Wall clock time and date at job start Tue Mar 31 2020 14:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38292 * 119.95562 * 359.97438 * 16 15 14 18 18 C 1.38298 * 120.26565 * 179.97438 * 17 16 15 19 19 C 1.38056 * 120.16904 * 359.97438 * 18 17 16 20 20 C 1.39252 * 119.90635 * 0.02562 * 19 18 17 21 21 C 1.48440 * 120.13198 * 179.97438 * 20 19 18 22 22 N 1.34053 * 126.67660 * 179.68663 * 21 20 19 23 23 N 1.28982 * 107.26634 * 179.89893 * 22 21 20 24 24 N 1.28730 * 108.94801 * 0.37158 * 23 22 21 25 25 H 0.97003 * 125.34330 * 179.78745 * 24 23 22 26 26 N 1.28871 * 109.32014 * 359.76363 * 24 23 22 27 27 C 1.38244 * 119.95238 * 179.72054 * 16 15 14 28 28 F 1.35105 * 120.08789 * 0.02642 * 27 16 15 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 34 34 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 35 35 H 1.08000 * 119.86511 * 0.02562 * 17 16 15 36 36 H 1.07997 * 119.91702 * 180.02562 * 18 17 16 37 37 H 1.08005 * 120.04528 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7618 -0.3294 -4.8640 17 6 0.9638 0.7986 -4.8082 18 6 0.5339 1.4067 -5.9736 19 6 0.8998 0.8912 -7.2009 20 6 1.7032 -0.2444 -7.2654 21 6 2.0991 -0.8033 -8.5823 22 7 2.8682 -1.8802 -8.7966 23 7 2.9693 -2.0303 -10.0737 24 7 2.3067 -1.0943 -10.6584 25 1 2.2257 -0.9795 -11.6182 26 7 1.7674 -0.3339 -9.7687 27 6 2.1381 -0.8524 -6.0872 28 9 2.9216 -1.9518 -6.1416 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 3.3163 -0.9858 -3.5570 34 1 1.8625 -2.0129 -3.5567 35 1 0.6757 1.2068 -3.8507 36 1 -0.0888 2.2876 -5.9235 37 1 0.5626 1.3674 -8.1098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:26 Heat of formation + Delta-G solvation = -2.828036 kcal Electronic energy + Delta-G solvation = -25485.983236 eV Core-core repulsion = 21373.369751 eV Total energy + Delta-G solvation = -4112.613485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02177 -45.52876 -41.46177 -40.13479 -37.58885 -35.90758 -35.53399 -34.84630 -33.11424 -32.41559 -31.46357 -27.98010 -27.23601 -25.98795 -25.57135 -24.77801 -23.12898 -22.33899 -21.49962 -20.32825 -18.65936 -18.63127 -18.24176 -18.00368 -17.76236 -17.46350 -17.12826 -16.92540 -16.66328 -16.09016 -15.53213 -15.20618 -14.99018 -14.77520 -14.48573 -14.25400 -13.88405 -13.59280 -13.44748 -13.30136 -12.97676 -12.77016 -12.64872 -12.51212 -12.48458 -12.45317 -12.28705 -12.13674 -12.10093 -12.02929 -11.76063 -11.09910 -11.05846 -10.50971 -9.86528 -9.71580 -8.18344 -6.30746 -0.48970 0.01877 0.09781 1.17313 1.33990 1.42628 1.44389 1.46136 1.52835 1.73901 2.44179 2.51675 2.52994 2.93535 3.11981 3.15422 3.43991 3.79381 3.95662 4.10794 4.13631 4.17529 4.23209 4.35020 4.43358 4.70183 4.73794 4.92589 4.93863 5.01433 5.04819 5.24323 5.28528 5.43832 5.51748 5.57531 5.71870 5.72594 5.92485 6.13972 6.74796 7.01941 7.04231 7.37680 8.87601 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.034837 B = 0.002426 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.550727 B =11536.584376 C =12245.976473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 H 0.057 0.943 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.474 3.526 13 O -0.543 6.543 14 O -0.348 6.348 15 C 0.106 3.894 16 C -0.134 4.134 17 C -0.052 4.052 18 C -0.111 4.111 19 C -0.040 4.040 20 C -0.065 4.065 21 C 0.207 3.793 22 N -0.296 5.296 23 N -0.058 5.058 24 N -0.195 5.195 25 H 0.497 0.503 26 N -0.279 5.279 27 C 0.128 3.872 28 F -0.131 7.131 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.153 0.847 36 H 0.180 0.820 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 4.230 -26.838 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.034 3.966 3 H 0.075 0.925 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.432 6.432 14 O -0.265 6.265 15 C 0.032 3.968 16 C -0.135 4.135 17 C -0.071 4.071 18 C -0.129 4.129 19 C -0.060 4.060 20 C -0.070 4.070 21 C -0.073 4.073 22 N -0.168 5.168 23 N -0.053 5.053 24 N -0.047 5.047 25 H 0.356 0.644 26 N -0.132 5.132 27 C 0.106 3.894 28 F -0.110 7.110 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.197 0.803 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.989 3.554 -27.140 27.535 hybrid contribution 0.660 -0.821 0.610 1.217 sum -2.329 2.733 -26.530 26.772 Atomic orbital electron populations 1.21580 0.94007 0.99926 1.02397 1.18694 0.96111 0.96246 0.85522 0.92515 1.21226 1.32713 1.13308 0.90633 0.92812 1.25576 0.94928 0.95663 1.01364 1.69935 1.36487 1.23195 1.24791 0.85580 0.78672 0.78692 0.78528 1.19822 1.20067 1.20113 1.24969 0.75969 0.82572 0.84495 1.90505 1.37490 1.27920 1.87292 1.86474 1.69971 1.55346 1.14723 1.21447 0.98905 0.94905 0.81559 1.19477 1.03401 0.99798 0.90822 1.21406 0.92486 0.91754 1.01421 1.21577 1.00079 1.01341 0.89876 1.21438 0.92588 0.91366 1.00602 1.17289 1.05215 0.99677 0.84772 1.23475 0.97676 0.92836 0.93327 1.76286 1.17686 1.16987 1.05876 1.78904 1.13540 1.11847 1.00992 1.47815 1.29085 1.14676 1.13101 0.64377 1.74838 1.20811 1.19876 0.97662 1.17374 0.93739 0.85488 0.92793 1.91548 1.71631 1.50645 1.97158 0.92487 0.95471 0.90350 0.92224 0.90502 0.90495 0.82936 0.80296 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.90 71.98 0.64 -4.82 16 2 C 0.05 2.65 2.74 -12.29 -0.03 2.62 16 3 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 4 C -0.54 -30.42 8.37 25.60 0.21 -30.21 16 5 H 0.05 3.20 6.76 -2.91 -0.02 3.18 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.91 -49.24 11.32 21.45 0.24 -49.00 16 8 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.47 21.94 7.25 71.24 0.52 22.45 16 13 O -0.54 -28.13 15.21 21.98 0.33 -27.80 16 14 O -0.35 -12.97 8.58 -51.39 -0.44 -13.41 16 15 C 0.11 3.47 5.43 71.24 0.39 3.86 16 16 C -0.13 -3.55 5.88 -19.85 -0.12 -3.66 16 17 C -0.05 -1.09 9.38 22.30 0.21 -0.88 16 18 C -0.11 -1.55 10.03 22.24 0.22 -1.33 16 19 C -0.04 -0.60 9.70 22.47 0.22 -0.38 16 20 C -0.07 -1.43 5.88 -20.00 -0.12 -1.54 16 21 C 0.21 4.62 7.92 137.37 1.09 5.71 16 22 N -0.30 -7.71 11.24 -52.19 -0.59 -8.30 16 23 N -0.06 -1.14 13.47 37.02 0.50 -0.65 16 24 N -0.20 -2.30 7.90 37.02 0.29 -2.01 16 25 H 0.50 0.38 8.96 -347.53 -3.12 -2.73 16 26 N -0.28 -4.52 12.08 -52.14 -0.63 -5.15 16 27 C 0.13 3.39 7.22 22.59 0.16 3.55 16 28 F -0.13 -4.07 15.36 44.97 0.69 -3.38 16 29 H 0.06 2.13 8.11 -2.38 -0.02 2.11 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 3.84 6.07 -2.39 -0.01 3.82 16 32 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 34 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 35 H 0.15 3.24 6.97 -2.91 -0.02 3.22 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.17 1.56 7.88 -2.91 -0.02 1.54 16 Total: -1.00 -71.17 333.71 4.31 -66.86 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -1.96 Total: -0.04 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 3.84 Total: -2.82 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.18 Total: -65.10 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.11 Total: -41.21 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.69 Total: -3.38 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.17 4.31 -66.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.036 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds