Wall clock time and date at job start Tue Mar 31 2020 13:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 115.55371 * 2 1 4 4 C 1.52998 * 117.49506 * 214.32553 * 2 1 3 5 5 C 1.53006 * 117.49394 * 145.70423 * 2 1 3 6 6 C 1.50702 * 117.49927 * 0.02562 * 5 2 1 7 7 O 1.20819 * 120.00072 * 359.97438 * 6 5 2 8 8 O 1.34227 * 119.99760 * 179.97438 * 6 5 2 9 9 C 1.50699 * 117.49886 * 214.97519 * 5 2 1 10 10 O 1.20833 * 119.99770 * 0.02562 * 9 5 2 11 11 O 1.34221 * 120.00107 * 180.02562 * 9 5 2 12 12 C 1.45199 * 117.00389 * 180.02562 * 11 9 5 13 13 C 1.50696 * 109.47446 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.92701 * 269.72319 * 13 12 11 15 15 C 1.38106 * 120.06239 * 179.72544 * 14 13 12 16 16 C 1.38874 * 119.93413 * 0.57393 * 15 14 13 17 17 O 1.35749 * 120.07024 * 179.68278 * 16 15 14 18 18 C 1.34830 * 116.99900 * 174.48507 * 17 16 15 19 19 H 1.08005 * 120.00293 * 5.05980 * 18 17 16 20 20 C 1.38657 * 120.00048 * 185.05799 * 18 17 16 21 21 N 1.31554 * 119.99593 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47005 * 89.99752 * 22 20 18 24 24 H 1.48499 * 109.47016 * 209.99759 * 22 20 18 25 25 H 1.48497 * 109.47019 * 329.99854 * 22 20 18 26 26 C 1.38885 * 119.86144 * 359.69775 * 16 15 14 27 27 C 1.38100 * 119.92890 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47993 * 154.27969 * 1 2 3 29 29 H 1.09001 * 109.46899 * 34.27776 * 1 2 3 30 30 H 1.09004 * 109.47595 * 274.28782 * 1 2 3 31 31 H 1.09005 * 117.50311 * 359.97438 * 4 2 1 32 32 H 1.08996 * 117.50070 * 145.02482 * 4 2 1 33 33 H 0.96694 * 117.00142 * 179.97438 * 8 6 5 34 34 H 1.09009 * 109.46773 * 299.99880 * 12 11 9 35 35 H 1.09004 * 109.47194 * 59.99611 * 12 11 9 36 36 H 1.07992 * 119.96693 * 359.97438 * 14 13 12 37 37 H 1.08001 * 120.03052 * 180.27283 * 15 14 13 38 38 H 0.97001 * 119.99887 * 179.97438 * 21 20 18 39 39 H 1.07993 * 120.03243 * 180.02562 * 26 16 15 40 40 H 1.08005 * 119.96304 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2363 -1.1208 -0.7653 5 6 2.2363 -1.1213 0.7648 6 6 1.3718 -2.1414 1.4598 7 8 0.1682 -2.0543 1.4004 8 8 1.9390 -3.1467 2.1448 9 6 3.5292 -0.7817 1.4607 10 8 3.9699 0.3418 1.4019 11 8 4.1911 -1.7273 2.1457 12 6 5.4291 -1.3288 2.7913 13 6 6.0268 -2.5131 3.5061 14 6 5.6952 -2.7621 4.8255 15 6 6.2369 -3.8499 5.4816 16 6 7.1247 -4.6873 4.8188 17 8 7.6638 -5.7537 5.4630 18 6 8.4270 -6.5896 4.7304 19 1 8.6529 -6.3525 3.7013 20 6 8.9220 -7.7537 5.2984 21 7 8.6472 -8.0422 6.5521 22 14 9.9800 -8.9115 4.2837 23 1 11.4080 -8.5297 4.4258 24 1 9.7898 -10.3040 4.7630 25 1 9.5832 -8.8210 2.8555 26 6 7.4600 -4.4313 3.4956 27 6 6.9105 -3.3452 2.8432 28 1 -0.3635 -0.9258 -0.4460 29 1 -0.3633 0.8492 -0.5788 30 1 -0.3634 0.0768 1.0248 31 1 1.6111 -1.8585 -1.2684 32 1 3.1714 -0.8750 -1.2685 33 1 1.3436 -3.7762 2.5742 34 1 6.1306 -0.9666 2.0396 35 1 5.2250 -0.5351 3.5101 36 1 5.0088 -2.1075 5.3419 37 1 5.9742 -4.0464 6.5105 38 1 8.9931 -8.8568 6.9494 39 1 8.1498 -5.0810 2.9774 40 1 7.1713 -3.1454 1.8144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605025904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:27 Heat of formation + Delta-G solvation = -145.705445 kcal Electronic energy + Delta-G solvation = -25988.938185 eV Core-core repulsion = 21929.003873 eV Total energy + Delta-G solvation = -4059.934312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39946 -40.06310 -39.10030 -37.92368 -36.84514 -36.09790 -35.87975 -32.45584 -30.72189 -30.25634 -29.43750 -26.65728 -25.77249 -24.79789 -23.00274 -22.06966 -21.65471 -20.61606 -20.10945 -18.72826 -18.08874 -17.79213 -17.21696 -16.75785 -16.50527 -15.77654 -15.44723 -14.95898 -14.67701 -14.55924 -14.14300 -13.87550 -13.73272 -13.55471 -13.42152 -13.03906 -12.92447 -12.79508 -12.63187 -12.32508 -12.02447 -11.75178 -11.72410 -11.41560 -11.21717 -11.06042 -10.91580 -10.83794 -10.73102 -10.51966 -10.47275 -10.45040 -10.39008 -9.42331 -8.92027 -8.27354 -7.34227 -6.53623 -4.12215 1.54858 1.88009 2.04173 2.15025 2.63757 2.75660 3.08594 3.09583 3.14223 3.14418 3.89993 3.93716 4.14063 4.33667 4.60831 4.76697 4.88465 5.01578 5.12819 5.13365 5.16906 5.21771 5.22667 5.36800 5.51780 5.58052 5.63553 5.67800 5.75722 6.00108 6.11999 6.30635 6.32170 6.40030 6.58662 6.79918 6.95760 7.14081 7.26051 7.34580 7.60504 7.70288 7.71976 7.91224 8.91685 9.59670 10.63854 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.002515 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.706682 B =11130.892916 C =11372.941531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 H 0.134 0.866 4 C -0.117 4.117 5 C -0.159 4.159 6 C 0.523 3.477 7 O -0.507 6.507 8 O -0.485 6.485 9 C 0.500 3.500 10 O -0.506 6.506 11 O -0.325 6.325 12 C 0.128 3.872 13 C -0.202 4.202 14 C -0.046 4.046 15 C -0.196 4.196 16 C 0.163 3.837 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.238 4.238 27 C -0.043 4.043 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.414 0.586 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.369 12.406 -12.772 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.098 4.098 3 H 0.151 0.849 4 C -0.154 4.154 5 C -0.162 4.162 6 C 0.365 3.635 7 O -0.396 6.396 8 O -0.295 6.295 9 C 0.342 3.658 10 O -0.395 6.395 11 O -0.240 6.240 12 C 0.055 3.945 13 C -0.203 4.203 14 C -0.065 4.065 15 C -0.215 4.215 16 C 0.109 3.891 17 O -0.074 6.074 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.273 0.727 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.196 12.723 -12.533 21.626 hybrid contribution 0.411 -1.044 -0.066 1.124 sum -11.785 11.679 -12.599 20.833 Atomic orbital electron populations 1.21510 0.90241 1.02402 1.03341 1.22775 0.96910 0.94125 0.96015 0.84857 1.23410 1.04213 1.01530 0.86208 1.20698 0.95221 1.03204 0.97039 1.21479 0.86039 0.80129 0.75838 1.90737 1.15456 1.74244 1.59139 1.84680 1.44833 1.37434 1.62599 1.21745 0.84056 0.83306 0.76670 1.90669 1.67513 1.22212 1.59122 1.86760 1.36695 1.40172 1.60411 1.21792 0.81735 0.95715 0.95223 1.18808 1.05452 1.01067 0.94949 1.20491 0.96965 0.95537 0.93501 1.20186 1.02669 0.97722 1.00938 1.19436 0.90615 0.88357 0.90725 1.83977 1.56547 1.30402 1.36511 1.21370 1.28130 1.01011 0.96411 0.88874 1.25327 0.97857 0.96876 0.96410 1.70036 1.42252 1.25138 1.11888 0.85689 0.79457 0.78919 0.79256 1.19794 1.20175 1.19099 1.21133 1.07279 1.01321 0.95956 1.20604 0.94663 0.92993 0.97904 0.91295 0.91808 0.90852 0.86327 0.86272 0.72663 0.91127 0.91133 0.86974 0.86248 0.91861 0.85291 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.43 37.16 0.31 -0.62 16 2 C -0.08 -0.68 5.92 -90.62 -0.54 -1.22 16 3 H 0.13 1.10 7.67 -51.94 -0.40 0.70 16 4 C -0.12 -0.90 9.58 -26.73 -0.26 -1.15 16 5 C -0.16 -1.72 2.59 -156.81 -0.41 -2.12 16 6 C 0.52 5.94 7.84 36.01 0.28 6.22 16 7 O -0.51 -6.19 13.87 -18.74 -0.26 -6.45 16 8 O -0.49 -5.34 11.97 -45.55 -0.55 -5.88 16 9 C 0.50 6.70 7.49 36.00 0.27 6.97 16 10 O -0.51 -7.49 16.01 -18.76 -0.30 -7.79 16 11 O -0.33 -4.82 8.75 -45.53 -0.40 -5.21 16 12 C 0.13 1.87 5.59 36.00 0.20 2.07 16 13 C -0.20 -3.45 5.52 -104.58 -0.58 -4.02 16 14 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 15 C -0.20 -4.02 9.99 -39.39 -0.39 -4.42 16 16 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 17 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 18 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 19 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.24 -5.01 9.17 -39.39 -0.36 -5.37 16 27 C -0.04 -0.78 9.69 -39.61 -0.38 -1.16 16 28 H 0.07 0.57 7.02 -51.93 -0.36 0.20 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.68 7.26 -51.93 -0.38 0.31 16 31 H 0.12 0.74 8.05 -51.93 -0.42 0.33 16 32 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.41 2.75 9.10 45.56 0.41 3.16 16 34 H 0.07 0.96 8.08 -51.92 -0.42 0.54 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 39 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 40 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -32.85 352.89 -6.54 -39.40 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.80 Total: 6.16 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.30 Total: -11.86 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.76 Total: -23.87 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.50 Total: -30.11 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.85 -6.54 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605025904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.310 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds