Wall clock time and date at job start Tue Mar 31 2020 14:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47055 * 2 1 4 4 C 1.53000 * 109.46907 * 240.00246 * 2 1 3 5 5 N 1.46497 * 109.47167 * 184.99695 * 4 2 1 6 6 C 1.46502 * 120.00244 * 270.00407 * 5 4 2 7 7 C 1.36940 * 119.99990 * 90.00203 * 5 4 2 8 8 H 1.08002 * 119.99949 * 22.30494 * 7 5 4 9 9 C 1.38809 * 119.99840 * 202.31260 * 7 5 4 10 10 N 1.31615 * 120.00433 * 11.48577 * 9 7 5 11 11 Si 1.86801 * 119.99821 * 191.48408 * 9 7 5 12 12 H 1.48506 * 109.46981 * 60.00117 * 11 9 7 13 13 H 1.48505 * 109.47131 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47333 * 300.00203 * 11 9 7 15 15 N 1.46498 * 109.47376 * 120.00481 * 2 1 3 16 16 C 1.34779 * 119.99814 * 275.00109 * 15 2 1 17 17 O 1.21538 * 119.99883 * 359.97438 * 16 15 2 18 18 C 1.47860 * 120.00070 * 179.97438 * 16 15 2 19 19 N 1.29005 * 124.84773 * 359.95846 * 18 16 15 20 20 C 1.33156 * 118.20518 * 180.02562 * 19 18 16 21 21 C 1.41367 * 129.83242 * 180.02562 * 20 19 18 22 22 N 1.31016 * 120.67054 * 180.02562 * 21 20 19 23 23 C 1.32364 * 122.68188 * 359.97438 * 22 21 20 24 24 C 1.36531 * 121.01220 * 359.97438 * 23 22 21 25 25 C 1.39648 * 119.14589 * 0.02562 * 24 23 22 26 26 S 1.75905 * 132.43677 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47215 * 299.99512 * 1 2 3 28 28 H 1.09001 * 109.47333 * 59.99596 * 1 2 3 29 29 H 1.09003 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47449 * 304.99981 * 4 2 1 31 31 H 1.09003 * 109.46904 * 64.99938 * 4 2 1 32 32 H 1.09004 * 109.47488 * 94.21088 * 6 5 4 33 33 H 1.08998 * 109.47063 * 214.21339 * 6 5 4 34 34 H 1.08999 * 109.47135 * 334.21065 * 6 5 4 35 35 H 0.97001 * 120.00272 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00107 * 94.99729 * 15 2 1 37 37 H 1.08000 * 119.66173 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.49538 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.42887 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7613 7 6 4.0849 -1.9158 -0.6025 8 1 3.5336 -2.8398 -0.5084 9 6 5.3864 -1.8327 -0.1271 10 7 5.9790 -0.6613 -0.0327 11 14 6.2969 -3.3834 0.3786 12 1 6.3980 -4.3000 -0.7855 13 1 7.6603 -3.0265 0.8469 14 1 5.5565 -4.0566 1.4758 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8584 1.1610 2.4116 18 6 2.6395 -0.7156 3.5645 19 7 2.9710 -1.9614 3.6126 20 6 3.3985 -2.4545 4.7733 21 6 3.8193 -3.7637 5.1010 22 7 4.2090 -4.0556 6.3173 23 6 4.2330 -3.1625 7.2939 24 6 3.8463 -1.8713 7.0759 25 6 3.4197 -1.4951 5.8005 26 16 2.8568 0.0351 5.1405 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6053 -1.7197 -1.2953 31 1 1.7515 -0.1582 -2.1370 32 1 4.6020 0.9458 -0.9803 33 1 5.2403 -0.2026 -2.1811 34 1 3.7810 0.7484 -2.5472 35 1 6.8884 -0.6032 0.2999 36 1 2.2491 -1.6318 1.1525 37 1 3.8187 -4.5311 4.3411 38 1 4.5635 -3.4595 8.2781 39 1 3.8693 -1.1503 7.8798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754316371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:31 Heat of formation + Delta-G solvation = 63.129484 kcal Electronic energy + Delta-G solvation = -24773.174557 eV Core-core repulsion = 21229.634380 eV Total energy + Delta-G solvation = -3543.540177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89269 -39.38264 -37.57420 -36.37088 -34.07047 -32.28341 -31.58357 -30.67625 -29.73359 -26.25409 -26.02839 -25.62112 -24.34262 -22.69824 -21.80267 -20.51578 -19.75996 -18.72596 -17.65814 -17.06958 -16.67598 -15.94640 -15.57630 -15.36836 -14.90972 -14.71705 -14.35849 -14.29842 -13.75439 -13.69450 -13.20420 -12.90226 -12.79516 -12.64212 -12.24260 -11.95431 -11.65397 -11.44678 -11.32173 -10.83599 -10.72667 -10.68663 -10.47416 -10.36294 -10.20670 -10.06649 -9.84178 -9.75145 -9.58543 -9.10340 -8.57260 -8.48462 -8.40826 -6.80636 -5.75405 -3.21274 -0.05289 0.83925 0.98848 1.53352 1.94354 3.28468 3.37373 3.42387 3.43240 3.43998 3.72256 3.99267 4.23792 4.37788 4.47406 4.73873 4.91326 5.18045 5.31076 5.47745 5.47845 5.56743 5.59763 5.75055 5.84642 5.92377 6.11201 6.18364 6.23857 6.38865 6.43990 6.71194 6.81427 7.03230 7.31947 7.36918 7.70219 7.74294 7.78265 8.05056 8.34929 8.60466 9.19294 9.82806 10.31603 11.28702 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.005674 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.836762 B = 4933.657557 C = 6498.783613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 H 0.082 0.918 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.257 4.257 8 H 0.067 0.933 9 C 0.012 3.988 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.284 1.284 13 H -0.293 1.293 14 H -0.278 1.278 15 N -0.651 5.651 16 C 0.591 3.409 17 O -0.541 6.541 18 C 0.087 3.913 19 N -0.410 5.410 20 C 0.032 3.968 21 C 0.194 3.806 22 N -0.478 5.478 23 C 0.098 3.902 24 C -0.123 4.123 25 C -0.159 4.159 26 S 0.160 5.840 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.045 0.955 34 H -0.004 1.004 35 H 0.252 0.748 36 H 0.416 0.584 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -1.559 10.326 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 H 0.100 0.900 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.188 4.188 10 N -0.544 5.544 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.219 1.219 14 H -0.204 1.204 15 N -0.300 5.300 16 C 0.371 3.629 17 O -0.419 6.419 18 C -0.199 4.199 19 N -0.127 5.127 20 C -0.095 4.095 21 C 0.023 3.977 22 N -0.188 5.188 23 C -0.052 4.052 24 C -0.148 4.148 25 C -0.285 4.285 26 S 0.416 5.584 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.062 0.938 36 H 0.254 0.746 37 H 0.191 0.809 38 H 0.183 0.817 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.784 -0.724 10.486 13.079 hybrid contribution 0.970 -1.112 0.401 1.529 sum -6.814 -1.836 10.887 12.974 Atomic orbital electron populations 1.22165 0.96318 1.01614 1.01852 1.22077 0.92189 0.98615 0.86397 0.90023 1.21216 0.86077 0.98069 0.93332 1.43918 0.98844 1.22684 1.66606 1.20805 0.93020 0.90430 0.93837 1.19025 0.97150 0.89446 1.33040 0.91505 1.24955 0.98632 0.96132 0.99039 1.70058 1.13402 1.21687 1.49236 0.86488 0.79223 0.83183 0.78689 1.21064 1.21867 1.20389 1.45586 1.61972 1.15077 1.07350 1.16780 0.78665 0.85648 0.81799 1.90783 1.52241 1.14368 1.84488 1.27661 1.01969 0.91704 0.98561 1.65845 1.10473 1.11763 1.24581 1.20167 1.04621 0.97272 0.87402 1.22875 0.89671 0.91869 0.93333 1.67501 1.14490 1.36540 1.00242 1.22386 0.95692 0.88686 0.98482 1.21040 1.00977 0.98386 0.94378 1.24568 1.05391 0.98639 0.99934 1.85059 1.62364 1.07221 1.03727 0.92816 0.91815 0.92730 0.93089 0.92560 0.95417 0.93650 0.98511 0.93788 0.74564 0.80864 0.81675 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 37.16 0.35 -1.95 16 2 C 0.12 2.08 2.88 -67.93 -0.20 1.89 16 3 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.64 5.36 -4.04 -0.02 2.62 16 5 N -0.60 -14.03 2.82 -181.12 -0.51 -14.55 16 6 C 0.16 3.93 9.01 59.85 0.54 4.47 16 7 C -0.26 -6.53 8.02 -15.06 -0.12 -6.65 16 8 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 10 N -0.90 -25.62 10.59 55.49 0.59 -25.04 16 11 Si 0.89 21.49 29.57 -169.99 -5.03 16.46 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 N -0.65 -12.74 4.48 -54.75 -0.25 -12.99 16 16 C 0.59 11.99 7.80 -12.32 -0.10 11.90 16 17 O -0.54 -11.79 16.57 5.33 0.09 -11.70 16 18 C 0.09 1.62 7.41 -14.80 -0.11 1.51 16 19 N -0.41 -7.63 10.08 -8.53 -0.09 -7.71 16 20 C 0.03 0.53 6.99 -85.22 -0.60 -0.06 16 21 C 0.19 2.86 11.30 -16.71 -0.19 2.67 16 22 N -0.48 -6.49 10.28 -12.92 -0.13 -6.63 16 23 C 0.10 1.07 11.12 -17.94 -0.20 0.87 16 24 C -0.12 -1.39 10.09 -39.67 -0.40 -1.79 16 25 C -0.16 -2.33 6.62 -38.18 -0.25 -2.59 16 26 S 0.16 2.46 23.17 -107.50 -2.49 -0.03 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 31 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 32 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 33 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 34 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.42 8.36 7.03 -40.82 -0.29 8.08 16 37 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -30.97 347.79 -8.71 -39.67 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.75 Total: 4.17 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -1.38 Total: 13.10 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.39 Total: -66.91 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.49 Total: -0.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.97 -8.71 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754316371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.804 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds