Wall clock time and date at job start Tue Mar 31 2020 14:02:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08996 * 109.47012 * 2 1
4 4 C 1.50698 * 109.47280 * 239.99882 * 2 1 3
5 5 H 1.07994 * 120.00212 * 275.10691 * 4 2 1
6 6 C 1.37878 * 119.99687 * 95.10050 * 4 2 1
7 7 N 1.31511 * 119.99785 * 184.90979 * 6 4 2
8 8 Si 1.86794 * 120.00209 * 4.91640 * 6 4 2
9 9 H 1.48506 * 109.47310 * 84.81849 * 8 6 4
10 10 H 1.48500 * 109.47252 * 204.81922 * 8 6 4
11 11 H 1.48499 * 109.47213 * 324.82093 * 8 6 4
12 12 C 1.50702 * 109.46698 * 120.00373 * 2 1 3
13 13 O 1.20822 * 119.99911 * 120.00201 * 12 2 1
14 14 O 1.34232 * 119.99564 * 299.99419 * 12 2 1
15 15 C 1.45205 * 116.99401 * 180.02562 * 14 12 2
16 16 C 1.50704 * 109.46586 * 180.02562 * 15 14 12
17 17 C 1.37997 * 119.95786 * 0.02562 * 16 15 14
18 18 C 1.39296 * 119.90925 * 180.02562 * 17 16 15
19 19 C 1.48444 * 120.09188 * 180.02562 * 18 17 16
20 20 N 1.34053 * 126.67856 * 359.65816 * 19 18 17
21 21 N 1.28986 * 107.27123 * 179.87220 * 20 19 18
22 22 N 1.28730 * 108.94342 * 0.40252 * 21 20 19
23 23 H 0.96994 * 125.34132 * 179.76720 * 22 21 20
24 24 N 1.28873 * 109.32023 * 359.74181 * 22 21 20
25 25 C 1.39332 * 119.81349 * 359.97438 * 18 17 16
26 26 C 1.37959 * 119.90974 * 0.02562 * 25 18 17
27 27 C 1.38528 * 119.95127 * 179.97438 * 16 15 14
28 28 F 1.35100 * 119.90699 * 359.97438 * 27 16 15
29 29 H 1.09000 * 109.46900 * 55.06201 * 1 2 3
30 30 H 1.09001 * 109.47328 * 175.05439 * 1 2 3
31 31 H 1.08994 * 109.47484 * 295.06012 * 1 2 3
32 32 H 0.97009 * 119.99865 * 180.02562 * 7 6 4
33 33 H 1.08997 * 109.46989 * 60.00499 * 15 14 12
34 34 H 1.08992 * 109.47291 * 300.00475 * 15 14 12
35 35 H 1.08005 * 120.04792 * 0.02562 * 17 16 15
36 36 H 1.08001 * 120.04488 * 179.73135 * 25 18 17
37 37 H 1.08009 * 119.95102 * 179.97438 * 26 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.1339 -1.7856 -1.2296
6 6 2.3623 0.0123 -2.3573
7 7 2.7081 -0.6128 -3.4615
8 14 2.3182 1.8793 -2.3156
9 1 3.6039 2.3930 -1.7787
10 1 2.1126 2.4004 -3.6909
11 1 1.2030 2.3288 -1.4441
12 6 2.0323 -0.7105 1.2305
13 8 2.7269 -1.6929 1.1196
14 8 1.7080 -0.2518 2.4496
15 6 2.2275 -0.9859 3.5896
16 6 1.7625 -0.3293 4.8639
17 6 0.9652 0.7957 4.8083
18 6 0.5364 1.4020 5.9868
19 6 -0.3218 2.6120 5.9317
20 7 -0.7571 3.2354 4.8277
21 7 -1.4736 4.2372 5.2108
22 7 -1.4950 4.2678 6.4975
23 1 -1.9619 4.9262 7.0354
24 7 -0.7993 3.2861 6.9591
25 6 0.9143 0.8690 7.2174
26 6 1.7115 -0.2560 7.2641
27 6 2.1350 -0.8567 6.0895
28 9 2.9143 -1.9591 6.1396
29 1 -0.3633 0.5885 -0.8425
30 1 -0.3634 -1.0238 -0.0886
31 1 -0.3634 0.4353 0.9308
32 1 2.9406 -0.1042 -4.2542
33 1 3.3170 -0.9847 3.5566
34 1 1.8641 -2.0129 3.5568
35 1 0.6741 1.2055 3.8524
36 1 0.5875 1.3386 8.1334
37 1 2.0052 -0.6696 8.2177
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001589788465.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:02:34
Heat of formation + Delta-G solvation = -6.978051 kcal
Electronic energy + Delta-G solvation = -25737.846347 eV
Core-core repulsion = 21625.052904 eV
Total energy + Delta-G solvation = -4112.793444 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.107 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-50.05971 -45.45622 -41.50307 -40.20751 -37.58932 -35.80057 -35.42268 -34.68216
-33.57013 -32.98701 -31.40151 -28.05544 -27.27802 -25.70794 -25.55809 -24.87218
-23.33851 -22.14484 -21.39638 -20.19088 -19.29244 -18.74354 -18.23775 -18.13605
-17.81952 -17.50456 -17.15428 -16.89969 -16.65890 -16.00956 -15.38609 -15.09779
-14.97350 -14.73638 -14.46646 -14.31855 -14.12723 -14.03758 -13.66042 -13.41905
-13.12146 -12.97687 -12.83459 -12.63850 -12.39091 -12.35192 -12.25311 -12.04875
-12.00704 -11.77785 -11.68834 -11.31151 -11.07471 -10.77740 -10.06918 -9.60259
-8.32405 -6.41603 -0.51113 0.07981 0.16310 1.16568 1.33792 1.39250
1.42811 1.43197 1.51321 1.69983 2.33152 2.49797 2.59835 3.03097
3.09346 3.09881 3.42906 3.73420 3.98526 4.02512 4.13188 4.13969
4.22000 4.36140 4.39189 4.45830 4.67290 4.68869 4.83201 4.89078
4.99871 5.06844 5.15328 5.23061 5.40000 5.49527 5.53446 5.63217
5.66552 6.20726 6.67376 6.98330 7.12784 7.22754 8.84391
Molecular weight = 320.11amu
Principal moments of inertia in cm(-1)
A = 0.011918 B = 0.003786 C = 0.002974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2348.883125 B = 7393.807618 C = 9414.120941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.020 3.980
3 H 0.081 0.919
4 C -0.519 4.519
5 H 0.032 0.968
6 C 0.018 3.982
7 N -0.941 5.941
8 Si 0.937 3.063
9 H -0.266 1.266
10 H -0.279 1.279
11 H -0.226 1.226
12 C 0.472 3.528
13 O -0.537 6.537
14 O -0.351 6.351
15 C 0.102 3.898
16 C -0.132 4.132
17 C -0.038 4.038
18 C -0.034 4.034
19 C 0.210 3.790
20 N -0.296 5.296
21 N -0.058 5.058
22 N -0.198 5.198
23 H 0.495 0.505
24 N -0.284 5.284
25 C -0.037 4.037
26 C -0.136 4.136
27 C 0.119 3.881
28 F -0.137 7.137
29 H 0.064 0.936
30 H 0.043 0.957
31 H 0.072 0.928
32 H 0.271 0.729
33 H 0.081 0.919
34 H 0.082 0.918
35 H 0.143 0.857
36 H 0.173 0.827
37 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.526 11.130 29.238 32.426
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.001 3.999
3 H 0.099 0.901
4 C -0.556 4.556
5 H 0.050 0.950
6 C -0.180 4.180
7 N -0.580 5.580
8 Si 0.759 3.241
9 H -0.191 1.191
10 H -0.205 1.205
11 H -0.149 1.149
12 C 0.316 3.684
13 O -0.425 6.425
14 O -0.268 6.268
15 C 0.029 3.971
16 C -0.133 4.133
17 C -0.058 4.058
18 C -0.038 4.038
19 C -0.070 4.070
20 N -0.168 5.168
21 N -0.053 5.053
22 N -0.049 5.049
23 H 0.355 0.645
24 N -0.137 5.137
25 C -0.057 4.057
26 C -0.154 4.154
27 C 0.099 3.901
28 F -0.116 7.116
29 H 0.083 0.917
30 H 0.063 0.937
31 H 0.091 0.909
32 H 0.080 0.920
33 H 0.099 0.901
34 H 0.100 0.900
35 H 0.161 0.839
36 H 0.190 0.810
37 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges -8.593 11.301 28.737 32.053
hybrid contribution 0.613 -0.127 -0.344 0.714
sum -7.980 11.174 28.393 31.539
Atomic orbital electron populations
1.21832 0.92985 1.01600 1.02167 1.19165 0.96883 0.97060 0.86829
0.90120 1.20826 1.44814 0.94144 0.95825 0.94953 1.25949 0.93361
1.04378 0.94311 1.70034 1.46664 1.38523 1.02763 0.85886 0.80812
0.78678 0.78733 1.19138 1.20462 1.14880 1.24902 0.76321 0.82795
0.84377 1.90548 1.36970 1.27738 1.87259 1.86510 1.70004 1.55536
1.14790 1.21559 0.99166 0.95069 0.81344 1.19434 1.02846 0.98712
0.92350 1.20869 0.93278 0.92504 0.99157 1.17307 0.99590 0.92232
0.94651 1.23624 1.00396 0.98329 0.84648 1.76189 1.10902 1.03462
1.26245 1.78931 1.15104 1.15385 0.95864 1.47815 1.31840 1.20240
1.04994 0.64545 1.74837 1.11624 1.01302 1.25933 1.21303 0.93631
0.93565 0.97195 1.21317 0.99637 0.96737 0.97721 1.17726 0.93441
0.85180 0.93746 1.91526 1.72104 1.50658 1.97276 0.91683 0.93743
0.90899 0.91995 0.90062 0.89984 0.83933 0.80975 0.80159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.12 9.14 71.98 0.66 -4.46 16
2 C 0.02 0.95 2.40 -12.29 -0.03 0.92 16
3 H 0.08 3.58 5.29 -2.39 -0.01 3.57 16
4 C -0.52 -30.54 8.36 25.60 0.21 -30.33 16
5 H 0.03 2.20 7.61 -2.91 -0.02 2.18 16
6 C 0.02 1.07 5.47 84.66 0.46 1.53 16
7 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16
8 Si 0.94 42.32 26.99 68.60 1.85 44.17 16
9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16
10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
11 H -0.23 -8.97 6.82 99.48 0.68 -8.30 16
12 C 0.47 21.60 7.25 71.24 0.52 22.12 16
13 O -0.54 -28.40 15.52 21.97 0.34 -28.06 16
14 O -0.35 -12.95 8.49 -51.44 -0.44 -13.39 16
15 C 0.10 3.20 5.43 71.24 0.39 3.59 16
16 C -0.13 -3.29 5.88 -19.85 -0.12 -3.41 16
17 C -0.04 -0.92 9.03 22.47 0.20 -0.71 16
18 C -0.03 -0.67 5.88 -20.04 -0.12 -0.79 16
19 C 0.21 4.29 7.94 137.37 1.09 5.38 16
20 N -0.30 -7.20 12.23 -52.18 -0.64 -7.84 16
21 N -0.06 -1.11 13.47 37.02 0.50 -0.61 16
22 N -0.20 -2.21 7.90 37.02 0.29 -1.92 16
23 H 0.50 0.31 8.96 -347.55 -3.12 -2.81 16
24 N -0.28 -4.26 12.08 -52.13 -0.63 -4.89 16
25 C -0.04 -0.49 9.70 22.47 0.22 -0.27 16
26 C -0.14 -1.80 10.01 22.28 0.22 -1.58 16
27 C 0.12 2.42 7.25 22.42 0.16 2.59 16
28 F -0.14 -3.08 16.79 44.97 0.76 -2.33 16
29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16
30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
31 H 0.07 2.43 8.00 -2.39 -0.02 2.41 16
32 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16
33 H 0.08 2.58 8.13 -2.39 -0.02 2.56 16
34 H 0.08 2.58 8.13 -2.39 -0.02 2.56 16
35 H 0.14 3.93 6.81 -2.91 -0.02 3.91 16
36 H 0.17 1.31 7.88 -2.91 -0.02 1.29 16
37 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16
Total: -1.00 -78.24 335.65 4.21 -74.03
By element:
Atomic # 1 Polarization: 7.14 SS G_CDS: -1.99 Total: 5.15 kcal
Atomic # 6 Polarization: -9.30 SS G_CDS: 3.87 Total: -5.43 kcal
Atomic # 7 Polarization: -73.96 SS G_CDS: -0.18 Total: -74.14 kcal
Atomic # 8 Polarization: -41.35 SS G_CDS: -0.10 Total: -41.45 kcal
Atomic # 9 Polarization: -3.08 SS G_CDS: 0.76 Total: -2.33 kcal
Atomic # 14 Polarization: 42.32 SS G_CDS: 1.85 Total: 44.17 kcal
Total: -78.24 4.21 -74.03 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589788465.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.051 kcal
(2) G-P(sol) polarization free energy of solvation -78.240 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds