Wall clock time and date at job start Tue Mar 31 2020 14:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 C 1.50701 * 109.46977 * 120.00002 * 2 1 3 5 5 H 1.08006 * 119.99982 * 119.99967 * 4 2 1 6 6 C 1.37880 * 120.00302 * 299.99819 * 4 2 1 7 7 N 1.31517 * 119.99686 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47293 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47183 * 120.00340 * 8 6 4 11 11 H 1.48504 * 109.46810 * 239.99666 * 8 6 4 12 12 C 1.50697 * 109.47120 * 239.99785 * 2 1 3 13 13 O 1.20827 * 120.00041 * 240.00161 * 12 2 1 14 14 O 1.34234 * 119.99827 * 60.00217 * 12 2 1 15 15 C 1.45202 * 116.99939 * 179.97438 * 14 12 2 16 16 C 1.50698 * 109.46798 * 179.97438 * 15 14 12 17 17 C 1.38002 * 119.95699 * 0.02562 * 16 15 14 18 18 C 1.39289 * 119.90564 * 180.02562 * 17 16 15 19 19 C 1.48454 * 120.09100 * 180.02562 * 18 17 16 20 20 N 1.34054 * 126.67459 * 359.65960 * 19 18 17 21 21 N 1.28985 * 107.26815 * 179.87253 * 20 19 18 22 22 N 1.28731 * 108.94401 * 0.39970 * 21 20 19 23 23 H 0.96995 * 125.34170 * 179.76628 * 22 21 20 24 24 N 1.28878 * 109.31917 * 359.74441 * 22 21 20 25 25 C 1.39335 * 119.81897 * 359.97438 * 18 17 16 26 26 C 1.37962 * 119.90788 * 0.02562 * 25 18 17 27 27 C 1.38532 * 119.95015 * 179.97438 * 16 15 14 28 28 F 1.35101 * 119.90830 * 359.97438 * 27 16 15 29 29 H 1.09006 * 109.46887 * 300.00120 * 1 2 3 30 30 H 1.08998 * 109.46824 * 59.99543 * 1 2 3 31 31 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99787 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46931 * 59.99702 * 15 14 12 34 34 H 1.09006 * 109.47263 * 300.00221 * 15 14 12 35 35 H 1.07999 * 120.04434 * 359.97226 * 17 16 15 36 36 H 1.08000 * 120.04688 * 179.72505 * 25 18 17 37 37 H 1.08000 * 119.95314 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1196 4.0080 9 1 3.1484 -2.2856 3.6038 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5866 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2277 -0.9857 -3.5896 16 6 1.7626 -0.3292 -4.8639 17 6 0.9662 0.7964 -4.8083 18 6 0.5365 1.4020 -5.9867 19 6 -0.3200 2.6133 -5.9317 20 7 -0.7632 3.2310 -4.8276 21 7 -1.4703 4.2395 -5.2108 22 7 -1.4922 4.2697 -6.4975 23 1 -1.9583 4.9287 -7.0354 24 7 -0.7973 3.2873 -6.9590 25 6 0.9136 0.8684 -7.2174 26 6 1.7100 -0.2572 -7.2641 27 6 2.1362 -0.8560 -6.0895 28 9 2.9173 -1.9571 -6.1396 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.7090 1.1614 3.4844 33 1 1.8643 -2.0129 -3.5568 34 1 3.3173 -0.9847 -3.5565 35 1 0.6757 1.2066 -3.8524 36 1 0.5789 1.3324 -8.1334 37 1 2.0024 -0.6716 -8.2176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:43 Heat of formation + Delta-G solvation = -5.668117 kcal Electronic energy + Delta-G solvation = -25659.399404 eV Core-core repulsion = 21546.662763 eV Total energy + Delta-G solvation = -4112.736641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.05828 -45.46288 -41.47793 -40.20406 -37.58320 -35.91732 -35.43132 -34.68583 -33.29478 -32.49367 -31.40314 -28.00717 -27.25837 -25.70770 -25.56046 -24.89254 -23.38438 -22.15554 -21.53903 -20.20251 -18.76746 -18.65375 -18.14293 -18.06609 -17.82719 -17.49291 -17.10911 -16.95802 -16.66960 -16.07112 -15.38081 -15.01390 -14.97905 -14.74510 -14.51507 -14.29245 -14.04214 -13.75117 -13.53323 -13.27896 -13.01528 -12.90277 -12.73722 -12.59017 -12.39827 -12.34790 -12.29135 -12.06423 -12.04430 -12.00016 -11.68450 -11.09077 -11.07027 -10.52461 -10.07124 -9.60536 -8.18637 -6.32109 -0.51457 0.07609 0.15666 1.16119 1.40353 1.42846 1.43190 1.43769 1.56000 1.76278 2.44660 2.49465 2.59363 3.08692 3.09163 3.11362 3.43173 3.73715 3.97952 4.06579 4.12992 4.14042 4.23039 4.41652 4.46172 4.67513 4.70750 4.87851 4.91591 4.98244 5.00619 5.13465 5.23155 5.40088 5.48027 5.63147 5.66619 5.70235 5.89967 6.11258 6.74515 7.00751 7.12384 7.36749 8.87974 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.003369 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.121422 B = 8309.858037 C =10331.919573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 H 0.052 0.948 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.476 3.524 13 O -0.540 6.540 14 O -0.354 6.354 15 C 0.103 3.897 16 C -0.133 4.133 17 C -0.039 4.039 18 C -0.035 4.035 19 C 0.209 3.791 20 N -0.299 5.299 21 N -0.058 5.058 22 N -0.197 5.197 23 H 0.495 0.505 24 N -0.283 5.283 25 C -0.036 4.036 26 C -0.135 4.135 27 C 0.121 3.879 28 F -0.136 7.136 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.174 0.826 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 5.447 -25.757 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.032 3.968 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.429 6.429 14 O -0.271 6.271 15 C 0.029 3.971 16 C -0.134 4.134 17 C -0.060 4.060 18 C -0.038 4.038 19 C -0.070 4.070 20 N -0.170 5.170 21 N -0.053 5.053 22 N -0.048 5.048 23 H 0.355 0.645 24 N -0.136 5.136 25 C -0.056 4.056 26 C -0.153 4.153 27 C 0.101 3.899 28 F -0.114 7.114 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.155 0.845 36 H 0.191 0.809 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.542 5.732 -25.312 26.348 hybrid contribution 0.512 -0.603 0.692 1.051 sum -4.030 5.129 -24.620 25.469 Atomic orbital electron populations 1.21557 0.94309 0.99884 1.02042 1.18694 0.95926 0.96204 0.85965 0.92989 1.21287 1.32640 1.13285 0.90457 0.92502 1.25642 0.94881 0.95638 1.01564 1.69977 1.36640 1.23359 1.24678 0.85415 0.78363 0.78521 0.78824 1.20077 1.19889 1.19791 1.24874 0.75978 0.82556 0.84444 1.90489 1.37384 1.27701 1.87294 1.86533 1.70009 1.55577 1.14999 1.21571 0.99178 0.95045 0.81325 1.19447 1.02810 0.98630 0.92525 1.20846 0.93415 0.92676 0.99036 1.17318 0.99610 0.92220 0.94678 1.23648 1.00348 0.98440 0.84611 1.76224 1.11071 1.03388 1.26361 1.78941 1.15336 1.15176 0.95882 1.47820 1.31867 1.20160 1.04975 0.64514 1.74822 1.11518 1.01398 1.25825 1.21309 0.93668 0.93585 0.97066 1.21328 0.99576 0.96633 0.97754 1.17691 0.93387 0.85226 0.93618 1.91525 1.71948 1.50681 1.97265 0.90407 0.93303 0.95194 0.92269 0.89889 0.89883 0.84500 0.80864 0.79941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.90 71.98 0.64 -5.18 16 2 C 0.05 2.68 2.74 -12.29 -0.03 2.65 16 3 H 0.05 2.84 8.14 -2.39 -0.02 2.82 16 4 C -0.54 -31.11 8.37 25.60 0.21 -30.89 16 5 H 0.06 3.44 6.76 -2.91 -0.02 3.42 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 C 0.48 22.90 7.25 71.23 0.52 23.41 16 13 O -0.54 -28.20 15.21 21.96 0.33 -27.87 16 14 O -0.35 -14.18 8.59 -51.46 -0.44 -14.62 16 15 C 0.10 3.37 5.43 71.24 0.39 3.75 16 16 C -0.13 -3.54 5.88 -19.85 -0.12 -3.66 16 17 C -0.04 -1.06 9.03 22.47 0.20 -0.86 16 18 C -0.03 -0.75 5.88 -20.04 -0.12 -0.87 16 19 C 0.21 4.76 7.94 137.38 1.09 5.85 16 20 N -0.30 -8.17 12.23 -52.18 -0.64 -8.81 16 21 N -0.06 -1.27 13.47 37.02 0.50 -0.77 16 22 N -0.20 -2.59 7.90 37.02 0.29 -2.29 16 23 H 0.50 1.13 8.96 -347.54 -3.12 -1.98 16 24 N -0.28 -4.75 12.08 -52.13 -0.63 -5.38 16 25 C -0.04 -0.53 9.70 22.47 0.22 -0.31 16 26 C -0.13 -1.91 10.01 22.28 0.22 -1.68 16 27 C 0.12 2.58 7.25 22.42 0.16 2.74 16 28 F -0.14 -3.10 16.79 44.97 0.76 -2.34 16 29 H 0.08 4.07 6.07 -2.38 -0.01 4.06 16 30 H 0.05 2.08 8.11 -2.39 -0.02 2.07 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.08 2.70 8.13 -2.38 -0.02 2.68 16 34 H 0.08 2.70 8.13 -2.38 -0.02 2.68 16 35 H 0.14 4.33 6.81 -2.91 -0.02 4.31 16 36 H 0.17 1.51 7.88 -2.91 -0.02 1.48 16 37 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -71.54 335.63 4.31 -67.23 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -1.96 Total: 2.64 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 3.84 Total: -3.34 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -0.23 Total: -68.16 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.11 Total: -42.49 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.76 Total: -2.34 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.54 4.31 -67.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.561 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds