Wall clock time and date at job start Tue Mar 31 2020 14:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47242 * 2 1 4 4 C 1.53004 * 109.46662 * 240.00017 * 2 1 3 5 5 N 1.46501 * 109.47262 * 65.00568 * 4 2 1 6 6 C 1.36936 * 120.00471 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99613 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00268 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99783 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00025 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47195 * 59.99827 * 10 8 6 12 12 H 1.48502 * 109.47207 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46866 * 299.99872 * 10 8 6 14 14 C 1.52997 * 109.47053 * 120.00625 * 2 1 3 15 15 N 1.46504 * 109.46821 * 294.99571 * 14 2 1 16 16 C 1.34776 * 120.00003 * 180.02562 * 15 14 2 17 17 O 1.21631 * 119.99848 * 359.97438 * 16 15 14 18 18 C 1.47296 * 120.00059 * 180.02562 * 16 15 14 19 19 C 1.38368 * 120.57458 * 0.02562 * 18 16 15 20 20 C 1.38871 * 121.15312 * 179.67133 * 19 18 16 21 21 C 1.35569 * 122.43565 * 0.63012 * 20 19 18 22 22 C 1.41636 * 120.90091 * 359.38874 * 21 20 19 23 23 N 1.32400 * 131.03446 * 180.27464 * 22 21 20 24 24 S 1.55553 * 109.37275 * 180.02562 * 23 22 21 25 25 N 1.55551 * 100.17527 * 0.02562 * 24 23 22 26 26 C 1.31851 * 109.45003 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46867 * 299.99786 * 1 2 3 29 29 H 1.09001 * 109.47215 * 59.99537 * 1 2 3 30 30 H 1.09004 * 109.46955 * 184.99993 * 4 2 1 31 31 H 1.08997 * 109.47713 * 305.00241 * 4 2 1 32 32 H 0.97003 * 119.99650 * 359.97438 * 5 4 2 33 33 H 0.97005 * 119.99662 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.46812 * 175.00097 * 14 2 1 35 35 H 1.09000 * 109.47656 * 54.99488 * 14 2 1 36 36 H 0.97001 * 120.00228 * 0.02562 * 15 14 2 37 37 H 1.07997 * 119.42162 * 0.02562 * 19 18 16 38 38 H 1.07998 * 118.78030 * 180.29957 * 20 19 18 39 39 H 1.08002 * 119.55247 * 179.67393 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0018 -0.4202 -3.6856 7 1 2.5634 -1.3371 -3.7865 8 6 1.6342 0.2966 -4.8161 9 7 0.9493 1.4138 -4.6931 10 14 2.1102 -0.3253 -6.5120 11 1 1.5176 -1.6692 -6.7308 12 1 1.6017 0.6134 -7.5442 13 1 3.5893 -0.4147 -6.6092 14 6 2.0400 -0.7214 1.2491 15 7 1.6524 0.0352 2.4423 16 6 1.9964 -0.4133 3.6659 17 8 2.6282 -1.4464 3.7794 18 6 1.6063 0.3471 4.8655 19 6 0.8862 1.5230 4.7502 20 6 0.5063 2.2459 5.8734 21 6 0.8247 1.8548 7.1318 22 6 1.5598 0.6658 7.3599 23 7 1.9700 0.0997 8.4843 24 16 2.7445 -1.2076 8.1511 25 7 2.6471 -1.1966 6.5987 26 6 1.9763 -0.1307 6.2084 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.1262 -0.7995 -1.2057 31 1 1.6053 -1.7198 -1.2953 32 1 1.1483 0.8592 -2.3518 33 1 0.6921 1.9145 -5.4832 34 1 3.1263 -0.7996 1.2054 35 1 1.6053 -1.7199 1.2951 36 1 1.1483 0.8590 2.3518 37 1 0.6099 1.8819 3.7698 38 1 -0.0592 3.1561 5.7392 39 1 0.5097 2.4556 7.9722 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753635810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:40 Heat of formation + Delta-G solvation = 26.337049 kcal Electronic energy + Delta-G solvation = -23124.957065 eV Core-core repulsion = 19579.821448 eV Total energy + Delta-G solvation = -3545.135616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97031 -40.55355 -38.19754 -37.35654 -35.94348 -34.83241 -34.11890 -32.15637 -31.16915 -28.60493 -27.76336 -27.09518 -24.82135 -23.77736 -23.34212 -21.64639 -21.16206 -20.47100 -19.24126 -18.73425 -18.00509 -17.41011 -16.97610 -16.82491 -16.45644 -16.23675 -15.82754 -15.54517 -15.39079 -15.20225 -14.63222 -14.14989 -13.74902 -13.64931 -13.52996 -13.12466 -12.94576 -12.86133 -12.82270 -12.76791 -12.58657 -12.20469 -12.15873 -12.04788 -11.97006 -11.86318 -11.67996 -11.63306 -10.94089 -10.91605 -10.17072 -9.82154 -9.46991 -8.97543 -7.94077 -5.21911 -1.31959 0.27031 0.38612 0.39006 0.71125 1.48678 1.51136 1.57207 1.82195 2.01569 2.57742 2.60942 3.03969 3.39379 3.61477 3.70162 3.80323 3.92670 3.97110 3.99043 4.08777 4.24104 4.36784 4.57130 4.64492 4.72081 4.79362 4.83714 4.96828 5.08518 5.14876 5.15190 5.22981 5.30634 5.32836 5.41753 5.50736 5.52523 5.77874 6.28881 6.52798 7.20813 7.35916 8.10968 8.36090 9.29012 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.033680 B = 0.002101 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.143891 B =13325.540715 C =14003.473297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.084 0.916 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.248 4.248 7 H 0.071 0.929 8 C -0.073 4.073 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.140 3.860 15 N -0.705 5.705 16 C 0.551 3.449 17 O -0.568 6.568 18 C -0.121 4.121 19 C -0.016 4.016 20 C -0.093 4.093 21 C -0.038 4.038 22 C 0.058 3.942 23 N -0.607 5.607 24 S 0.834 5.166 25 N -0.613 5.613 26 C 0.087 3.913 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.378 0.622 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.178 0.822 38 H 0.194 0.806 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 3.814 29.624 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.103 0.897 4 C 0.029 3.971 5 N -0.383 5.383 6 C -0.380 4.380 7 H 0.089 0.911 8 C -0.265 4.265 9 N -0.616 5.616 10 Si 0.801 3.199 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.016 3.984 15 N -0.359 5.359 16 C 0.339 3.661 17 O -0.448 6.448 18 C -0.131 4.131 19 C -0.041 4.041 20 C -0.117 4.117 21 C -0.062 4.062 22 C -0.102 4.102 23 N -0.458 5.458 24 S 0.882 5.118 25 N -0.463 5.463 26 C -0.074 4.074 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.211 0.789 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.195 0.805 38 H 0.211 0.789 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.274 1.387 30.995 31.053 hybrid contribution -0.600 1.032 -2.298 2.590 sum -1.873 2.419 28.697 28.860 Atomic orbital electron populations 1.21748 0.93595 1.01936 1.02102 1.21330 0.97373 1.00204 0.92281 0.89735 1.20722 0.96458 0.94142 0.85816 1.42475 1.66790 1.27854 1.01218 1.19573 1.27933 1.05330 0.85145 0.91076 1.25515 1.01698 0.97927 1.01387 1.69787 1.44885 1.17795 1.29179 0.85243 0.77841 0.77170 0.79691 1.20587 1.21934 1.20594 1.21134 0.99485 0.95022 0.82786 1.45709 1.57495 1.28208 1.04454 1.18262 0.79361 0.84722 0.83724 1.90833 1.41144 1.25765 1.87050 1.20214 1.06506 0.98757 0.87648 1.21915 0.90068 0.89629 1.02476 1.21110 0.99307 1.01618 0.89655 1.20847 0.94234 0.90965 1.00158 1.21666 1.03288 1.00236 0.85027 1.72203 1.22650 1.17830 1.33126 1.78381 1.30608 1.11224 0.91620 1.72037 1.25745 1.27420 1.21073 1.22369 0.98030 0.90422 0.96618 0.93267 0.89985 0.93649 0.96443 0.96291 0.78915 0.93920 0.92336 0.92007 0.74569 0.80495 0.78935 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.94 71.98 0.64 -2.98 16 2 C -0.09 -2.67 2.46 -10.79 -0.03 -2.69 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.11 5.65 86.38 0.49 6.60 16 5 N -0.74 -36.81 5.33 -343.44 -1.83 -38.64 16 6 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 7 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 9 N -0.97 -57.99 13.06 21.65 0.28 -57.71 16 10 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 C 0.14 3.75 5.06 86.38 0.44 4.19 16 15 N -0.70 -15.25 5.23 -466.48 -2.44 -17.69 16 16 C 0.55 15.06 7.77 86.63 0.67 15.74 16 17 O -0.57 -21.36 16.09 -4.13 -0.07 -21.43 16 18 C -0.12 -2.57 6.07 -18.49 -0.11 -2.68 16 19 C -0.02 -0.16 9.49 22.45 0.21 0.05 16 20 C -0.09 -0.53 9.82 21.80 0.21 -0.32 16 21 C -0.04 -0.39 10.03 22.49 0.23 -0.16 16 22 C 0.06 1.10 7.17 41.93 0.30 1.40 16 23 N -0.61 -11.88 11.45 -72.90 -0.83 -12.72 16 24 S 0.83 14.98 23.60 -56.49 -1.33 13.65 16 25 N -0.61 -16.76 10.68 -69.90 -0.75 -17.51 16 26 C 0.09 2.15 7.06 43.55 0.31 2.46 16 27 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.08 1.51 7.18 -2.39 -0.02 1.49 16 29 H 0.04 1.46 7.18 -2.39 -0.02 1.44 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.38 19.49 6.85 -92.71 -0.63 18.85 16 33 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 5.76 5.69 -92.71 -0.53 5.24 16 37 H 0.18 0.53 6.36 -2.91 -0.02 0.51 16 38 H 0.19 -0.60 8.06 -2.91 -0.02 -0.62 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -82.19 345.68 -0.32 -82.52 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.05 Total: 16.59 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.67 Total: 4.90 kcal Atomic # 7 Polarization: -138.69 SS G_CDS: -5.57 Total: -144.26 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 14.98 SS G_CDS: -1.33 Total: 13.65 kcal Total: -82.19 -0.32 -82.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.853 kcal (2) G-P(sol) polarization free energy of solvation -82.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds