Wall clock time and date at job start Tue Mar 31 2020 12:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40309 * 126.64379 * 2 1 4 4 C 1.35173 * 107.12039 * 179.97438 * 3 2 1 5 5 O 1.33913 * 108.78229 * 359.76042 * 4 3 2 6 6 C 1.34929 * 109.38220 * 0.39830 * 5 4 3 7 7 C 1.46468 * 126.00010 * 179.86399 * 6 5 4 8 8 O 1.21623 * 120.00296 * 179.69268 * 7 6 5 9 9 O 1.34903 * 119.99458 * 359.96734 * 7 6 5 10 10 C 1.45201 * 116.99766 * 179.72270 * 9 7 6 11 11 C 1.50692 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00315 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99986 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47061 * 90.00107 * 14 13 11 16 16 H 1.07996 * 120.00322 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99884 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99960 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99940 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46935 * 59.99804 * 19 17 15 21 21 H 1.48506 * 109.46889 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47464 * 299.99750 * 19 17 15 23 23 C 1.46497 * 119.99703 * 359.97438 * 13 11 10 24 24 C 1.53001 * 109.47077 * 90.00084 * 23 13 11 25 25 C 1.47203 * 109.47208 * 179.97438 * 24 23 13 26 26 N 9.21269 * 73.70112 * 189.19358 * 2 1 3 27 27 H 1.09000 * 109.47146 * 270.02249 * 1 2 3 28 28 H 1.09006 * 109.47451 * 30.02652 * 1 2 3 29 29 H 1.09004 * 109.47126 * 150.02221 * 1 2 3 30 30 H 1.07996 * 126.44293 * 0.02562 * 3 2 1 31 31 H 1.07999 * 125.60528 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47123 * 300.00585 * 10 9 7 33 33 H 1.08997 * 109.46942 * 60.00326 * 10 9 7 34 34 H 1.08997 * 109.46530 * 210.00316 * 14 13 11 35 35 H 1.08997 * 109.46712 * 329.99342 * 14 13 11 36 36 H 0.96993 * 120.00054 * 180.02562 * 18 17 15 37 37 H 1.08995 * 109.47054 * 210.00140 * 23 13 11 38 38 H 1.09001 * 109.47048 * 330.00415 * 23 13 11 39 39 H 1.09003 * 109.47047 * 299.99729 * 24 23 13 40 40 H 1.08998 * 109.47471 * 59.99755 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6184 0.6740 0.0006 5 8 3.6011 -0.6650 0.0062 6 6 2.3226 -1.0963 0.0005 7 6 1.8857 -2.4942 0.0011 8 8 0.6989 -2.7605 0.0012 9 8 2.7996 -3.4865 0.0072 10 6 2.2945 -4.8478 0.0137 11 6 3.4518 -5.8129 0.0205 12 8 4.5902 -5.3948 0.0195 13 7 3.2218 -7.1410 0.0267 14 6 4.3470 -8.0792 0.0339 15 6 4.7296 -8.3938 1.4571 16 1 4.1891 -7.9399 2.2746 17 6 5.7705 -9.2602 1.7157 18 7 6.4291 -9.8126 0.7203 19 14 6.2453 -9.6496 3.4799 20 1 5.0874 -10.2605 4.1808 21 1 7.3858 -10.6007 3.4872 22 1 6.6399 -8.3977 4.1742 23 6 1.8467 -7.6462 0.0274 24 6 1.3699 -7.8291 -1.4149 25 6 -0.0116 -8.3374 -1.4142 26 7 -1.0785 -8.7289 -1.4128 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 2.0302 2.1590 0.0004 31 1 4.5045 1.2915 0.0011 32 1 1.6853 -5.0051 0.9038 33 1 1.6874 -5.0143 -0.8761 34 1 4.0571 -8.9979 -0.4760 35 1 5.1970 -7.6310 -0.4804 36 1 7.1610 -10.4224 0.9022 37 1 1.8119 -8.6043 0.5459 38 1 1.1981 -6.9336 0.5368 39 1 1.4047 -6.8710 -1.9333 40 1 2.0185 -8.5417 -1.9244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022988743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:12 Heat of formation + Delta-G solvation = -71.510077 kcal Electronic energy + Delta-G solvation = -25998.490848 eV Core-core repulsion = 21974.066639 eV Total energy + Delta-G solvation = -4024.424208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00440 -40.46169 -39.14579 -36.95393 -36.54894 -35.28914 -34.36916 -32.95328 -31.01631 -30.91935 -29.45478 -28.02368 -26.67847 -24.12703 -23.81736 -22.66155 -21.75376 -20.27958 -18.91614 -18.49221 -17.72924 -17.11008 -17.01914 -16.53401 -16.45431 -16.07409 -15.97514 -15.37779 -14.76017 -14.52852 -14.28999 -14.00854 -13.71751 -13.46193 -13.36565 -13.25587 -12.93158 -12.86389 -12.72292 -12.48440 -12.27660 -12.16023 -12.12415 -11.79303 -11.33129 -11.07979 -11.00301 -10.85804 -10.72784 -10.64168 -10.22991 -10.03129 -9.78184 -9.16178 -8.99998 -8.50141 -7.97477 -6.12273 -4.17328 0.60855 1.96941 2.05108 2.64768 2.68390 2.76401 2.79988 3.10263 3.29296 3.34037 3.37378 3.60406 4.10021 4.37701 4.39096 4.40768 4.63206 4.77015 4.89470 4.99149 5.10649 5.12596 5.15093 5.17450 5.23477 5.39244 5.40571 5.42289 5.69206 5.74558 5.75973 5.99844 6.00835 6.15075 6.57626 6.82167 7.25763 7.33137 7.49827 7.56005 7.83249 8.08189 8.12300 8.70570 8.88356 9.48341 10.95920 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.003366 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.147020 B = 8316.561485 C =10235.892129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.074 4.074 3 C -0.232 4.232 4 C 0.013 3.987 5 O -0.143 6.143 6 C -0.068 4.068 7 C 0.552 3.448 8 O -0.489 6.489 9 O -0.317 6.317 10 C 0.046 3.954 11 C 0.509 3.491 12 O -0.506 6.506 13 N -0.591 5.591 14 C 0.247 3.753 15 C -0.533 4.533 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.112 3.888 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.442 5.442 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.214 0.786 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 18.414 -3.752 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 C -0.251 4.251 4 C -0.058 4.058 5 O -0.037 6.037 6 C -0.118 4.118 7 C 0.397 3.603 8 O -0.379 6.379 9 O -0.232 6.232 10 C -0.031 4.031 11 C 0.293 3.707 12 O -0.380 6.380 13 N -0.325 5.325 14 C 0.129 3.871 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.014 4.014 24 C -0.093 4.093 25 C -0.102 4.102 26 N -0.120 5.120 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.177 0.823 31 H 0.231 0.769 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.601 17.566 -3.792 20.865 hybrid contribution 0.602 -0.016 0.988 1.157 sum -9.999 17.551 -2.804 20.393 Atomic orbital electron populations 1.20493 0.87885 1.03889 1.03236 1.20664 0.97711 0.90609 0.98655 1.21743 0.92247 1.00158 1.10956 1.24568 1.00169 0.80701 1.00351 1.84236 1.27627 1.22346 1.69535 1.20475 0.82262 0.91499 1.17610 1.19200 0.83935 0.83778 0.73404 1.90911 1.16851 1.83220 1.46936 1.86738 1.37939 1.15260 1.83214 1.23077 0.96917 0.78486 1.04652 1.19696 0.89341 0.82966 0.78675 1.90757 1.22758 1.76999 1.47533 1.48160 1.07336 1.05159 1.71850 1.19417 0.83227 0.86612 0.97877 1.21374 1.16772 1.26858 0.92176 0.92301 1.24908 0.95748 0.95713 0.97497 1.69901 1.21862 1.30409 1.30971 0.86558 0.78058 0.78234 0.84600 1.20206 1.21166 1.20118 1.21407 0.83875 1.02751 0.93385 1.19893 0.84677 1.03357 1.01336 1.29056 0.94727 0.93198 0.93227 1.81233 1.12635 1.09605 1.08479 0.90385 0.91033 0.89443 0.82268 0.76918 0.88122 0.88350 0.94270 0.93330 0.92528 0.88148 0.90598 0.87630 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.82 36.01 0.35 -0.50 16 2 C -0.07 -0.78 6.20 -104.42 -0.65 -1.43 16 3 C -0.23 -1.86 10.83 -39.89 -0.43 -2.29 16 4 C 0.01 0.11 12.08 29.64 0.36 0.46 16 5 O -0.14 -1.81 10.67 4.76 0.05 -1.76 16 6 C -0.07 -0.89 7.18 -36.85 -0.26 -1.16 16 7 C 0.55 7.99 7.93 34.04 0.27 8.26 16 8 O -0.49 -7.09 14.53 -19.36 -0.28 -7.37 16 9 O -0.32 -5.17 9.77 -48.37 -0.47 -5.64 16 10 C 0.05 0.66 4.51 36.00 0.16 0.82 16 11 C 0.51 9.55 7.75 -10.99 -0.09 9.46 16 12 O -0.51 -12.11 16.08 -14.10 -0.23 -12.33 16 13 N -0.59 -10.62 2.46 -175.07 -0.43 -11.05 16 14 C 0.25 5.72 5.16 -5.19 -0.03 5.69 16 15 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 25 C 0.22 2.60 15.44 -20.74 -0.32 2.28 16 26 N -0.44 -6.52 18.54 42.17 0.78 -5.74 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.87 6.45 -51.93 -0.33 0.54 16 30 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.10 1.27 7.40 -51.93 -0.38 0.89 16 33 H 0.10 1.11 7.18 -51.93 -0.37 0.74 16 34 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 39 H 0.11 0.87 7.22 -51.93 -0.37 0.50 16 40 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -35.09 364.03 -5.31 -40.40 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.68 Total: -3.17 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -1.25 Total: 9.59 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 1.09 Total: -41.24 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.93 Total: -27.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.09 -5.31 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022988743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.112 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds