Wall clock time and date at job start Tue Mar 31 2020 14:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38292 * 119.95562 * 359.97438 * 16 15 14 18 18 C 1.38298 * 120.26565 * 179.97438 * 17 16 15 19 19 C 1.38056 * 120.16904 * 359.97438 * 18 17 16 20 20 C 1.39252 * 119.90635 * 0.02562 * 19 18 17 21 21 C 1.48440 * 120.13198 * 179.97438 * 20 19 18 22 22 N 1.34053 * 126.67660 * 179.68663 * 21 20 19 23 23 N 1.28982 * 107.26634 * 179.89893 * 22 21 20 24 24 N 1.28730 * 108.94801 * 0.37158 * 23 22 21 25 25 H 0.97003 * 125.34330 * 179.78745 * 24 23 22 26 26 N 1.28871 * 109.32014 * 359.76363 * 24 23 22 27 27 C 1.38244 * 119.95238 * 179.72054 * 16 15 14 28 28 F 1.35105 * 120.08789 * 0.02642 * 27 16 15 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 34 34 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 35 35 H 1.08000 * 119.86511 * 0.02562 * 17 16 15 36 36 H 1.07997 * 119.91702 * 180.02562 * 18 17 16 37 37 H 1.08005 * 120.04528 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7618 -0.3294 -4.8640 17 6 0.9638 0.7986 -4.8082 18 6 0.5339 1.4067 -5.9736 19 6 0.8998 0.8912 -7.2009 20 6 1.7032 -0.2444 -7.2654 21 6 2.0991 -0.8033 -8.5823 22 7 2.8682 -1.8802 -8.7966 23 7 2.9693 -2.0303 -10.0737 24 7 2.3067 -1.0943 -10.6584 25 1 2.2257 -0.9795 -11.6182 26 7 1.7674 -0.3339 -9.7687 27 6 2.1381 -0.8524 -6.0872 28 9 2.9216 -1.9518 -6.1416 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 3.3163 -0.9858 -3.5570 34 1 1.8625 -2.0129 -3.5567 35 1 0.6757 1.2068 -3.8507 36 1 -0.0888 2.2876 -5.9235 37 1 0.5626 1.3674 -8.1098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:26 Heat of formation + Delta-G solvation = 16.654863 kcal Electronic energy + Delta-G solvation = -25485.138394 eV Core-core repulsion = 21373.369751 eV Total energy + Delta-G solvation = -4111.768644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.99095 -44.75438 -39.88095 -39.08241 -35.96427 -34.71409 -33.98586 -33.90931 -31.99534 -30.63426 -30.56190 -26.79310 -25.22776 -25.10683 -24.74255 -23.06265 -22.26440 -21.28312 -19.86506 -19.51804 -17.65692 -17.47012 -16.93996 -16.53502 -16.33996 -16.10071 -15.84166 -15.51089 -15.30959 -14.73709 -14.39929 -14.28457 -13.52763 -13.33638 -13.27574 -12.80926 -12.70413 -12.53315 -12.28994 -11.76246 -11.66380 -11.61501 -11.44696 -11.22761 -11.22227 -11.04698 -10.83031 -10.71766 -10.41720 -10.25835 -10.07213 -9.18505 -9.08153 -8.95954 -8.83189 -8.46120 -6.12293 -4.17636 0.33709 0.88025 0.89789 1.89694 2.03161 3.13829 3.25848 3.32867 3.35300 3.36259 3.37958 3.45893 3.81200 4.03257 4.39787 4.47787 4.71175 4.79239 4.98934 5.09343 5.15317 5.21257 5.40611 5.46562 5.58914 5.73764 5.81607 5.98894 6.02212 6.13583 6.24692 6.55038 6.63296 6.82348 6.84639 7.14939 7.40707 7.72087 7.83147 7.92275 8.11733 8.79116 8.91173 9.48079 10.95024 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.034837 B = 0.002426 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.550727 B =11536.584376 C =12245.976473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.467 3.533 13 O -0.513 6.513 14 O -0.363 6.363 15 C 0.105 3.895 16 C -0.121 4.121 17 C -0.044 4.044 18 C -0.132 4.132 19 C -0.055 4.055 20 C -0.061 4.061 21 C 0.223 3.777 22 N -0.256 5.256 23 N -0.049 5.049 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.292 5.292 27 C 0.148 3.852 28 F -0.114 7.114 29 H 0.023 0.977 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 2.686 -25.052 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.399 6.399 14 O -0.282 6.282 15 C 0.031 3.969 16 C -0.122 4.122 17 C -0.063 4.063 18 C -0.150 4.150 19 C -0.075 4.075 20 C -0.065 4.065 21 C -0.057 4.057 22 N -0.129 5.129 23 N -0.044 5.044 24 N -0.074 5.074 25 H 0.330 0.670 26 N -0.144 5.144 27 C 0.126 3.874 28 F -0.092 7.092 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.707 1.996 -25.313 25.449 hybrid contribution 0.299 -0.416 0.269 0.579 sum -1.408 1.580 -25.045 25.134 Atomic orbital electron populations 1.21744 0.95535 1.00126 1.01750 1.18770 0.94875 0.96981 0.85315 0.91699 1.21092 1.32031 1.13298 0.88759 0.90669 1.24930 0.94877 0.95008 0.99126 1.69864 1.36448 1.22754 1.23999 0.86427 0.79316 0.79685 0.81279 1.21229 1.20070 1.20071 1.25411 0.76624 0.83322 0.83549 1.90521 1.36152 1.26632 1.86583 1.86540 1.70606 1.55722 1.15311 1.21351 0.99172 0.94955 0.81420 1.19699 1.01584 0.98526 0.92360 1.21299 0.92526 0.92232 1.00223 1.21212 1.01321 1.01159 0.91284 1.21071 0.94372 0.92810 0.99269 1.17096 1.04987 0.99061 0.85357 1.23385 0.97089 0.92619 0.92606 1.76298 1.16238 1.15673 1.04686 1.78964 1.12868 1.11082 1.01532 1.47732 1.31241 1.16284 1.12175 0.67027 1.74885 1.21217 1.20101 0.98222 1.17207 0.92826 0.85274 0.92107 1.91599 1.70928 1.49639 1.97050 0.95752 0.94941 0.88527 0.92618 0.89791 0.89802 0.82772 0.84119 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.90 37.16 0.33 -2.70 16 2 C 0.06 1.46 2.74 -92.93 -0.25 1.21 16 3 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.51 -14.16 8.37 -34.44 -0.29 -14.45 16 5 H 0.08 2.17 6.76 -52.49 -0.35 1.81 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.47 10.57 7.25 36.00 0.26 10.83 16 13 O -0.51 -12.85 15.21 -18.75 -0.29 -13.14 16 14 O -0.36 -6.73 8.58 -39.25 -0.34 -7.07 16 15 C 0.11 1.68 5.43 36.01 0.20 1.87 16 16 C -0.12 -1.61 5.88 -104.60 -0.62 -2.22 16 17 C -0.04 -0.50 9.38 -39.54 -0.37 -0.87 16 18 C -0.13 -1.16 10.03 -39.63 -0.40 -1.56 16 19 C -0.06 -0.50 9.70 -39.27 -0.38 -0.88 16 20 C -0.06 -0.71 5.88 -104.83 -0.62 -1.32 16 21 C 0.22 2.64 7.92 -156.30 -1.24 1.40 16 22 N -0.26 -3.37 11.24 32.15 0.36 -3.01 16 23 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 24 N -0.23 -1.60 7.90 60.35 0.48 -1.13 16 25 H 0.48 0.85 8.96 -340.36 -3.05 -2.21 16 26 N -0.29 -2.74 12.08 32.17 0.39 -2.35 16 27 C 0.15 1.95 7.22 -39.09 -0.28 1.67 16 28 F -0.11 -1.68 15.36 2.25 0.03 -1.65 16 29 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.08 1.35 8.13 -51.93 -0.42 0.92 16 34 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 35 H 0.15 1.78 6.97 -52.49 -0.37 1.41 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 0.99 7.88 -52.48 -0.41 0.57 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -32.33 333.71 -7.83 -40.16 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -6.17 Total: -4.29 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.75 Total: -5.44 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 2.67 Total: -29.87 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.62 Total: -20.20 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.03 Total: -1.65 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.33 -7.83 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.816 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds