Wall clock time and date at job start Tue Mar 31 2020 12:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37838 * 125.89500 * 2 1 4 4 C 1.47110 * 127.02274 * 0.02562 * 3 2 1 5 5 O 1.21549 * 120.00540 * 359.42342 * 4 3 2 6 6 O 1.34792 * 120.00093 * 179.70726 * 4 3 2 7 7 C 1.46746 * 105.95669 * 179.74233 * 3 2 1 8 8 C 1.34439 * 106.36778 * 0.24661 * 7 3 2 9 9 C 1.50700 * 125.45698 * 179.97438 * 8 7 3 10 10 N 1.46895 * 109.47205 * 95.01750 * 9 8 7 11 11 C 1.46901 * 111.00062 * 180.02562 * 10 9 8 12 12 H 1.09005 * 109.47361 * 34.99937 * 11 10 9 13 13 C 1.50701 * 109.47686 * 155.00245 * 11 10 9 14 14 H 1.07995 * 120.00144 * 114.72640 * 13 11 10 15 15 C 1.37881 * 119.99569 * 294.73048 * 13 11 10 16 16 N 1.31514 * 119.99530 * 184.82365 * 15 13 11 17 17 Si 1.86800 * 120.00207 * 4.82213 * 15 13 11 18 18 H 1.48493 * 109.47057 * 84.84383 * 17 15 13 19 19 H 1.48497 * 109.46902 * 204.84550 * 17 15 13 20 20 H 1.48505 * 109.46873 * 324.83960 * 17 15 13 21 21 C 1.53006 * 109.47331 * 275.00310 * 11 10 9 22 22 F 1.39902 * 109.46711 * 65.15591 * 21 11 10 23 23 F 1.39900 * 109.47373 * 185.15713 * 21 11 10 24 24 F 1.39894 * 109.46664 * 305.16114 * 21 11 10 25 25 N 1.34623 * 125.89889 * 180.15935 * 2 1 3 26 26 C 1.46501 * 124.80931 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.47512 * 90.02636 * 1 2 3 28 28 H 1.09013 * 109.46985 * 210.02012 * 1 2 3 29 29 H 1.08995 * 109.47479 * 330.01700 * 1 2 3 30 30 H 0.96698 * 117.00164 * 179.97438 * 6 4 3 31 31 H 1.07992 * 126.81828 * 180.21773 * 7 3 2 32 32 H 1.08997 * 109.47078 * 215.02232 * 9 8 7 33 33 H 1.09008 * 109.46725 * 335.02142 * 9 8 7 34 34 H 1.00894 * 111.00279 * 56.04942 * 10 9 8 35 35 H 0.97003 * 119.99675 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47253 * 270.30593 * 26 25 2 37 37 H 1.08993 * 109.47215 * 30.30883 * 26 25 2 38 38 H 1.09003 * 109.46976 * 150.31470 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.1166 0.0000 4 6 1.8830 2.5228 0.0005 5 8 0.6983 2.7947 -0.0096 6 8 2.8008 3.5099 0.0064 7 6 3.6946 0.6162 0.0063 8 6 3.6109 -0.7256 0.0040 9 6 4.7816 -1.6745 0.0081 10 7 5.0793 -2.0789 1.3886 11 6 6.2181 -3.0059 1.4316 12 1 6.9369 -2.7346 0.6584 13 6 6.8801 -2.9261 2.7831 14 1 6.8670 -3.7814 3.4422 15 6 7.5025 -1.7608 3.1781 16 7 8.1614 -1.7203 4.3155 17 14 7.4100 -0.2399 2.0975 18 1 6.1537 0.4971 2.3868 19 1 8.5746 0.6379 2.3777 20 1 7.4283 -0.6456 0.6691 21 6 5.7233 -4.4334 1.1897 22 9 5.2149 -4.5367 -0.1096 23 9 6.7869 -5.3285 1.3468 24 9 4.7158 -4.7399 2.1105 25 7 2.2963 -1.0905 -0.0030 26 6 1.8123 -2.4732 -0.0074 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8899 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 2.4688 4.4181 0.0061 31 1 4.5978 1.2082 0.0114 32 1 4.5367 -2.5562 -0.5841 33 1 5.6525 -1.1789 -0.4211 34 1 4.2670 -2.4829 1.8302 35 1 8.5996 -0.9007 4.5932 36 1 1.6867 -2.8175 1.0192 37 1 0.8552 -2.5215 -0.5265 38 1 2.5352 -3.1096 -0.5180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599994731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:28 Heat of formation + Delta-G solvation = -198.762663 kcal Electronic energy + Delta-G solvation = -28105.282189 eV Core-core repulsion = 23533.483154 eV Total energy + Delta-G solvation = -4571.799035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.42605 -46.99852 -46.80286 -41.47475 -39.53707 -36.31148 -35.85623 -32.93860 -32.83416 -31.72403 -29.41203 -27.21258 -26.46340 -24.98378 -24.01046 -22.49862 -21.10309 -20.55433 -18.68701 -18.23074 -17.84011 -17.74510 -17.20968 -16.66403 -16.29464 -15.91539 -15.45812 -15.13895 -14.58891 -14.35853 -14.09160 -13.85086 -13.80883 -13.51591 -13.36096 -13.25543 -13.12352 -13.04168 -13.02253 -12.87534 -12.61707 -12.50046 -12.41283 -12.11677 -11.84384 -11.55548 -11.41910 -11.35987 -10.72187 -10.66661 -10.40073 -10.01736 -9.59623 -8.74289 -8.63585 -8.16244 -7.82550 -6.24243 -4.38272 1.50404 2.38056 2.64818 3.35643 3.37302 3.44830 3.46180 3.53707 3.57140 4.41388 4.45650 4.61307 4.64495 4.71400 4.88096 4.89092 5.00858 5.02590 5.11429 5.27990 5.31891 5.38670 5.44377 5.56859 5.67461 5.83522 5.86140 5.98222 6.13432 6.31369 6.61630 6.81722 7.03949 7.11414 7.19000 7.53661 7.73039 8.12177 8.17208 8.71194 9.33103 10.84117 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.005034 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.751818 B = 5561.368279 C = 7059.249065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.117 3.883 3 C -0.237 4.237 4 C 0.563 3.437 5 O -0.539 6.539 6 O -0.512 6.512 7 C -0.122 4.122 8 C 0.022 3.978 9 C 0.100 3.900 10 N -0.663 5.663 11 C 0.156 3.844 12 H 0.082 0.918 13 C -0.524 4.524 14 H 0.083 0.917 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.919 3.081 18 H -0.263 1.263 19 H -0.309 1.309 20 H -0.274 1.274 21 C 0.421 3.579 22 F -0.210 7.210 23 F -0.181 7.181 24 F -0.189 7.189 25 N -0.430 5.430 26 C 0.061 3.939 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.407 0.593 31 H 0.149 0.851 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.339 0.661 35 H 0.270 0.730 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 1.880 -10.791 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.002 4.002 3 C -0.245 4.245 4 C 0.410 3.590 5 O -0.431 6.431 6 O -0.322 6.322 7 C -0.146 4.146 8 C -0.085 4.085 9 C -0.029 4.029 10 N -0.296 5.296 11 C 0.048 3.952 12 H 0.099 0.901 13 C -0.562 4.562 14 H 0.101 0.899 15 C -0.111 4.111 16 N -0.515 5.515 17 Si 0.749 3.251 18 H -0.188 1.188 19 H -0.237 1.237 20 H -0.200 1.200 21 C 0.365 3.635 22 F -0.191 7.191 23 F -0.163 7.163 24 F -0.171 7.171 25 N -0.106 5.106 26 C -0.080 4.080 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.264 0.736 31 H 0.167 0.833 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.840 1.799 -10.536 15.951 hybrid contribution -0.702 0.267 -0.731 1.048 sum -12.543 2.067 -11.267 16.986 Atomic orbital electron populations 1.20569 0.86932 1.04268 1.03293 1.20438 0.93373 0.84929 1.01432 1.19185 0.93875 0.88406 1.23061 1.19807 0.82658 0.85377 0.71145 1.90817 1.18438 1.84723 1.49134 1.84636 1.42203 1.19243 1.86117 1.21810 0.95578 0.92358 1.04825 1.20206 0.83424 0.94882 1.10037 1.20873 0.93855 0.95705 0.92483 1.61374 1.09747 1.44642 1.13886 1.21157 0.91125 0.79778 1.03180 0.90060 1.20438 1.34912 1.01729 0.99104 0.89851 1.24863 0.92335 0.98934 0.94990 1.69908 1.31558 1.28358 1.21678 0.86242 0.76980 0.81796 0.80094 1.18767 1.23694 1.19974 1.22488 0.75217 0.93866 0.71931 1.93050 1.88332 1.97141 1.40622 1.93124 1.56602 1.71380 1.95175 1.93076 1.62450 1.94528 1.67053 1.43472 1.05675 1.06122 1.55287 1.22180 1.01604 0.80086 1.04177 0.90415 0.91461 0.88319 0.73577 0.83306 0.93690 0.88548 0.83987 0.92053 0.90063 0.89479 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.27 36.00 0.33 -0.65 16 2 C 0.12 1.60 6.93 -81.52 -0.56 1.03 16 3 C -0.24 -3.69 6.33 -103.01 -0.65 -4.34 16 4 C 0.56 8.38 8.32 34.33 0.29 8.66 16 5 O -0.54 -8.55 15.67 -19.30 -0.30 -8.85 16 6 O -0.51 -6.38 13.33 -40.74 -0.54 -6.92 16 7 C -0.12 -2.01 10.89 -37.49 -0.41 -2.41 16 8 C 0.02 0.34 6.35 -81.89 -0.52 -0.18 16 9 C 0.10 1.62 5.20 -4.98 -0.03 1.59 16 10 N -0.66 -12.73 4.14 -109.21 -0.45 -13.18 16 11 C 0.16 3.30 1.47 -68.86 -0.10 3.20 16 12 H 0.08 1.70 6.74 -51.93 -0.35 1.35 16 13 C -0.52 -13.59 8.80 -34.44 -0.30 -13.90 16 14 H 0.08 2.39 7.95 -52.49 -0.42 1.98 16 15 C 0.10 2.60 5.47 -17.82 -0.10 2.50 16 16 N -0.88 -25.51 13.96 55.43 0.77 -24.74 16 17 Si 0.92 21.55 25.74 -169.99 -4.38 17.18 16 18 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.31 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.27 -5.93 5.69 56.52 0.32 -5.61 16 21 C 0.42 8.14 2.76 37.16 0.10 8.25 16 22 F -0.21 -3.53 15.24 2.25 0.03 -3.50 16 23 F -0.18 -3.75 16.86 2.25 0.04 -3.72 16 24 F -0.19 -3.66 16.22 2.25 0.04 -3.62 16 25 N -0.43 -5.72 3.08 -115.00 -0.35 -6.08 16 26 C 0.06 0.59 10.39 59.85 0.62 1.21 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.56 7.60 -51.92 -0.39 0.16 16 29 H 0.10 1.16 6.52 -51.93 -0.34 0.82 16 30 H 0.41 2.95 9.11 45.56 0.42 3.36 16 31 H 0.15 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.05 0.66 5.12 -51.93 -0.27 0.40 16 33 H 0.10 1.60 7.00 -51.92 -0.36 1.24 16 34 H 0.34 6.26 7.70 -39.29 -0.30 5.96 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.61 7.51 -51.93 -0.39 0.22 16 38 H 0.09 0.87 6.98 -51.93 -0.36 0.50 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -31.53 331.21 -4.74 -36.26 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.25 Total: 7.20 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.33 Total: 4.97 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.03 Total: -44.00 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.85 Total: -15.77 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 0.11 Total: -10.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.38 Total: 17.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.53 -4.74 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599994731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.498 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds