0.500 5.500 18 C 0.205 3.795 19 O -0.190 6.190 20 C 0.039 3.961 21 C -0.040 4.040 22 C -0.153 4.153 23 C 0.459 3.541 24 F -0.190 7.190 25 F -0.187 7.187 26 F -0.181 7.181 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.310 0.690 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 7.505 15.294 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.337 5.337 14 C 0.364 3.636 15 O -0.443 6.443 16 C -0.200 4.200 17 N -0.228 5.228 18 C -0.023 4.023 19 O -0.076 6.076 20 C -0.018 4.018 21 C -0.077 4.077 22 C -0.191 4.191 23 C 0.405 3.595 24 F -0.172 7.172 25 F -0.168 7.168 26 F -0.163 7.163 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.325 0.675 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.807 7.147 14.490 20.617 hybrid contribution 0.610 0.051 -0.425 0.746 sum -12.196 7.198 14.065 19.959 Atomic orbital electron populations 1.21669 0.96606 0.99265 1.00421 1.21780 0.94118 0.98859 1.01192 1.18461 0.93718 0.89344 0.80887 0.97549 1.21574 0.91508 1.39078 1.06680 0.91666 1.25704 1.03191 0.94269 0.94921 1.70035 1.36914 1.38272 1.09795 0.85352 0.79279 0.77906 0.78136 1.18829 1.20274 1.20798 1.46162 1.15023 1.54738 1.17735 1.17186 0.82533 0.78503 0.85395 1.90758 1.52179 1.61416 1.39948 1.21549 0.94075 1.08673 0.95685 1.70777 1.32898 1.18699 1.00461 1.29282 0.77690 0.93931 1.01386 1.84388 1.37774 1.61421 1.24059 1.23173 0.97351 0.96975 0.84284 1.20215 0.90641 0.99645 0.97230 1.22770 0.93103 1.02048 1.01145 1.20477 0.84624 0.73448 0.80911 1.93227 1.88339 1.96100 1.39540 1.93185 1.73537 1.54542 1.95555 1.93181 1.81073 1.48701 1.93307 0.93860 0.94896 0.93603 0.90751 0.94533 0.92504 0.76294 0.67549 0.85834 0.87565 0.87760 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.51 71.98 0.61 -4.80 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.47 2.24 44.25 0.10 14.57 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 5 C -0.55 -29.77 8.73 25.60 0.22 -29.54 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.04 11.29 21.45 0.24 -51.80 16 9 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.69 -30.24 5.02 -449.37 -2.25 -32.50 16 14 C 0.58 23.37 6.38 86.66 0.55 23.92 16 15 O -0.56 -24.82 11.93 -4.08 -0.05 -24.87 16 16 C -0.08 -2.55 6.99 40.41 0.28 -2.27 16 17 N -0.50 -13.44 11.06 -305.15 -3.37 -16.81 16 18 C 0.21 3.29 13.19 130.52 1.72 5.01 16 19 O -0.19 -3.46 10.73 0.35 0.00 -3.46 16 20 C 0.04 0.96 6.69 25.18 0.17 1.13 16 21 C -0.04 -0.86 4.97 29.85 0.15 -0.72 16 22 C -0.15 -2.95 5.24 30.59 0.16 -2.79 16 23 C 0.46 10.00 3.16 71.98 0.23 10.22 16 24 F -0.19 -5.32 16.80 44.97 0.76 -4.56 16 25 F -0.19 -4.23 17.32 44.97 0.78 -3.45 16 26 F -0.18 -3.62 16.80 44.97 0.76 -2.86 16 27 H 0.04 1.83 5.64 -2.39 -0.01 1.81 16 28 H 0.03 1.55 7.84 -2.39 -0.02 1.53 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 4.10 5.95 -2.38 -0.01 4.08 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.40 16.54 8.27 -92.71 -0.77 15.77 16 34 H 0.31 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.12 1.93 7.80 -2.38 -0.02 1.91 16 36 H 0.11 2.95 6.14 -2.39 -0.01 2.94 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.14 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -68.75 334.55 4.06 -64.69 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.36 Total: 20.61 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.81 Total: 10.44 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -5.39 Total: -101.11 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.04 Total: -28.33 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 2.29 Total: -10.88 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -68.75 4.06 -64.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362311426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.557 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds