Wall clock time and date at job start Tue Mar 31 2020 13:16:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53011 * 1
3 3 N 1.46498 * 109.46819 * 2 1
4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1
5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2
6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3
7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3
8 8 N 1.31513 * 120.00192 * 359.97438 * 7 5 4
9 9 Si 1.86796 * 119.99969 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47717 * 89.99326 * 9 7 5
11 11 H 1.48497 * 109.47284 * 209.99491 * 9 7 5
12 12 H 1.48504 * 109.46928 * 329.99484 * 9 7 5
13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1
14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2
15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2
16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2
17 17 C 1.46923 * 120.62553 * 269.71749 * 16 13 3
18 18 C 1.52760 * 109.00861 * 233.58205 * 17 16 13
19 19 C 1.53046 * 109.38256 * 305.58983 * 18 17 16
20 20 C 1.50698 * 109.44804 * 181.25321 * 19 18 17
21 21 O 1.20832 * 119.99825 * 239.94312 * 20 19 18
22 22 O 1.34224 * 120.00415 * 59.93871 * 20 19 18
23 23 C 1.53042 * 109.53591 * 61.23964 * 19 18 17
24 24 C 1.46921 * 120.63289 * 89.99671 * 16 13 3
25 25 H 1.08992 * 109.47062 * 60.00677 * 1 2 3
26 26 H 1.09000 * 109.46418 * 180.02562 * 1 2 3
27 27 H 1.08991 * 109.46892 * 299.99940 * 1 2 3
28 28 H 1.09001 * 109.46917 * 239.99998 * 2 1 3
29 29 H 1.09002 * 109.46995 * 119.99496 * 2 1 3
30 30 H 1.08996 * 109.47764 * 34.99918 * 4 3 2
31 31 H 1.09003 * 109.47361 * 155.00291 * 4 3 2
32 32 H 0.96993 * 120.00108 * 180.02562 * 8 7 5
33 33 H 1.09001 * 109.59343 * 353.42265 * 17 16 13
34 34 H 1.09010 * 109.58634 * 113.84364 * 17 16 13
35 35 H 1.09006 * 109.56563 * 185.55777 * 18 17 16
36 36 H 1.09001 * 109.35973 * 65.50306 * 18 17 16
37 37 H 1.08998 * 109.46354 * 301.21868 * 19 18 17
38 38 H 0.96700 * 117.00521 * 179.97438 * 22 20 19
39 39 H 1.08998 * 109.49686 * 178.67995 * 23 19 18
40 40 H 1.09001 * 109.49965 * 58.58641 * 23 19 18
41 41 H 1.08997 * 109.58689 * 246.15965 * 24 16 13
42 42 H 1.08998 * 109.58450 * 6.44081 * 24 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1582 2.1087 -1.2639
5 6 3.4948 1.7888 -1.8824
6 1 4.1724 1.1118 -1.3836
7 6 3.8529 2.3614 -3.0844
8 7 3.0280 3.1863 -3.6916
9 14 5.5093 1.9644 -3.8513
10 1 5.3732 0.7817 -4.7390
11 1 5.9787 3.1280 -4.6456
12 1 6.4929 1.6678 -2.7790
13 16 2.4122 2.1203 1.4286
14 8 2.7096 1.0800 2.3499
15 8 3.3283 3.1571 1.1048
16 7 1.0430 2.8642 1.9894
17 6 0.7403 4.2531 1.6181
18 6 0.5043 5.0677 2.8886
19 6 -0.5795 4.3916 3.7315
20 6 -0.8353 5.2104 4.9705
21 8 -0.6637 4.7231 6.0628
22 8 -1.2537 6.4810 4.8608
23 6 -0.1149 2.9899 4.1336
24 6 0.1112 2.1499 2.8726
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3632 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8899
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8900
30 1 1.3618 1.8097 -1.9453
31 1 2.0921 3.1803 -1.0756
32 1 3.2797 3.5888 -4.5374
33 1 1.5799 4.6751 1.0658
34 1 -0.1566 4.2787 0.9991
35 1 0.1826 6.0746 2.6222
36 1 1.4304 5.1207 3.4611
37 1 -1.4981 4.3167 3.1497
38 1 -1.4047 6.9662 5.6835
39 1 -0.8772 2.5178 4.7534
40 1 0.8169 3.0623 4.6944
41 1 -0.8380 2.0004 2.3581
42 1 0.5348 1.1836 3.1458
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000037838869.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:28
Heat of formation + Delta-G solvation = -175.108936 kcal
Electronic energy + Delta-G solvation = -26710.896720 eV
Core-core repulsion = 22817.424079 eV
Total energy + Delta-G solvation = -3893.472641 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.128 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.71824 -38.21388 -36.74136 -36.34751 -36.04032 -35.18253 -32.82356 -32.65371
-31.21919 -29.98357 -26.62871 -25.99566 -23.53179 -23.13636 -22.21104 -21.67618
-20.35480 -18.42006 -18.28031 -17.59966 -16.91445 -16.58320 -16.27695 -15.85424
-15.75643 -15.03220 -14.55159 -14.33631 -13.96509 -13.84450 -13.69799 -13.54008
-13.31499 -12.94775 -12.54134 -12.35027 -12.10454 -11.92806 -11.80325 -11.70615
-11.58141 -11.40246 -11.38323 -11.24161 -11.01978 -10.89403 -10.89208 -10.76873
-10.54915 -10.46099 -10.37969 -9.99389 -9.76312 -8.95551 -8.45033 -8.07621
-6.07466 -4.11121 1.15236 1.96840 2.78389 3.30964 3.37557 3.41388
3.44632 4.03873 4.37243 4.44036 4.52173 4.71825 4.81096 5.06630
5.08143 5.16141 5.24123 5.27496 5.39189 5.51739 5.54895 5.62509
5.67996 5.72286 5.73373 5.80023 5.93885 5.99422 6.09640 6.19096
6.25985 6.29309 6.57153 6.58384 6.74988 7.22790 7.40586 7.61757
7.65164 7.90476 8.19977 8.91315 9.54238 11.01042
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.020544 B = 0.003910 C = 0.003641
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1362.629406 B = 7158.626266 C = 7688.004267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.117 3.883
3 N -0.990 5.990
4 C 0.259 3.741
5 C -0.528 4.528
6 H 0.059 0.941
7 C 0.063 3.937
8 N -0.896 5.896
9 Si 0.896 3.104
10 H -0.280 1.280
11 H -0.285 1.285
12 H -0.272 1.272
13 S 2.777 3.223
14 O -0.995 6.995
15 O -0.961 6.961
16 N -1.013 6.013
17 C 0.121 3.879
18 C -0.123 4.123
19 C -0.077 4.077
20 C 0.483 3.517
21 O -0.516 6.516
22 O -0.515 6.515
23 C -0.117 4.117
24 C 0.121 3.879
25 H 0.061 0.939
26 H 0.058 0.942
27 H 0.048 0.952
28 H 0.084 0.916
29 H 0.075 0.925
30 H 0.035 0.965
31 H 0.036 0.964
32 H 0.263 0.737
33 H 0.103 0.897
34 H 0.072 0.928
35 H 0.089 0.911
36 H 0.073 0.927
37 H 0.113 0.887
38 H 0.408 0.592
39 H 0.082 0.918
40 H 0.077 0.923
41 H 0.069 0.931
42 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.012 2.054 12.720 17.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.010 4.010
3 N -0.832 5.832
4 C 0.137 3.863
5 C -0.568 4.568
6 H 0.078 0.922
7 C -0.139 4.139
8 N -0.535 5.535
9 Si 0.723 3.277
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.197 1.197
13 S 2.787 3.213
14 O -0.979 6.979
15 O -0.945 6.945
16 N -0.852 5.852
17 C -0.004 4.004
18 C -0.163 4.163
19 C -0.096 4.096
20 C 0.326 3.674
21 O -0.404 6.404
22 O -0.327 6.327
23 C -0.156 4.156
24 C -0.005 4.005
25 H 0.081 0.919
26 H 0.077 0.923
27 H 0.067 0.933
28 H 0.102 0.898
29 H 0.093 0.907
30 H 0.053 0.947
31 H 0.054 0.946
32 H 0.073 0.927
33 H 0.121 0.879
34 H 0.090 0.910
35 H 0.108 0.892
36 H 0.092 0.908
37 H 0.130 0.870
38 H 0.267 0.733
39 H 0.101 0.899
40 H 0.096 0.904
41 H 0.087 0.913
42 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -11.042 1.816 12.888 17.068
hybrid contribution 0.306 0.256 -0.150 0.426
sum -10.736 2.072 12.738 16.787
Atomic orbital electron populations
1.22275 0.97256 1.01415 1.02081 1.21144 0.93079 0.83278 1.03484
1.57777 1.80873 1.21353 1.23182 1.19011 0.97313 0.91021 0.78953
1.21500 1.02100 1.27640 1.05544 0.92234 1.24911 0.97338 0.94805
0.96872 1.69909 1.36127 1.30278 1.17188 0.86531 0.84083 0.77840
0.79218 1.20639 1.21065 1.19714 1.02096 0.73264 0.73137 0.72793
1.93509 1.83224 1.57767 1.63427 1.93615 1.59124 1.57648 1.84114
1.58519 1.42911 1.21891 1.61838 1.21309 1.03216 0.80243 0.95650
1.21839 0.97983 0.99574 0.96857 1.21058 1.02007 0.94367 0.92166
1.23641 0.72058 0.80134 0.91599 1.90722 1.48256 1.71755 1.29676
1.84554 1.79184 1.26561 1.42403 1.21814 1.03110 0.92701 0.97947
1.21382 0.94036 0.95564 0.89482 0.91947 0.92264 0.93301 0.89761
0.90684 0.94719 0.94612 0.92716 0.87850 0.90978 0.89247 0.90796
0.86956 0.73350 0.89917 0.90384 0.91266 0.88495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16
2 C 0.12 1.96 6.40 -4.04 -0.03 1.93 16
3 N -0.99 -19.81 2.82 -115.65 -0.33 -20.14 16
4 C 0.26 6.25 5.10 -5.19 -0.03 6.22 16
5 C -0.53 -14.57 9.38 -34.44 -0.32 -14.89 16
6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
8 N -0.90 -25.58 13.29 55.43 0.74 -24.85 16
9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16
10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
13 S 2.78 53.90 6.10 -107.50 -0.66 53.25 16
14 O -1.00 -20.25 15.28 -57.17 -0.87 -21.12 16
15 O -0.96 -22.40 15.69 -57.17 -0.90 -23.30 16
16 N -1.01 -14.57 3.35 -113.77 -0.38 -14.95 16
17 C 0.12 1.54 6.45 -3.93 -0.03 1.52 16
18 C -0.12 -1.29 5.28 -26.83 -0.14 -1.43 16
19 C -0.08 -0.73 2.59 -91.73 -0.24 -0.97 16
20 C 0.48 4.93 7.63 36.00 0.27 5.21 16
21 O -0.52 -6.81 16.74 -18.75 -0.31 -7.12 16
22 O -0.52 -3.98 13.30 -39.24 -0.52 -4.50 16
23 C -0.12 -1.23 4.65 -26.61 -0.12 -1.36 16
24 C 0.12 1.38 5.53 -3.71 -0.02 1.36 16
25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
27 H 0.05 0.58 6.44 -51.93 -0.33 0.24 16
28 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16
29 H 0.07 1.20 6.91 -51.93 -0.36 0.84 16
30 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16
31 H 0.04 0.91 7.61 -51.93 -0.40 0.51 16
32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
33 H 0.10 1.53 6.91 -51.93 -0.36 1.17 16
34 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16
35 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16
36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
37 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16
38 H 0.41 1.50 9.10 45.56 0.41 1.91 16
39 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16
40 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16
41 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16
42 H 0.10 1.16 6.92 -51.93 -0.36 0.80 16
LS Contribution 354.85 15.07 5.35 5.35
Total: -1.00 -34.98 354.85 -8.82 -43.80
By element:
Atomic # 1 Polarization: 5.18 SS G_CDS: -5.54 Total: -0.37 kcal
Atomic # 6 Polarization: -2.28 SS G_CDS: -0.37 Total: -2.65 kcal
Atomic # 7 Polarization: -59.96 SS G_CDS: 0.03 Total: -59.94 kcal
Atomic # 8 Polarization: -53.43 SS G_CDS: -2.61 Total: -56.04 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Atomic # 16 Polarization: 53.90 SS G_CDS: -0.66 Total: 53.25 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -34.98 -8.82 -43.80 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037838869.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -131.308 kcal
(2) G-P(sol) polarization free energy of solvation -34.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.292 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) -175.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds