Wall clock time and date at job start Tue Mar 31 2020 14:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47055 * 2 1 4 4 C 1.53000 * 109.46907 * 240.00246 * 2 1 3 5 5 N 1.46497 * 109.47167 * 184.99695 * 4 2 1 6 6 C 1.46502 * 120.00244 * 270.00407 * 5 4 2 7 7 C 1.36940 * 119.99990 * 90.00203 * 5 4 2 8 8 H 1.08002 * 119.99949 * 22.30494 * 7 5 4 9 9 C 1.38809 * 119.99840 * 202.31260 * 7 5 4 10 10 N 1.31615 * 120.00433 * 11.48577 * 9 7 5 11 11 Si 1.86801 * 119.99821 * 191.48408 * 9 7 5 12 12 H 1.48506 * 109.46981 * 60.00117 * 11 9 7 13 13 H 1.48505 * 109.47131 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47333 * 300.00203 * 11 9 7 15 15 N 1.46498 * 109.47376 * 120.00481 * 2 1 3 16 16 C 1.34779 * 119.99814 * 275.00109 * 15 2 1 17 17 O 1.21538 * 119.99883 * 359.97438 * 16 15 2 18 18 C 1.47860 * 120.00070 * 179.97438 * 16 15 2 19 19 N 1.29005 * 124.84773 * 359.95846 * 18 16 15 20 20 C 1.33156 * 118.20518 * 180.02562 * 19 18 16 21 21 C 1.41367 * 129.83242 * 180.02562 * 20 19 18 22 22 N 1.31016 * 120.67054 * 180.02562 * 21 20 19 23 23 C 1.32364 * 122.68188 * 359.97438 * 22 21 20 24 24 C 1.36531 * 121.01220 * 359.97438 * 23 22 21 25 25 C 1.39648 * 119.14589 * 0.02562 * 24 23 22 26 26 S 1.75905 * 132.43677 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47215 * 299.99512 * 1 2 3 28 28 H 1.09001 * 109.47333 * 59.99596 * 1 2 3 29 29 H 1.09003 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47449 * 304.99981 * 4 2 1 31 31 H 1.09003 * 109.46904 * 64.99938 * 4 2 1 32 32 H 1.09004 * 109.47488 * 94.21088 * 6 5 4 33 33 H 1.08998 * 109.47063 * 214.21339 * 6 5 4 34 34 H 1.08999 * 109.47135 * 334.21065 * 6 5 4 35 35 H 0.97001 * 120.00272 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00107 * 94.99729 * 15 2 1 37 37 H 1.08000 * 119.66173 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.49538 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.42887 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7613 7 6 4.0849 -1.9158 -0.6025 8 1 3.5336 -2.8398 -0.5084 9 6 5.3864 -1.8327 -0.1271 10 7 5.9790 -0.6613 -0.0327 11 14 6.2969 -3.3834 0.3786 12 1 6.3980 -4.3000 -0.7855 13 1 7.6603 -3.0265 0.8469 14 1 5.5565 -4.0566 1.4758 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8584 1.1610 2.4116 18 6 2.6395 -0.7156 3.5645 19 7 2.9710 -1.9614 3.6126 20 6 3.3985 -2.4545 4.7733 21 6 3.8193 -3.7637 5.1010 22 7 4.2090 -4.0556 6.3173 23 6 4.2330 -3.1625 7.2939 24 6 3.8463 -1.8713 7.0759 25 6 3.4197 -1.4951 5.8005 26 16 2.8568 0.0351 5.1405 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6053 -1.7197 -1.2953 31 1 1.7515 -0.1582 -2.1370 32 1 4.6020 0.9458 -0.9803 33 1 5.2403 -0.2026 -2.1811 34 1 3.7810 0.7484 -2.5472 35 1 6.8884 -0.6032 0.2999 36 1 2.2491 -1.6318 1.1525 37 1 3.8187 -4.5311 4.3411 38 1 4.5635 -3.4595 8.2781 39 1 3.8693 -1.1503 7.8798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754316371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:30 Heat of formation + Delta-G solvation = 42.015711 kcal Electronic energy + Delta-G solvation = -24774.090118 eV Core-core repulsion = 21229.634380 eV Total energy + Delta-G solvation = -3544.455739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.03127 -40.85892 -38.79097 -38.04859 -35.79982 -33.43003 -33.17077 -32.17686 -31.05917 -28.03347 -27.38374 -27.31480 -25.45969 -23.93285 -23.42888 -22.03316 -21.26742 -19.90165 -19.06564 -18.53809 -18.18952 -17.20880 -16.98343 -16.80890 -16.65645 -15.86385 -15.76449 -15.50788 -15.33753 -15.19893 -14.91419 -14.49796 -13.98328 -13.85604 -13.70593 -13.36118 -13.09260 -12.87119 -12.80802 -12.70321 -12.59326 -12.15548 -12.01811 -12.01305 -11.79041 -11.73081 -11.62574 -10.98990 -10.80130 -10.58878 -10.33698 -9.96487 -9.51734 -8.76358 -7.79092 -5.24789 -1.25766 -0.22623 -0.19739 0.32426 0.72513 1.45489 1.45846 1.50066 1.86398 2.11024 2.51751 2.58471 2.68933 3.21567 3.36474 3.38800 3.59867 3.74086 3.81005 4.13066 4.23844 4.41941 4.49991 4.51273 4.58652 4.69249 4.77084 4.84878 4.90912 5.00388 5.15832 5.28935 5.35753 5.39156 5.55529 5.66739 5.76192 6.06483 6.34193 6.50430 6.71309 7.06005 7.18396 7.90611 8.34629 9.23909 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.005674 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.836762 B = 4933.657557 C = 6498.783613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.116 3.884 3 H 0.053 0.947 4 C 0.140 3.860 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.242 4.242 8 H 0.077 0.923 9 C -0.041 4.041 10 N -0.934 5.934 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.308 1.308 14 H -0.269 1.269 15 N -0.654 5.654 16 C 0.586 3.414 17 O -0.567 6.567 18 C 0.045 3.955 19 N -0.423 5.423 20 C -0.004 4.004 21 C 0.187 3.813 22 N -0.487 5.487 23 C 0.112 3.888 24 C -0.116 4.116 25 C -0.162 4.162 26 S 0.185 5.815 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.083 0.917 32 H -0.008 1.008 33 H 0.018 0.982 34 H 0.031 0.969 35 H 0.240 0.760 36 H 0.413 0.587 37 H 0.179 0.821 38 H 0.213 0.787 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 -2.858 11.946 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 H 0.071 0.929 4 C 0.014 3.986 5 N -0.335 5.335 6 C 0.033 3.967 7 C -0.372 4.372 8 H 0.094 0.906 9 C -0.237 4.237 10 N -0.581 5.581 11 Si 0.772 3.228 12 H -0.204 1.204 13 H -0.236 1.236 14 H -0.194 1.194 15 N -0.302 5.302 16 C 0.367 3.633 17 O -0.447 6.447 18 C -0.239 4.239 19 N -0.140 5.140 20 C -0.130 4.130 21 C 0.016 3.984 22 N -0.196 5.196 23 C -0.039 4.039 24 C -0.141 4.141 25 C -0.288 4.288 26 S 0.441 5.559 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.011 0.989 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.250 0.750 37 H 0.196 0.804 38 H 0.230 0.770 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.892 -2.044 12.072 15.132 hybrid contribution 1.271 -0.773 0.033 1.488 sum -7.621 -2.817 12.105 14.579 Atomic orbital electron populations 1.22049 0.92966 1.02925 1.02666 1.22021 0.94705 0.96648 0.85695 0.92909 1.21437 0.83150 0.99577 0.94466 1.44140 1.00949 1.22009 1.66366 1.20509 0.92798 0.89886 0.93469 1.19314 0.96825 0.90278 1.30757 0.90577 1.25536 0.99836 0.97913 1.00381 1.70242 1.12937 1.23303 1.51593 0.85692 0.77482 0.80907 0.78684 1.20400 1.23557 1.19432 1.45677 1.61913 1.14840 1.07772 1.17040 0.78232 0.85489 0.82522 1.90742 1.53535 1.15319 1.85133 1.27336 1.04541 0.92477 0.99537 1.65766 1.10089 1.11971 1.26170 1.20390 1.06578 0.98499 0.87500 1.23022 0.89767 0.91391 0.94206 1.67598 1.14395 1.37411 1.00178 1.23220 0.93175 0.87989 0.99477 1.21567 0.99285 0.99460 0.93799 1.24875 1.05222 0.97744 1.00984 1.84786 1.62173 1.07373 1.01566 0.93792 0.89197 0.91113 0.91371 0.89896 0.98945 0.96319 0.95029 0.95101 0.74989 0.80410 0.77038 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 2 C 0.12 4.16 2.88 44.99 0.13 4.29 16 3 H 0.05 2.20 7.58 -2.39 -0.02 2.19 16 4 C 0.14 5.00 5.36 86.38 0.46 5.47 16 5 N -0.61 -28.56 2.82 -726.94 -2.05 -30.61 16 6 C 0.18 8.69 9.01 127.77 1.15 9.84 16 7 C -0.24 -12.26 8.02 84.03 0.67 -11.59 16 8 H 0.08 3.68 7.85 -2.91 -0.02 3.66 16 9 C -0.04 -2.26 5.13 84.86 0.44 -1.82 16 10 N -0.93 -55.22 10.59 21.65 0.23 -55.00 16 11 Si 0.94 44.82 29.57 68.60 2.03 46.85 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 N -0.65 -26.02 4.48 -445.42 -2.00 -28.02 16 16 C 0.59 24.59 7.80 86.79 0.68 25.27 16 17 O -0.57 -25.66 16.57 -3.84 -0.06 -25.72 16 18 C 0.05 1.74 7.41 87.66 0.65 2.39 16 19 N -0.42 -16.01 10.08 -180.89 -1.82 -17.83 16 20 C 0.00 -0.12 6.99 40.28 0.28 0.16 16 21 C 0.19 5.32 11.30 85.58 0.97 6.29 16 22 N -0.49 -11.92 10.28 -194.80 -2.00 -13.92 16 23 C 0.11 1.99 11.12 84.21 0.94 2.93 16 24 C -0.12 -2.21 10.09 22.21 0.22 -1.99 16 25 C -0.16 -4.52 6.62 23.18 0.15 -4.36 16 26 S 0.18 5.64 23.17 -56.49 -1.31 4.33 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 31 H 0.08 2.53 7.86 -2.39 -0.02 2.51 16 32 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 33 H 0.02 0.97 7.19 -2.39 -0.02 0.95 16 34 H 0.03 1.28 7.84 -2.39 -0.02 1.27 16 35 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.41 16.80 7.03 -92.71 -0.65 16.15 16 37 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.21 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -70.26 347.79 0.88 -69.38 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.44 Total: 16.95 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 7.42 Total: 33.59 kcal Atomic # 7 Polarization: -137.74 SS G_CDS: -7.64 Total: -145.39 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.31 Total: 4.33 kcal Total: -70.26 0.88 -69.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754316371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.397 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds