Wall clock time and date at job start Tue Mar 31 2020 12:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30011 * 127.33332 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82848 * 179.97438 * 5 4 3 7 7 F 1.39899 * 109.46714 * 270.01993 * 6 5 4 8 8 F 1.39899 * 109.47032 * 30.01845 * 6 5 4 9 9 F 1.39902 * 109.47136 * 150.02237 * 6 5 4 10 10 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 11 11 C 1.47402 * 128.56716 * 179.97438 * 10 5 4 12 12 O 1.21612 * 119.99821 * 270.02818 * 11 10 5 13 13 N 1.34774 * 120.00103 * 90.01943 * 11 10 5 14 14 C 1.46502 * 119.99762 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46804 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47363 * 299.99871 * 15 14 13 17 17 C 1.53003 * 109.47259 * 60.00423 * 15 14 13 18 18 C 1.50704 * 109.46833 * 179.97438 * 15 14 13 19 19 H 1.07993 * 120.00153 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99937 * 179.97438 * 18 15 14 21 21 N 1.31523 * 119.99873 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00234 * 180.02562 * 20 18 15 23 23 H 1.48505 * 109.46607 * 90.00122 * 22 20 18 24 24 H 1.48492 * 109.47171 * 210.00087 * 22 20 18 25 25 H 1.48496 * 109.47031 * 330.00549 * 22 20 18 26 26 H 1.08994 * 109.47090 * 90.01980 * 1 2 3 27 27 H 1.08997 * 109.47123 * 210.02888 * 1 2 3 28 28 H 1.09001 * 109.46847 * 330.02255 * 1 2 3 29 29 H 0.96993 * 119.99839 * 0.02562 * 13 11 10 30 30 H 1.09005 * 109.47338 * 299.99936 * 14 13 11 31 31 H 1.09000 * 109.46978 * 60.00304 * 14 13 11 32 32 H 1.09004 * 109.46832 * 59.99998 * 16 15 14 33 33 H 1.08993 * 109.46971 * 180.02562 * 16 15 14 34 34 H 1.09000 * 109.47168 * 300.00471 * 16 15 14 35 35 H 1.08998 * 109.47173 * 59.99176 * 17 15 14 36 36 H 1.08999 * 109.47015 * 180.02562 * 17 15 14 37 37 H 1.09004 * 109.46747 * 299.99886 * 17 15 14 38 38 H 0.97004 * 119.99541 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0004 6 6 4.9713 -1.3246 0.0003 7 9 5.3804 -1.5480 -1.3187 8 9 5.9288 -0.5469 0.6603 9 9 4.8315 -2.5508 0.6593 10 6 2.3992 -1.1696 0.0003 11 6 2.0400 -2.5992 -0.0004 12 8 1.8922 -3.1885 -1.0539 13 7 1.8756 -3.2532 1.1665 14 6 1.5192 -4.6742 1.1657 15 6 1.3939 -5.1693 2.6080 16 6 2.7291 -4.9788 3.3305 17 6 0.3056 -4.3710 3.3286 18 6 1.0267 -6.6309 2.6072 19 1 0.8961 -7.1544 1.6717 20 6 0.8584 -7.3000 3.8010 21 7 1.0178 -6.6626 4.9403 22 14 0.4038 -9.1119 3.8001 23 1 1.6415 -9.9326 3.8004 24 1 -0.3961 -9.4221 5.0120 25 1 -0.3949 -9.4213 2.5871 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 -0.8897 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 1.9933 -2.7831 2.0067 30 1 0.5677 -4.8100 0.6515 31 1 2.2943 -5.2429 0.6520 32 1 2.9943 -3.9215 3.3309 33 1 2.6399 -5.3319 4.3577 34 1 3.5044 -5.5475 2.8171 35 1 -0.6455 -4.5067 2.8139 36 1 0.2167 -4.7234 4.3562 37 1 0.5708 -3.3137 3.3291 38 1 0.8991 -7.1333 5.7801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436635421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:11 Heat of formation + Delta-G solvation = -126.609146 kcal Electronic energy + Delta-G solvation = -28180.468096 eV Core-core repulsion = 23611.797873 eV Total energy + Delta-G solvation = -4568.670224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.53883 -48.05515 -48.03241 -45.42740 -39.51341 -36.54284 -35.03033 -33.57342 -33.17628 -30.94549 -29.19516 -27.30692 -25.97650 -25.80675 -25.30115 -23.91544 -21.56606 -20.75566 -19.15454 -19.10192 -18.79970 -18.70334 -17.99907 -17.67494 -16.23777 -15.82008 -15.40649 -14.92351 -14.85076 -14.72593 -14.66267 -14.40375 -14.13409 -14.11109 -13.97669 -13.68638 -13.54842 -13.43617 -13.00820 -12.87711 -12.56591 -12.30054 -11.80113 -11.46465 -11.27907 -10.93104 -10.77544 -10.51382 -10.47453 -10.40165 -10.25505 -10.01870 -9.72902 -9.42915 -8.87608 -8.69010 -8.42589 -6.08032 -4.18559 0.44205 1.42521 1.43181 2.33340 2.66553 3.15839 3.20682 3.25111 3.32547 3.36355 3.69984 3.86784 3.97079 4.13237 4.35612 4.53705 4.78553 5.08942 5.19132 5.19620 5.29557 5.70333 6.06219 6.18342 6.39282 6.55850 6.73625 6.77582 6.84090 6.92599 7.25883 7.47485 7.57944 7.61671 7.71491 7.93135 8.04497 8.23023 8.33983 8.81708 9.47792 10.93406 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.003834 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.939130 B = 7301.234639 C = 7953.146557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.058 3.942 3 N -0.329 5.329 4 O 0.135 5.865 5 C -0.102 4.102 6 C 0.564 3.436 7 F -0.155 7.155 8 F -0.159 7.159 9 F -0.144 7.144 10 C -0.156 4.156 11 C 0.575 3.425 12 O -0.522 6.522 13 N -0.693 5.693 14 C 0.130 3.870 15 C 0.056 3.944 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.402 0.598 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.005 0.995 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.005 0.995 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 13.840 -6.407 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 N -0.029 5.029 4 O 0.066 5.934 5 C -0.168 4.168 6 C 0.508 3.492 7 F -0.136 7.136 8 F -0.140 7.140 9 F -0.125 7.125 10 C -0.163 4.163 11 C 0.356 3.644 12 O -0.399 6.399 13 N -0.342 5.342 14 C 0.008 3.992 15 C 0.056 3.944 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.546 4.546 19 H 0.077 0.923 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.238 0.762 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.024 0.976 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.500 14.630 -6.939 16.566 hybrid contribution 0.021 -1.525 0.420 1.582 sum 3.521 13.105 -6.519 15.054 Atomic orbital electron populations 1.20346 0.83860 1.05013 1.04586 1.24919 0.99189 0.85383 1.00800 1.73621 0.88745 1.22879 1.17675 1.84635 1.21814 1.19885 1.67080 1.24179 0.95225 0.86630 1.10733 1.16509 0.80504 0.77068 0.75113 1.93313 1.90736 1.94650 1.34947 1.93284 1.65473 1.74479 1.80806 1.93375 1.95483 1.43022 1.80600 1.22537 0.91270 0.97317 1.05171 1.16858 0.79058 0.83037 0.85404 1.90860 1.50891 1.67021 1.31094 1.46302 1.67519 1.13369 1.07050 1.21924 0.99554 0.76382 1.01298 1.18380 0.93147 0.95444 0.87467 1.21846 0.96937 0.95792 1.04402 1.21850 0.97860 0.94774 1.04471 1.20940 1.47535 0.93350 0.92732 0.92336 1.24873 0.94900 0.98153 0.95493 1.69802 1.49452 1.35835 0.97242 0.86559 0.78520 0.85180 0.77552 1.20670 1.21262 1.19881 0.88968 0.88896 0.89297 0.76216 0.92010 0.91985 0.97559 0.89467 0.95220 0.95275 0.89441 0.97621 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.49 36.01 0.38 -0.36 16 2 C 0.06 0.71 7.59 -79.77 -0.61 0.11 16 3 N -0.33 -4.13 12.01 34.78 0.42 -3.71 16 4 O 0.14 1.67 11.06 18.65 0.21 1.88 16 5 C -0.10 -1.32 6.85 -34.63 -0.24 -1.56 16 6 C 0.56 7.02 3.52 36.01 0.13 7.15 16 7 F -0.16 -1.97 17.30 2.25 0.04 -1.93 16 8 F -0.16 -1.80 17.30 2.25 0.04 -1.76 16 9 F -0.14 -2.02 16.09 2.25 0.04 -1.98 16 10 C -0.16 -2.18 6.19 -102.89 -0.64 -2.82 16 11 C 0.58 9.57 6.59 -12.53 -0.08 9.49 16 12 O -0.52 -10.38 17.11 5.27 0.09 -10.29 16 13 N -0.69 -11.58 4.95 -61.39 -0.30 -11.88 16 14 C 0.13 2.56 4.50 -4.04 -0.02 2.54 16 15 C 0.06 1.23 0.50 -155.66 -0.08 1.16 16 16 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 17 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 18 C -0.51 -12.69 8.01 -34.44 -0.28 -12.96 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -22.82 9.35 55.43 0.52 -22.30 16 22 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.40 6.20 6.15 -40.82 -0.25 5.95 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 37 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 38 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -27.02 336.65 -3.92 -30.94 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.09 Total: 1.57 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.92 Total: -0.69 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.63 Total: -37.90 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.30 Total: -8.41 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.11 Total: -5.67 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.02 -3.92 -30.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436635421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.671 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds