Wall clock time and date at job start Tue Mar 31 2020 13:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 115.55371 * 2 1 4 4 C 1.52998 * 117.49506 * 214.32553 * 2 1 3 5 5 C 1.53006 * 117.49394 * 145.70423 * 2 1 3 6 6 C 1.50702 * 117.49927 * 0.02562 * 5 2 1 7 7 O 1.20819 * 120.00072 * 359.97438 * 6 5 2 8 8 O 1.34227 * 119.99760 * 179.97438 * 6 5 2 9 9 C 1.50699 * 117.49886 * 214.97519 * 5 2 1 10 10 O 1.20833 * 119.99770 * 0.02562 * 9 5 2 11 11 O 1.34221 * 120.00107 * 180.02562 * 9 5 2 12 12 C 1.45199 * 117.00389 * 180.02562 * 11 9 5 13 13 C 1.50696 * 109.47446 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.92701 * 269.72319 * 13 12 11 15 15 C 1.38106 * 120.06239 * 179.72544 * 14 13 12 16 16 C 1.38874 * 119.93413 * 0.57393 * 15 14 13 17 17 O 1.35749 * 120.07024 * 179.68278 * 16 15 14 18 18 C 1.34830 * 116.99900 * 174.48507 * 17 16 15 19 19 H 1.08005 * 120.00293 * 5.05980 * 18 17 16 20 20 C 1.38657 * 120.00048 * 185.05799 * 18 17 16 21 21 N 1.31554 * 119.99593 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47005 * 89.99752 * 22 20 18 24 24 H 1.48499 * 109.47016 * 209.99759 * 22 20 18 25 25 H 1.48497 * 109.47019 * 329.99854 * 22 20 18 26 26 C 1.38885 * 119.86144 * 359.69775 * 16 15 14 27 27 C 1.38100 * 119.92890 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47993 * 154.27969 * 1 2 3 29 29 H 1.09001 * 109.46899 * 34.27776 * 1 2 3 30 30 H 1.09004 * 109.47595 * 274.28782 * 1 2 3 31 31 H 1.09005 * 117.50311 * 359.97438 * 4 2 1 32 32 H 1.08996 * 117.50070 * 145.02482 * 4 2 1 33 33 H 0.96694 * 117.00142 * 179.97438 * 8 6 5 34 34 H 1.09009 * 109.46773 * 299.99880 * 12 11 9 35 35 H 1.09004 * 109.47194 * 59.99611 * 12 11 9 36 36 H 1.07992 * 119.96693 * 359.97438 * 14 13 12 37 37 H 1.08001 * 120.03052 * 180.27283 * 15 14 13 38 38 H 0.97001 * 119.99887 * 179.97438 * 21 20 18 39 39 H 1.07993 * 120.03243 * 180.02562 * 26 16 15 40 40 H 1.08005 * 119.96304 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2363 -1.1208 -0.7653 5 6 2.2363 -1.1213 0.7648 6 6 1.3718 -2.1414 1.4598 7 8 0.1682 -2.0543 1.4004 8 8 1.9390 -3.1467 2.1448 9 6 3.5292 -0.7817 1.4607 10 8 3.9699 0.3418 1.4019 11 8 4.1911 -1.7273 2.1457 12 6 5.4291 -1.3288 2.7913 13 6 6.0268 -2.5131 3.5061 14 6 5.6952 -2.7621 4.8255 15 6 6.2369 -3.8499 5.4816 16 6 7.1247 -4.6873 4.8188 17 8 7.6638 -5.7537 5.4630 18 6 8.4270 -6.5896 4.7304 19 1 8.6529 -6.3525 3.7013 20 6 8.9220 -7.7537 5.2984 21 7 8.6472 -8.0422 6.5521 22 14 9.9800 -8.9115 4.2837 23 1 11.4080 -8.5297 4.4258 24 1 9.7898 -10.3040 4.7630 25 1 9.5832 -8.8210 2.8555 26 6 7.4600 -4.4313 3.4956 27 6 6.9105 -3.3452 2.8432 28 1 -0.3635 -0.9258 -0.4460 29 1 -0.3633 0.8492 -0.5788 30 1 -0.3634 0.0768 1.0248 31 1 1.6111 -1.8585 -1.2684 32 1 3.1714 -0.8750 -1.2685 33 1 1.3436 -3.7762 2.5742 34 1 6.1306 -0.9666 2.0396 35 1 5.2250 -0.5351 3.5101 36 1 5.0088 -2.1075 5.3419 37 1 5.9742 -4.0464 6.5105 38 1 8.9931 -8.8568 6.9494 39 1 8.1498 -5.0810 2.9774 40 1 7.1713 -3.1454 1.8144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605025904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:27 Heat of formation + Delta-G solvation = -165.389263 kcal Electronic energy + Delta-G solvation = -25989.791740 eV Core-core repulsion = 21929.003873 eV Total energy + Delta-G solvation = -4060.787866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29648 -41.11786 -40.71508 -38.92412 -38.23739 -37.22917 -36.81157 -34.36604 -32.19503 -31.82601 -30.19907 -27.95127 -27.16720 -26.16470 -23.97972 -23.68332 -22.43376 -22.10852 -20.93906 -19.90850 -19.64843 -18.91941 -18.71060 -17.92012 -17.56049 -16.72268 -16.50785 -16.27463 -16.20657 -16.02905 -15.56169 -15.26332 -15.03206 -14.68449 -14.45109 -14.32653 -14.08574 -13.88210 -13.60551 -13.60163 -13.49903 -13.03714 -12.71967 -12.59210 -12.55899 -12.43332 -12.24529 -12.12195 -12.01717 -11.71068 -11.62721 -11.39045 -11.19835 -11.17229 -10.81513 -9.82989 -9.05317 -8.48793 -6.17115 0.41168 0.56659 0.71597 1.08224 1.36216 1.43458 1.53500 1.64966 1.90159 2.17195 2.41519 2.80236 3.12251 3.20245 3.45544 3.47002 3.58468 3.87579 3.91933 4.04072 4.14791 4.27013 4.29923 4.35191 4.49876 4.55156 4.62168 4.74260 4.80364 4.93319 4.99382 5.08492 5.12342 5.23035 5.30599 5.35328 5.51228 5.59599 5.66504 5.69589 6.00481 6.12634 6.57734 6.93591 6.95827 7.74102 8.73966 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.002515 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.706682 B =11130.892916 C =11372.941531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 H 0.138 0.862 4 C -0.097 4.097 5 C -0.183 4.183 6 C 0.525 3.475 7 O -0.520 6.520 8 O -0.497 6.497 9 C 0.503 3.497 10 O -0.521 6.521 11 O -0.336 6.336 12 C 0.127 3.873 13 C -0.178 4.178 14 C -0.040 4.040 15 C -0.205 4.205 16 C 0.126 3.874 17 O -0.227 6.227 18 C -0.415 4.415 19 H 0.104 0.896 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.245 4.245 27 C -0.041 4.041 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.429 0.571 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.273 0.727 39 H 0.124 0.876 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 14.260 -15.720 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 H 0.156 0.844 4 C -0.134 4.134 5 C -0.185 4.185 6 C 0.368 3.632 7 O -0.411 6.411 8 O -0.310 6.310 9 C 0.347 3.653 10 O -0.411 6.411 11 O -0.251 6.251 12 C 0.055 3.945 13 C -0.179 4.179 14 C -0.058 4.058 15 C -0.225 4.225 16 C 0.075 3.925 17 O -0.133 6.133 18 C -0.491 4.491 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.175 1.175 26 C -0.264 4.264 27 C -0.059 4.059 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.291 0.709 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.030 14.623 -15.505 24.981 hybrid contribution 0.427 -1.269 0.741 1.530 sum -12.603 13.354 -14.764 23.562 Atomic orbital electron populations 1.21480 0.89861 1.03178 1.02596 1.22897 0.97115 0.94080 0.95036 0.84447 1.23646 1.04819 1.00950 0.83940 1.20838 0.94285 1.04703 0.98683 1.21586 0.85921 0.80131 0.75601 1.90736 1.15962 1.74662 1.59696 1.84648 1.45767 1.37863 1.62727 1.22097 0.84400 0.82739 0.76064 1.90664 1.68129 1.22642 1.59686 1.86723 1.36628 1.40898 1.60881 1.21763 0.82355 0.94360 0.96025 1.19197 1.03475 1.00558 0.94693 1.20865 0.96461 0.94616 0.93869 1.20423 1.02465 0.98366 1.01217 1.19984 0.91981 0.88293 0.92245 1.83950 1.58881 1.32376 1.38051 1.21854 1.28500 1.01619 0.97078 0.87829 1.26603 0.99222 0.98445 0.97658 1.70180 1.45007 1.26274 1.14159 0.84584 0.77494 0.76196 0.77948 1.18798 1.19672 1.17530 1.21241 1.07496 1.02435 0.95198 1.20952 0.93940 0.91679 0.99337 0.91693 0.89626 0.92550 0.84742 0.84877 0.70923 0.89460 0.89761 0.83583 0.86411 0.91758 0.85819 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 8.43 71.98 0.61 -0.93 16 2 C -0.07 -1.04 5.92 -10.79 -0.06 -1.10 16 3 H 0.14 1.85 7.67 -2.39 -0.02 1.84 16 4 C -0.10 -1.16 9.58 30.60 0.29 -0.87 16 5 C -0.18 -3.46 2.59 -53.67 -0.14 -3.60 16 6 C 0.52 10.93 7.84 71.24 0.56 11.49 16 7 O -0.52 -11.92 13.87 21.98 0.30 -11.62 16 8 O -0.50 -10.08 11.97 -45.36 -0.54 -10.62 16 9 C 0.50 12.03 7.49 71.24 0.53 12.56 16 10 O -0.52 -13.85 16.01 21.94 0.35 -13.50 16 11 O -0.34 -8.86 8.75 -45.31 -0.40 -9.26 16 12 C 0.13 3.24 5.59 71.23 0.40 3.64 16 13 C -0.18 -5.56 5.52 -19.84 -0.11 -5.67 16 14 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 15 C -0.21 -8.51 9.99 22.39 0.22 -8.29 16 16 C 0.13 6.12 6.65 22.58 0.15 6.27 16 17 O -0.23 -13.36 9.76 -22.72 -0.22 -13.58 16 18 C -0.41 -23.61 9.49 67.92 0.64 -22.97 16 19 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 20 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 21 N -0.92 -55.53 13.67 21.61 0.30 -55.23 16 22 Si 1.02 41.90 29.55 68.60 2.03 43.92 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 26 C -0.24 -10.31 9.17 22.39 0.21 -10.10 16 27 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 28 H 0.06 0.93 7.02 -2.39 -0.02 0.91 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.96 7.26 -2.39 -0.02 0.95 16 31 H 0.13 1.20 8.05 -2.38 -0.02 1.18 16 32 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.43 5.15 9.10 -74.06 -0.67 4.47 16 34 H 0.09 1.99 8.08 -2.38 -0.02 1.97 16 35 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 36 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -74.86 352.89 6.44 -68.42 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.43 Total: 24.03 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.20 Total: -22.57 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.30 Total: -55.23 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -0.50 Total: -58.58 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -74.86 6.44 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605025904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.969 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds