Wall clock time and date at job start Tue Mar 31 2020 14:02:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08996 * 109.47012 * 2 1
4 4 C 1.50698 * 109.47280 * 239.99882 * 2 1 3
5 5 H 1.07994 * 120.00212 * 275.10691 * 4 2 1
6 6 C 1.37878 * 119.99687 * 95.10050 * 4 2 1
7 7 N 1.31511 * 119.99785 * 184.90979 * 6 4 2
8 8 Si 1.86794 * 120.00209 * 4.91640 * 6 4 2
9 9 H 1.48506 * 109.47310 * 84.81849 * 8 6 4
10 10 H 1.48500 * 109.47252 * 204.81922 * 8 6 4
11 11 H 1.48499 * 109.47213 * 324.82093 * 8 6 4
12 12 C 1.50702 * 109.46698 * 120.00373 * 2 1 3
13 13 O 1.20822 * 119.99911 * 120.00201 * 12 2 1
14 14 O 1.34232 * 119.99564 * 299.99419 * 12 2 1
15 15 C 1.45205 * 116.99401 * 180.02562 * 14 12 2
16 16 C 1.50704 * 109.46586 * 180.02562 * 15 14 12
17 17 C 1.37997 * 119.95786 * 0.02562 * 16 15 14
18 18 C 1.39296 * 119.90925 * 180.02562 * 17 16 15
19 19 C 1.48444 * 120.09188 * 180.02562 * 18 17 16
20 20 N 1.34053 * 126.67856 * 359.65816 * 19 18 17
21 21 N 1.28986 * 107.27123 * 179.87220 * 20 19 18
22 22 N 1.28730 * 108.94342 * 0.40252 * 21 20 19
23 23 H 0.96994 * 125.34132 * 179.76720 * 22 21 20
24 24 N 1.28873 * 109.32023 * 359.74181 * 22 21 20
25 25 C 1.39332 * 119.81349 * 359.97438 * 18 17 16
26 26 C 1.37959 * 119.90974 * 0.02562 * 25 18 17
27 27 C 1.38528 * 119.95127 * 179.97438 * 16 15 14
28 28 F 1.35100 * 119.90699 * 359.97438 * 27 16 15
29 29 H 1.09000 * 109.46900 * 55.06201 * 1 2 3
30 30 H 1.09001 * 109.47328 * 175.05439 * 1 2 3
31 31 H 1.08994 * 109.47484 * 295.06012 * 1 2 3
32 32 H 0.97009 * 119.99865 * 180.02562 * 7 6 4
33 33 H 1.08997 * 109.46989 * 60.00499 * 15 14 12
34 34 H 1.08992 * 109.47291 * 300.00475 * 15 14 12
35 35 H 1.08005 * 120.04792 * 0.02562 * 17 16 15
36 36 H 1.08001 * 120.04488 * 179.73135 * 25 18 17
37 37 H 1.08009 * 119.95102 * 179.97438 * 26 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.1339 -1.7856 -1.2296
6 6 2.3623 0.0123 -2.3573
7 7 2.7081 -0.6128 -3.4615
8 14 2.3182 1.8793 -2.3156
9 1 3.6039 2.3930 -1.7787
10 1 2.1126 2.4004 -3.6909
11 1 1.2030 2.3288 -1.4441
12 6 2.0323 -0.7105 1.2305
13 8 2.7269 -1.6929 1.1196
14 8 1.7080 -0.2518 2.4496
15 6 2.2275 -0.9859 3.5896
16 6 1.7625 -0.3293 4.8639
17 6 0.9652 0.7957 4.8083
18 6 0.5364 1.4020 5.9868
19 6 -0.3218 2.6120 5.9317
20 7 -0.7571 3.2354 4.8277
21 7 -1.4736 4.2372 5.2108
22 7 -1.4950 4.2678 6.4975
23 1 -1.9619 4.9262 7.0354
24 7 -0.7993 3.2861 6.9591
25 6 0.9143 0.8690 7.2174
26 6 1.7115 -0.2560 7.2641
27 6 2.1350 -0.8567 6.0895
28 9 2.9143 -1.9591 6.1396
29 1 -0.3633 0.5885 -0.8425
30 1 -0.3634 -1.0238 -0.0886
31 1 -0.3634 0.4353 0.9308
32 1 2.9406 -0.1042 -4.2542
33 1 3.3170 -0.9847 3.5566
34 1 1.8641 -2.0129 3.5568
35 1 0.6741 1.2055 3.8524
36 1 0.5875 1.3386 8.1334
37 1 2.0052 -0.6696 8.2177
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001589788465.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:02:35
Heat of formation + Delta-G solvation = 15.612748 kcal
Electronic energy + Delta-G solvation = -25736.866737 eV
Core-core repulsion = 21625.052904 eV
Total energy + Delta-G solvation = -4111.813833 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.107 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-49.17408 -44.71215 -39.95019 -39.16872 -35.96012 -34.65369 -33.87523 -33.78050
-32.26316 -31.29200 -30.59586 -26.89853 -25.28515 -24.90393 -24.71031 -23.35949
-22.29262 -21.22525 -19.74918 -19.39219 -17.84764 -17.39999 -17.31732 -16.86418
-16.50352 -16.20810 -15.92346 -15.59726 -15.37884 -14.59741 -14.17824 -14.11005
-13.67883 -13.47055 -13.39082 -13.08461 -12.79910 -12.51484 -12.39111 -12.23777
-11.89626 -11.60890 -11.54146 -11.28293 -11.19341 -11.12870 -11.05833 -10.75623
-10.43896 -10.26787 -9.85653 -9.26944 -9.21735 -9.19473 -8.76568 -8.63100
-6.14009 -4.15861 0.28731 0.88822 0.92454 1.95194 1.98589 3.15556
3.19259 3.30123 3.31618 3.34422 3.35730 3.36544 3.88282 3.93975
4.34509 4.41542 4.52988 4.83800 4.94145 5.00835 5.19110 5.20932
5.39828 5.41723 5.50520 5.63369 5.73709 5.86697 6.03468 6.08871
6.13145 6.19485 6.46924 6.48136 6.53538 6.83097 7.07218 7.23197
7.50148 7.88704 8.38754 8.75850 8.99096 9.43635 10.98307
Molecular weight = 320.11amu
Principal moments of inertia in cm(-1)
A = 0.011918 B = 0.003786 C = 0.002974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2348.883125 B = 7393.807618 C = 9414.120941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.026 3.974
3 H 0.066 0.934
4 C -0.507 4.507
5 H 0.088 0.912
6 C 0.077 3.923
7 N -0.888 5.888
8 Si 0.868 3.132
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.259 1.259
12 C 0.465 3.535
13 O -0.499 6.499
14 O -0.365 6.365
15 C 0.104 3.896
16 C -0.119 4.119
17 C -0.025 4.025
18 C -0.032 4.032
19 C 0.223 3.777
20 N -0.258 5.258
21 N -0.046 5.046
22 N -0.229 5.229
23 H 0.475 0.525
24 N -0.297 5.297
25 C -0.054 4.054
26 C -0.155 4.155
27 C 0.127 3.873
28 F -0.130 7.130
29 H 0.058 0.942
30 H 0.051 0.949
31 H 0.039 0.961
32 H 0.267 0.733
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.161 0.839
36 H 0.143 0.857
37 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.287 8.408 25.626 27.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.006 3.994
3 H 0.084 0.916
4 C -0.544 4.544
5 H 0.106 0.894
6 C -0.126 4.126
7 N -0.525 5.525
8 Si 0.694 3.306
9 H -0.198 1.198
10 H -0.210 1.210
11 H -0.183 1.183
12 C 0.308 3.692
13 O -0.383 6.383
14 O -0.284 6.284
15 C 0.030 3.970
16 C -0.120 4.120
17 C -0.045 4.045
18 C -0.036 4.036
19 C -0.057 4.057
20 N -0.131 5.131
21 N -0.041 5.041
22 N -0.075 5.075
23 H 0.329 0.671
24 N -0.149 5.149
25 C -0.074 4.074
26 C -0.174 4.174
27 C 0.106 3.894
28 F -0.108 7.108
29 H 0.077 0.923
30 H 0.070 0.930
31 H 0.059 0.941
32 H 0.077 0.923
33 H 0.103 0.897
34 H 0.103 0.897
35 H 0.179 0.821
36 H 0.161 0.839
37 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -7.315 8.554 25.083 27.493
hybrid contribution 0.270 0.757 0.588 0.996
sum -7.044 9.311 25.671 28.202
Atomic orbital electron populations
1.21932 0.95663 1.01515 1.00188 1.19196 0.94895 0.97091 0.88196
0.91586 1.20755 1.44213 0.96248 0.93201 0.89412 1.24989 0.94100
0.98319 0.95209 1.69873 1.44951 1.35981 1.01705 0.86990 0.79494
0.86224 0.77846 1.19840 1.20980 1.18341 1.25278 0.77150 0.83609
0.83194 1.90559 1.35225 1.26082 1.86458 1.86574 1.70623 1.55882
1.15313 1.21390 0.99245 0.94978 0.81365 1.19686 1.01211 0.97905
0.93160 1.21059 0.92343 0.92129 0.98963 1.17225 0.99682 0.92267
0.94394 1.23549 0.99759 0.97859 0.84519 1.76214 1.09601 1.02373
1.24898 1.78990 1.14852 1.15568 0.94698 1.47736 1.33405 1.20807
1.05548 0.67086 1.74877 1.11926 1.01328 1.26739 1.20979 0.95078
0.94243 0.97130 1.20965 1.01306 0.97647 0.97461 1.17566 0.93163
0.85125 0.93519 1.91539 1.71819 1.50222 1.97255 0.92297 0.92966
0.94150 0.92276 0.89662 0.89670 0.82144 0.83946 0.83658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.77 9.14 37.16 0.34 -2.43 16
2 C 0.03 0.61 2.40 -92.92 -0.22 0.39 16
3 H 0.07 1.52 5.29 -51.93 -0.27 1.24 16
4 C -0.51 -14.36 8.36 -34.44 -0.29 -14.65 16
5 H 0.09 2.79 7.61 -52.49 -0.40 2.39 16
6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16
7 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16
8 Si 0.87 20.71 26.99 -169.99 -4.59 16.12 16
9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
11 H -0.26 -5.76 6.82 56.52 0.39 -5.37 16
12 C 0.46 10.43 7.25 36.01 0.26 10.69 16
13 O -0.50 -12.60 15.52 -18.75 -0.29 -12.89 16
14 O -0.37 -6.71 8.49 -39.26 -0.33 -7.04 16
15 C 0.10 1.61 5.43 36.01 0.20 1.80 16
16 C -0.12 -1.52 5.88 -104.60 -0.62 -2.13 16
17 C -0.02 -0.31 9.03 -39.28 -0.35 -0.67 16
18 C -0.03 -0.35 5.88 -104.89 -0.62 -0.97 16
19 C 0.22 2.53 7.94 -156.30 -1.24 1.29 16
20 N -0.26 -3.33 12.23 32.15 0.39 -2.94 16
21 N -0.05 -0.48 13.47 60.35 0.81 0.33 16
22 N -0.23 -1.62 7.90 60.35 0.48 -1.14 16
23 H 0.47 0.94 8.96 -340.38 -3.05 -2.11 16
24 N -0.30 -2.70 12.08 32.17 0.39 -2.32 16
25 C -0.05 -0.46 9.70 -39.28 -0.38 -0.85 16
26 C -0.16 -1.32 10.01 -39.56 -0.40 -1.72 16
27 C 0.13 1.41 7.25 -39.36 -0.29 1.12 16
28 F -0.13 -1.54 16.79 2.25 0.04 -1.50 16
29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
31 H 0.04 0.71 8.00 -51.93 -0.42 0.30 16
32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
33 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16
34 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16
35 H 0.16 2.23 6.81 -52.48 -0.36 1.87 16
36 H 0.14 0.92 7.88 -52.49 -0.41 0.51 16
37 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16
LS Contribution 335.65 15.07 5.06 5.06
Total: -1.00 -34.08 335.65 -7.15 -41.23
By element:
Atomic # 1 Polarization: 3.45 SS G_CDS: -6.18 Total: -2.73 kcal
Atomic # 6 Polarization: -2.33 SS G_CDS: -3.70 Total: -6.03 kcal
Atomic # 7 Polarization: -35.05 SS G_CDS: 2.84 Total: -32.20 kcal
Atomic # 8 Polarization: -19.31 SS G_CDS: -0.62 Total: -19.93 kcal
Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -4.59 Total: 16.12 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -34.08 -7.15 -41.23 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589788465.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.838 kcal
(2) G-P(sol) polarization free energy of solvation -34.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.613 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds