Wall clock time and date at job start Tue Mar 31 2020 13:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46858 * 2 1 4 4 H 1.08996 * 109.47017 * 305.00095 * 3 2 1 5 5 C 1.52997 * 109.46723 * 184.99762 * 3 2 1 6 6 N 1.46504 * 109.46847 * 184.99911 * 5 3 2 7 7 C 1.34776 * 120.00034 * 180.02562 * 6 5 3 8 8 O 1.21631 * 119.99793 * 0.02562 * 7 6 5 9 9 C 1.47297 * 120.00090 * 180.02562 * 7 6 5 10 10 C 1.38368 * 120.57442 * 359.97438 * 9 7 6 11 11 C 1.38871 * 121.15376 * 179.75078 * 10 9 7 12 12 C 1.35569 * 122.43560 * 0.56984 * 11 10 9 13 13 C 1.41636 * 120.90091 * 359.42785 * 12 11 10 14 14 N 1.32400 * 131.03446 * 180.27464 * 13 12 11 15 15 S 1.55553 * 109.37275 * 180.02562 * 14 13 12 16 16 N 1.55558 * 100.17773 * 0.02562 * 15 14 13 17 17 C 1.31855 * 109.44356 * 359.97438 * 16 15 14 18 18 N 1.46503 * 109.46917 * 65.00464 * 3 2 1 19 19 C 1.36945 * 119.99693 * 274.99565 * 18 3 2 20 20 H 1.07999 * 120.00010 * 0.02562 * 19 18 3 21 21 C 1.38811 * 119.99821 * 180.02562 * 19 18 3 22 22 N 1.31620 * 120.00126 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47041 * 59.99832 * 23 21 19 25 25 H 1.48500 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46754 * 299.99999 * 23 21 19 27 27 H 1.09002 * 109.47402 * 299.99380 * 1 2 3 28 28 H 1.08997 * 109.47708 * 59.99698 * 1 2 3 29 29 H 1.09008 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46923 * 239.99941 * 2 1 3 31 31 H 1.09003 * 109.47123 * 119.99923 * 2 1 3 32 32 H 1.09005 * 109.47156 * 65.00406 * 5 3 2 33 33 H 1.09000 * 109.47714 * 304.99946 * 5 3 2 34 34 H 0.97001 * 120.00248 * 0.02562 * 6 5 3 35 35 H 1.07996 * 119.42147 * 0.04592 * 10 9 7 36 36 H 1.07998 * 118.78053 * 180.27840 * 11 10 9 37 37 H 1.08002 * 119.55247 * 179.71304 * 12 11 10 38 38 H 0.96993 * 120.00627 * 95.00060 * 18 3 2 39 39 H 0.96994 * 119.99489 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5647 1.4443 -0.1257 6 7 4.0629 2.8168 -0.0059 7 6 5.3855 3.0631 -0.0867 8 8 6.1654 2.1459 -0.2596 9 6 5.8865 4.4430 0.0342 10 6 5.0098 5.4954 0.2305 11 6 5.4693 6.8003 0.3513 12 6 6.7850 7.1180 0.2738 13 6 7.7650 6.1149 0.0748 14 7 9.0828 6.1948 -0.0251 15 16 9.6711 4.7712 -0.2416 16 7 8.3633 3.9291 -0.2330 17 6 7.3288 4.7266 -0.0529 18 7 1.6524 2.0974 1.2519 19 6 0.4155 2.6734 1.3689 20 1 -0.2744 2.6445 0.5385 21 6 0.0485 3.2944 2.5549 22 7 0.8895 3.3301 3.5668 23 14 -1.6390 4.0795 2.7148 24 1 -2.6866 3.0469 2.5113 25 1 -1.7837 4.6705 4.0694 26 1 -1.7883 5.1447 1.6908 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8498 1.0377 -1.0960 33 1 3.9954 0.8311 0.6660 34 1 3.4409 3.5484 0.1316 35 1 3.9500 5.2979 0.2956 36 1 4.7516 7.5919 0.5082 37 1 7.0904 8.1494 0.3696 38 1 2.2718 2.1231 1.9978 39 1 0.6328 3.7637 4.3955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753492392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:20 Heat of formation + Delta-G solvation = 30.892508 kcal Electronic energy + Delta-G solvation = -24001.721828 eV Core-core repulsion = 20456.783751 eV Total energy + Delta-G solvation = -3544.938077 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95721 -40.47187 -38.22015 -37.35407 -35.20255 -34.82235 -34.10708 -31.77594 -31.35252 -29.22334 -28.58886 -25.76907 -24.68223 -23.65299 -23.18225 -21.64571 -21.15276 -20.45091 -19.22407 -18.72790 -18.01295 -17.33883 -17.01323 -16.84522 -16.37413 -16.05612 -15.80655 -15.58598 -15.25113 -14.77442 -14.51270 -14.15849 -13.80833 -13.72019 -13.12311 -12.95447 -12.87360 -12.83460 -12.75309 -12.69691 -12.55283 -12.33494 -12.10025 -12.05258 -11.86687 -11.83354 -11.60292 -11.29198 -10.95099 -10.78622 -10.08048 -9.80457 -9.45546 -8.92979 -7.81467 -5.09150 -1.33497 0.26899 0.36803 0.37617 0.72565 1.55904 1.57818 1.62610 1.83273 2.13936 2.61386 2.65180 3.05339 3.51959 3.64199 3.76362 3.90698 3.93804 3.95108 4.00386 4.22469 4.40326 4.50766 4.58288 4.62380 4.78962 4.81685 4.90443 5.12024 5.15143 5.15581 5.22078 5.23784 5.27911 5.48250 5.59409 5.67144 5.74855 5.76943 6.37737 6.58742 7.23366 7.46225 8.16711 8.42829 9.40952 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.003423 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.031614 B = 8178.510096 C = 9545.937768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.124 3.876 6 N -0.702 5.702 7 C 0.549 3.451 8 O -0.569 6.569 9 C -0.118 4.118 10 C -0.023 4.023 11 C -0.096 4.096 12 C -0.034 4.034 13 C 0.058 3.942 14 N -0.604 5.604 15 S 0.846 5.154 16 N -0.611 5.611 17 C 0.089 3.911 18 N -0.727 5.727 19 C -0.218 4.218 20 H 0.081 0.919 21 C -0.067 4.067 22 N -0.966 5.966 23 Si 0.957 3.043 24 H -0.287 1.287 25 H -0.305 1.305 26 H -0.275 1.275 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.412 0.588 35 H 0.158 0.842 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.372 0.628 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 7.512 -9.856 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.001 4.001 6 N -0.354 5.354 7 C 0.337 3.663 8 O -0.450 6.450 9 C -0.128 4.128 10 C -0.048 4.048 11 C -0.120 4.120 12 C -0.058 4.058 13 C -0.102 4.102 14 N -0.456 5.456 15 S 0.894 5.106 16 N -0.461 5.461 17 C -0.072 4.072 18 N -0.368 5.368 19 C -0.350 4.350 20 H 0.099 0.901 21 C -0.260 4.260 22 N -0.617 5.617 23 Si 0.788 3.212 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.200 1.200 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.250 0.750 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.204 0.796 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.427 6.216 -10.305 18.788 hybrid contribution -2.586 0.723 1.127 2.912 sum 11.842 6.940 -9.179 16.512 Atomic orbital electron populations 1.21694 0.95796 1.00548 1.01915 1.21998 0.96748 0.97474 1.00916 1.20693 0.90421 0.93300 0.89779 0.91839 1.21584 0.94657 0.82497 1.01322 1.45811 1.06442 1.10912 1.72255 1.18230 0.82519 0.88578 0.76949 1.90778 1.56694 1.46746 1.50772 1.20228 0.88577 0.93761 1.10274 1.21801 1.00295 0.92172 0.90496 1.21025 0.96027 0.96600 0.98331 1.20785 0.90015 0.98493 0.96497 1.21548 0.88979 0.94412 1.05217 1.72162 1.14003 1.32910 1.26517 1.78223 1.12794 0.80704 1.38919 1.71986 1.07618 1.40111 1.26421 1.22224 0.93499 0.89217 1.02260 1.42579 1.15869 1.66105 1.12241 1.19461 0.92453 1.25439 0.97605 0.90117 1.25321 1.00698 1.03406 0.96564 1.69803 1.36771 1.50883 1.04289 0.85452 0.81121 0.78546 0.76045 1.21397 1.23241 1.20049 0.93177 0.92992 0.93044 0.90836 0.93797 0.90376 0.93372 0.74957 0.82447 0.79667 0.80866 0.79583 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.18 71.98 0.66 -4.02 16 2 C -0.13 -4.21 5.61 30.59 0.17 -4.04 16 3 C 0.17 5.78 2.59 44.99 0.12 5.90 16 4 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 5 C 0.12 4.15 5.23 86.38 0.45 4.60 16 6 N -0.70 -23.34 5.34 -466.48 -2.49 -25.83 16 7 C 0.55 20.02 7.77 86.63 0.67 20.69 16 8 O -0.57 -24.91 16.09 -4.13 -0.07 -24.98 16 9 C -0.12 -3.65 6.07 -18.49 -0.11 -3.76 16 10 C -0.02 -0.52 9.49 22.45 0.21 -0.30 16 11 C -0.10 -1.56 9.82 21.80 0.21 -1.34 16 12 C -0.03 -0.60 10.03 22.49 0.23 -0.37 16 13 C 0.06 1.45 7.17 41.93 0.30 1.75 16 14 N -0.60 -14.48 11.45 -72.90 -0.83 -15.32 16 15 S 0.85 18.27 23.60 -56.49 -1.33 16.94 16 16 N -0.61 -19.63 10.68 -69.90 -0.75 -20.38 16 17 C 0.09 2.78 7.05 43.55 0.31 3.09 16 18 N -0.73 -31.72 4.51 -322.94 -1.46 -33.17 16 19 C -0.22 -10.45 7.75 84.03 0.65 -9.80 16 20 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 21 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 22 N -0.97 -54.60 13.06 21.65 0.28 -54.32 16 23 Si 0.96 42.54 29.55 68.60 2.03 44.56 16 24 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.31 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.41 12.93 6.17 -92.71 -0.57 12.35 16 35 H 0.16 3.25 6.36 -2.91 -0.02 3.23 16 36 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.37 18.30 7.80 -92.71 -0.72 17.57 16 39 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -70.70 343.85 -0.46 -71.16 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.18 Total: 31.96 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 4.34 Total: 9.36 kcal Atomic # 7 Polarization: -143.77 SS G_CDS: -5.24 Total: -149.01 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.07 Total: -24.98 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 18.27 SS G_CDS: -1.33 Total: 16.94 kcal Total: -70.70 -0.46 -71.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753492392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.050 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds