Wall clock time and date at job start Tue Mar 31 2020 13:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 C 1.50693 * 109.47237 * 239.99651 * 2 1 3 5 5 O 1.20826 * 120.00605 * 240.00048 * 4 2 1 6 6 O 1.34230 * 120.00377 * 60.00588 * 4 2 1 7 7 C 1.50702 * 109.46685 * 119.99789 * 2 1 3 8 8 O 1.20762 * 119.99813 * 119.99750 * 7 2 1 9 9 C 1.50694 * 120.00346 * 300.00270 * 7 2 1 10 10 O 1.45200 * 109.47422 * 179.97438 * 9 7 2 11 11 C 1.34701 * 117.00169 * 179.97438 * 10 9 7 12 12 O 1.21471 * 120.00074 * 0.02562 * 11 10 9 13 13 C 1.47769 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.39960 * 120.03302 * 359.97438 * 13 11 10 15 15 C 1.38317 * 120.35753 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41703 * 359.97438 * 15 14 13 17 17 C 1.40757 * 120.05004 * 0.02562 * 16 15 14 18 18 C 1.41439 * 120.17704 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99698 * 24.41558 * 18 17 16 20 20 C 1.39932 * 120.00172 * 204.41934 * 18 17 16 21 21 N 1.30824 * 120.00201 * 17.84828 * 20 18 17 22 22 Si 1.86806 * 119.99927 * 197.84744 * 20 18 17 23 23 H 1.48496 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46953 * 120.00169 * 22 20 18 25 25 H 1.48506 * 109.46942 * 240.00042 * 22 20 18 26 26 C 1.39059 * 120.03051 * 180.02562 * 13 11 10 27 27 H 1.08993 * 109.47310 * 300.00145 * 1 2 3 28 28 H 1.09007 * 109.46370 * 60.00318 * 1 2 3 29 29 H 1.08998 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47035 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47015 * 299.99877 * 3 2 1 32 32 H 1.09004 * 109.46585 * 59.99649 * 3 2 1 33 33 H 0.96697 * 117.00959 * 179.97438 * 6 4 2 34 34 H 1.09004 * 109.47480 * 59.99632 * 9 7 2 35 35 H 1.09004 * 109.46959 * 299.99960 * 9 7 2 36 36 H 1.08008 * 119.82112 * 359.97438 * 14 13 11 37 37 H 1.08005 * 119.79035 * 180.02562 * 15 14 13 38 38 H 1.08001 * 119.97827 * 179.97438 * 16 15 14 39 39 H 0.96997 * 120.00007 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.20114 * 359.70048 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7083 -0.2519 -2.4496 7 6 2.0323 -0.7104 1.2305 8 8 2.7265 -1.6923 1.1198 9 6 1.6682 -0.1956 2.5992 10 8 2.2685 -1.0458 3.6117 11 6 2.0387 -0.7202 4.8984 12 8 1.3551 0.2473 5.1673 13 6 2.6173 -1.5405 5.9828 14 6 3.4037 -2.6562 5.6737 15 6 3.9481 -3.4291 6.6834 16 6 3.7234 -3.1097 8.0044 17 6 2.9352 -1.9914 8.3350 18 6 2.7023 -1.6614 9.6905 19 1 3.3996 -1.9799 10.4513 20 6 1.5684 -0.9223 10.0458 21 7 0.5597 -0.8331 9.2175 22 14 1.4951 -0.0630 11.7029 23 1 2.7541 -0.3168 12.4482 24 1 1.3290 1.3981 11.4958 25 1 0.3441 -0.5867 12.4815 26 6 2.3800 -1.2052 7.3113 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.0543 -0.7406 -3.2088 34 1 0.5842 -0.2042 2.7142 35 1 2.0376 0.8235 2.7142 36 1 3.5858 -2.9157 4.6412 37 1 4.5539 -4.2879 6.4345 38 1 4.1516 -3.7183 8.7872 39 1 -0.2264 -0.3211 9.4640 40 1 1.7772 -0.3429 7.5547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609649021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:47 Heat of formation + Delta-G solvation = -193.900458 kcal Electronic energy + Delta-G solvation = -26133.095115 eV Core-core repulsion = 22071.070910 eV Total energy + Delta-G solvation = -4062.024205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31918 -39.98015 -38.96375 -37.36612 -36.32118 -35.72885 -35.50068 -33.77305 -30.55780 -29.54443 -28.80931 -27.95740 -25.39500 -25.09021 -23.59947 -22.39344 -21.00937 -19.92258 -19.33424 -18.13275 -17.94625 -17.08059 -16.42568 -16.39269 -16.16963 -16.01532 -15.59438 -15.10607 -14.73832 -14.60954 -14.28666 -14.08788 -13.42630 -13.39605 -13.18968 -12.80997 -12.69469 -12.65778 -12.52408 -12.49723 -12.05378 -11.89669 -11.70492 -11.69412 -11.22726 -11.13057 -10.78456 -10.75801 -10.53957 -10.47136 -10.27824 -9.76788 -9.69640 -9.45777 -9.26838 -7.77556 -7.57497 -6.85334 -4.45629 1.66322 1.91005 1.92017 2.29423 2.75279 2.91785 3.05238 3.09501 3.11736 3.52367 3.73692 3.88448 4.21655 4.30648 4.47520 4.55002 4.88863 5.02017 5.06211 5.08411 5.19325 5.22092 5.25517 5.51892 5.54454 5.63764 5.66838 6.12360 6.16433 6.42669 6.55383 6.81350 6.91289 6.94644 7.14412 7.22625 7.28780 7.60094 7.66350 7.73602 7.88619 8.07695 8.41299 8.43832 8.74504 8.76818 10.10118 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.002669 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.607355 B =10487.989971 C =11352.967281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.482 3.518 5 O -0.474 6.474 6 O -0.515 6.515 7 C 0.353 3.647 8 O -0.378 6.378 9 C 0.022 3.978 10 O -0.337 6.337 11 C 0.514 3.486 12 O -0.516 6.516 13 C -0.116 4.116 14 C -0.191 4.191 15 C -0.104 4.104 16 C -0.199 4.199 17 C 0.094 3.906 18 C -0.459 4.459 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.787 5.787 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.088 4.088 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.284 0.716 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 5.900 -17.653 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.200 4.200 4 C 0.321 3.679 5 O -0.358 6.358 6 O -0.328 6.328 7 C 0.221 3.779 8 O -0.244 6.244 9 C -0.053 4.053 10 O -0.255 6.255 11 C 0.361 3.639 12 O -0.406 6.406 13 C -0.117 4.117 14 C -0.210 4.210 15 C -0.122 4.122 16 C -0.219 4.219 17 C 0.092 3.908 18 C -0.488 4.488 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.412 5.412 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.107 4.107 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.271 0.729 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.018 5.656 -17.301 18.314 hybrid contribution -0.122 0.214 0.084 0.260 sum -2.140 5.870 -17.217 18.316 Atomic orbital electron populations 1.21922 0.88980 1.04069 1.05056 1.20933 1.00179 0.98438 0.90038 1.21920 1.02282 0.90748 1.05051 1.22758 0.77969 0.82741 0.84437 1.90886 1.33703 1.24661 1.86590 1.84468 1.72550 1.59192 1.16549 1.23964 0.79559 0.84789 0.89621 1.90598 1.25411 1.20621 1.87794 1.23102 1.00542 0.95770 0.85882 1.86707 1.69345 1.53488 1.15921 1.22001 0.77398 0.83103 0.81356 1.90763 1.37642 1.28374 1.83828 1.18788 1.04370 0.98096 0.90492 1.20641 1.04082 0.98199 0.98104 1.20529 0.99879 0.98613 0.93179 1.21208 1.06937 0.98898 0.94823 1.17544 0.90340 0.89603 0.93359 1.19594 1.06433 1.29776 0.93027 0.89889 1.25963 0.94587 0.94646 0.99369 1.69786 1.03924 1.30986 1.36518 0.86223 0.79345 0.79564 0.81418 1.18304 1.19572 1.19900 1.21645 1.00135 1.00130 0.88809 0.89685 0.89614 0.91255 0.91276 0.89609 0.89706 0.72918 0.87775 0.87816 0.87611 0.88429 0.88272 0.90494 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.19 37.16 0.30 -0.65 16 2 C -0.09 -0.87 0.81 -156.81 -0.13 -0.99 16 3 C -0.14 -0.94 8.19 37.16 0.30 -0.63 16 4 C 0.48 5.16 6.92 36.00 0.25 5.41 16 5 O -0.47 -7.27 14.95 -26.86 -0.40 -7.67 16 6 O -0.51 -3.56 13.23 -39.26 -0.52 -4.07 16 7 C 0.35 4.72 6.04 -29.04 -0.18 4.54 16 8 O -0.38 -6.84 14.33 -25.28 -0.36 -7.20 16 9 C 0.02 0.31 5.23 36.00 0.19 0.49 16 10 O -0.34 -6.50 8.99 -47.19 -0.42 -6.92 16 11 C 0.51 11.37 7.90 34.63 0.27 11.64 16 12 O -0.52 -11.92 16.12 -19.24 -0.31 -12.23 16 13 C -0.12 -2.81 5.87 -105.05 -0.62 -3.43 16 14 C -0.19 -4.34 9.62 -38.91 -0.37 -4.71 16 15 C -0.10 -2.29 10.01 -39.73 -0.40 -2.69 16 16 C -0.20 -4.72 9.78 -38.81 -0.38 -5.10 16 17 C 0.09 2.46 5.57 -106.87 -0.60 1.86 16 18 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 19 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 20 C 0.07 1.80 5.14 -17.35 -0.09 1.72 16 21 N -0.79 -20.32 10.95 55.55 0.61 -19.71 16 22 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 26 C -0.09 -2.30 8.23 -38.42 -0.32 -2.62 16 27 H 0.08 0.46 7.28 -51.93 -0.38 0.08 16 28 H 0.08 0.43 8.11 -51.92 -0.42 0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.08 0.44 7.28 -51.93 -0.38 0.06 16 33 H 0.41 1.27 9.10 45.56 0.41 1.68 16 34 H 0.10 1.24 7.37 -51.93 -0.38 0.85 16 35 H 0.10 1.21 7.37 -51.93 -0.38 0.82 16 36 H 0.11 2.26 7.59 -52.48 -0.40 1.87 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 40 H 0.14 3.77 5.74 -52.49 -0.30 3.47 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -34.05 352.62 -7.11 -41.16 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.89 Total: 5.37 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.09 Total: -7.35 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -2.02 Total: -38.10 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.05 -7.11 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609649021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.738 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds