Wall clock time and date at job start Tue Mar 31 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37838 * 125.89500 * 2 1 4 4 C 1.47110 * 127.02274 * 0.02562 * 3 2 1 5 5 O 1.21549 * 120.00540 * 359.42342 * 4 3 2 6 6 O 1.34792 * 120.00093 * 179.70726 * 4 3 2 7 7 C 1.46746 * 105.95669 * 179.74233 * 3 2 1 8 8 C 1.34439 * 106.36778 * 0.24661 * 7 3 2 9 9 C 1.50700 * 125.45698 * 179.97438 * 8 7 3 10 10 N 1.46895 * 109.47205 * 95.01750 * 9 8 7 11 11 C 1.46901 * 111.00062 * 180.02562 * 10 9 8 12 12 H 1.09005 * 109.47361 * 34.99937 * 11 10 9 13 13 C 1.50701 * 109.47686 * 155.00245 * 11 10 9 14 14 H 1.07995 * 120.00144 * 114.72640 * 13 11 10 15 15 C 1.37881 * 119.99569 * 294.73048 * 13 11 10 16 16 N 1.31514 * 119.99530 * 184.82365 * 15 13 11 17 17 Si 1.86800 * 120.00207 * 4.82213 * 15 13 11 18 18 H 1.48493 * 109.47057 * 84.84383 * 17 15 13 19 19 H 1.48497 * 109.46902 * 204.84550 * 17 15 13 20 20 H 1.48505 * 109.46873 * 324.83960 * 17 15 13 21 21 C 1.53006 * 109.47331 * 275.00310 * 11 10 9 22 22 F 1.39902 * 109.46711 * 65.15591 * 21 11 10 23 23 F 1.39900 * 109.47373 * 185.15713 * 21 11 10 24 24 F 1.39894 * 109.46664 * 305.16114 * 21 11 10 25 25 N 1.34623 * 125.89889 * 180.15935 * 2 1 3 26 26 C 1.46501 * 124.80931 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.47512 * 90.02636 * 1 2 3 28 28 H 1.09013 * 109.46985 * 210.02012 * 1 2 3 29 29 H 1.08995 * 109.47479 * 330.01700 * 1 2 3 30 30 H 0.96698 * 117.00164 * 179.97438 * 6 4 3 31 31 H 1.07992 * 126.81828 * 180.21773 * 7 3 2 32 32 H 1.08997 * 109.47078 * 215.02232 * 9 8 7 33 33 H 1.09008 * 109.46725 * 335.02142 * 9 8 7 34 34 H 1.00894 * 111.00279 * 56.04942 * 10 9 8 35 35 H 0.97003 * 119.99675 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47253 * 270.30593 * 26 25 2 37 37 H 1.08993 * 109.47215 * 30.30883 * 26 25 2 38 38 H 1.09003 * 109.46976 * 150.31470 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.1166 0.0000 4 6 1.8830 2.5228 0.0005 5 8 0.6983 2.7947 -0.0096 6 8 2.8008 3.5099 0.0064 7 6 3.6946 0.6162 0.0063 8 6 3.6109 -0.7256 0.0040 9 6 4.7816 -1.6745 0.0081 10 7 5.0793 -2.0789 1.3886 11 6 6.2181 -3.0059 1.4316 12 1 6.9369 -2.7346 0.6584 13 6 6.8801 -2.9261 2.7831 14 1 6.8670 -3.7814 3.4422 15 6 7.5025 -1.7608 3.1781 16 7 8.1614 -1.7203 4.3155 17 14 7.4100 -0.2399 2.0975 18 1 6.1537 0.4971 2.3868 19 1 8.5746 0.6379 2.3777 20 1 7.4283 -0.6456 0.6691 21 6 5.7233 -4.4334 1.1897 22 9 5.2149 -4.5367 -0.1096 23 9 6.7869 -5.3285 1.3468 24 9 4.7158 -4.7399 2.1105 25 7 2.2963 -1.0905 -0.0030 26 6 1.8123 -2.4732 -0.0074 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8899 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 2.4688 4.4181 0.0061 31 1 4.5978 1.2082 0.0114 32 1 4.5367 -2.5562 -0.5841 33 1 5.6525 -1.1789 -0.4211 34 1 4.2670 -2.4829 1.8302 35 1 8.5996 -0.9007 4.5932 36 1 1.6867 -2.8175 1.0192 37 1 0.8552 -2.5215 -0.5265 38 1 2.5352 -3.1096 -0.5180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599994731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:27 Heat of formation + Delta-G solvation = -220.384256 kcal Electronic energy + Delta-G solvation = -28106.219771 eV Core-core repulsion = 23533.483154 eV Total energy + Delta-G solvation = -4572.736617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.97857 -48.50146 -48.41180 -42.53509 -40.60707 -37.85903 -36.92593 -34.68036 -33.88057 -33.05275 -30.82038 -28.20719 -27.64878 -26.80548 -25.23746 -23.56577 -22.80686 -21.66043 -20.04410 -19.59298 -19.33314 -18.90534 -18.77622 -18.33127 -17.63842 -16.96110 -16.51889 -16.28503 -16.22072 -15.67810 -15.50672 -15.40068 -15.08287 -14.93720 -14.89019 -14.68461 -14.61201 -14.47376 -14.20837 -14.00294 -13.92063 -13.65274 -13.53753 -13.28338 -12.99406 -12.84676 -12.64615 -12.57647 -12.45911 -12.33206 -11.77997 -11.61228 -11.49529 -10.79792 -9.71360 -9.53466 -9.09626 -8.32032 -6.48852 0.44431 1.20286 1.47049 1.59170 1.66741 1.69282 1.95099 2.25293 2.44932 2.47960 2.84373 3.08043 3.31517 3.34834 3.60454 3.69625 3.70440 3.92639 4.01915 4.27220 4.31423 4.46698 4.49583 4.55296 4.63851 4.69332 4.70824 4.84928 5.03927 5.19431 5.25465 5.64863 5.70773 5.88891 5.98968 6.02404 6.20182 6.32574 6.61663 7.15311 7.25790 8.80109 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.005034 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.751818 B = 5561.368279 C = 7059.249065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.128 3.872 3 C -0.269 4.269 4 C 0.562 3.438 5 O -0.555 6.555 6 O -0.513 6.513 7 C -0.140 4.140 8 C 0.011 3.989 9 C 0.106 3.894 10 N -0.673 5.673 11 C 0.162 3.838 12 H 0.091 0.909 13 C -0.523 4.523 14 H 0.044 0.956 15 C 0.046 3.954 16 N -0.932 5.932 17 Si 0.975 3.025 18 H -0.268 1.268 19 H -0.318 1.318 20 H -0.244 1.244 21 C 0.429 3.571 22 F -0.189 7.189 23 F -0.191 7.191 24 F -0.189 7.189 25 N -0.426 5.426 26 C 0.052 3.948 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.427 0.573 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.345 0.655 35 H 0.270 0.730 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 1.732 -12.913 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.277 4.277 4 C 0.410 3.590 5 O -0.449 6.449 6 O -0.326 6.326 7 C -0.164 4.164 8 C -0.097 4.097 9 C -0.022 4.022 10 N -0.306 5.306 11 C 0.052 3.948 12 H 0.109 0.891 13 C -0.561 4.561 14 H 0.062 0.938 15 C -0.156 4.156 16 N -0.569 5.569 17 Si 0.803 3.197 18 H -0.193 1.193 19 H -0.247 1.247 20 H -0.167 1.167 21 C 0.373 3.627 22 F -0.170 7.170 23 F -0.172 7.172 24 F -0.171 7.171 25 N -0.101 5.101 26 C -0.088 4.088 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.288 0.712 31 H 0.159 0.841 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.736 1.637 -12.686 18.769 hybrid contribution -0.187 0.266 -0.076 0.334 sum -13.923 1.903 -12.762 18.983 Atomic orbital electron populations 1.20648 0.84590 1.04893 1.04561 1.20940 0.94716 0.84468 0.99161 1.19467 0.93978 0.89436 1.24858 1.19800 0.82596 0.85691 0.70863 1.90802 1.18926 1.85038 1.50150 1.84591 1.41932 1.20496 1.85626 1.21907 0.95961 0.93019 1.05547 1.20031 0.84339 0.94414 1.10906 1.20820 0.94310 0.96562 0.90520 1.60989 1.09448 1.43855 1.16322 1.20862 0.91977 0.81425 1.00539 0.89114 1.20551 1.34980 1.00086 1.00489 0.93819 1.25639 0.92151 1.01809 0.95998 1.70031 1.33754 1.29160 1.23955 0.85338 0.76047 0.78124 0.80207 1.19327 1.24707 1.16747 1.22104 0.75107 0.92757 0.72731 1.93085 1.87959 1.97002 1.38987 1.93112 1.57220 1.71590 1.95316 1.93081 1.62280 1.94442 1.67256 1.43660 1.04801 1.07431 1.54207 1.22502 1.03220 0.78023 1.05089 0.88678 0.88798 0.89674 0.71171 0.84074 0.91630 0.88669 0.83422 0.92148 0.89567 0.86272 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.27 71.24 0.66 -0.93 16 2 C 0.13 3.16 6.93 42.04 0.29 3.45 16 3 C -0.27 -8.01 6.33 -18.82 -0.12 -8.13 16 4 C 0.56 16.15 8.32 70.15 0.58 16.73 16 5 O -0.56 -16.98 15.67 19.68 0.31 -16.67 16 6 O -0.51 -12.24 13.33 -57.03 -0.76 -13.00 16 7 C -0.14 -4.42 10.89 23.63 0.26 -4.16 16 8 C 0.01 0.31 6.35 40.97 0.26 0.57 16 9 C 0.11 3.14 5.20 85.56 0.45 3.59 16 10 N -0.67 -24.43 4.14 -499.45 -2.07 -26.50 16 11 C 0.16 6.58 1.47 44.17 0.06 6.64 16 12 H 0.09 3.57 6.74 -2.38 -0.02 3.55 16 13 C -0.52 -27.35 8.80 25.60 0.23 -27.12 16 14 H 0.04 2.59 7.95 -2.91 -0.02 2.56 16 15 C 0.05 2.51 5.47 84.66 0.46 2.98 16 16 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 17 Si 0.98 44.32 25.74 68.60 1.77 46.09 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.32 -14.85 7.11 99.48 0.71 -14.15 16 20 H -0.24 -9.70 5.69 99.48 0.57 -9.13 16 21 C 0.43 15.80 2.76 71.98 0.20 16.00 16 22 F -0.19 -5.74 15.24 44.97 0.69 -5.05 16 23 F -0.19 -7.70 16.86 44.97 0.76 -6.94 16 24 F -0.19 -7.00 16.22 44.97 0.73 -6.27 16 25 N -0.43 -10.07 3.08 -517.76 -1.60 -11.66 16 26 C 0.05 0.80 10.39 127.77 1.33 2.13 16 27 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.09 1.16 7.60 -2.38 -0.02 1.15 16 29 H 0.08 1.82 6.52 -2.39 -0.02 1.80 16 30 H 0.43 5.61 9.11 -74.06 -0.67 4.94 16 31 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.07 1.68 5.12 -2.39 -0.01 1.66 16 33 H 0.10 2.86 7.00 -2.38 -0.02 2.84 16 34 H 0.34 12.00 7.70 -89.70 -0.69 11.31 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.09 7.51 -2.39 -0.02 1.07 16 38 H 0.09 1.41 6.98 -2.39 -0.02 1.39 16 Total: -1.00 -69.04 331.21 4.42 -64.61 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.36 Total: 18.93 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 4.66 Total: 11.73 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -3.37 Total: -93.43 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.45 Total: -29.66 kcal Atomic # 9 Polarization: -20.44 SS G_CDS: 2.17 Total: -18.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.77 Total: 46.09 kcal Total: -69.04 4.42 -64.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599994731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.773 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds