Wall clock time and date at job start Tue Mar 31 2020 13:16:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53011 * 1
3 3 N 1.46498 * 109.46819 * 2 1
4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1
5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2
6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3
7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3
8 8 N 1.31513 * 120.00192 * 359.97438 * 7 5 4
9 9 Si 1.86796 * 119.99969 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47717 * 89.99326 * 9 7 5
11 11 H 1.48497 * 109.47284 * 209.99491 * 9 7 5
12 12 H 1.48504 * 109.46928 * 329.99484 * 9 7 5
13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1
14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2
15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2
16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2
17 17 C 1.46923 * 120.62553 * 269.71749 * 16 13 3
18 18 C 1.52760 * 109.00861 * 233.58205 * 17 16 13
19 19 C 1.53046 * 109.38256 * 305.58983 * 18 17 16
20 20 C 1.50698 * 109.44804 * 181.25321 * 19 18 17
21 21 O 1.20832 * 119.99825 * 239.94312 * 20 19 18
22 22 O 1.34224 * 120.00415 * 59.93871 * 20 19 18
23 23 C 1.53042 * 109.53591 * 61.23964 * 19 18 17
24 24 C 1.46921 * 120.63289 * 89.99671 * 16 13 3
25 25 H 1.08992 * 109.47062 * 60.00677 * 1 2 3
26 26 H 1.09000 * 109.46418 * 180.02562 * 1 2 3
27 27 H 1.08991 * 109.46892 * 299.99940 * 1 2 3
28 28 H 1.09001 * 109.46917 * 239.99998 * 2 1 3
29 29 H 1.09002 * 109.46995 * 119.99496 * 2 1 3
30 30 H 1.08996 * 109.47764 * 34.99918 * 4 3 2
31 31 H 1.09003 * 109.47361 * 155.00291 * 4 3 2
32 32 H 0.96993 * 120.00108 * 180.02562 * 8 7 5
33 33 H 1.09001 * 109.59343 * 353.42265 * 17 16 13
34 34 H 1.09010 * 109.58634 * 113.84364 * 17 16 13
35 35 H 1.09006 * 109.56563 * 185.55777 * 18 17 16
36 36 H 1.09001 * 109.35973 * 65.50306 * 18 17 16
37 37 H 1.08998 * 109.46354 * 301.21868 * 19 18 17
38 38 H 0.96700 * 117.00521 * 179.97438 * 22 20 19
39 39 H 1.08998 * 109.49686 * 178.67995 * 23 19 18
40 40 H 1.09001 * 109.49965 * 58.58641 * 23 19 18
41 41 H 1.08997 * 109.58689 * 246.15965 * 24 16 13
42 42 H 1.08998 * 109.58450 * 6.44081 * 24 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1582 2.1087 -1.2639
5 6 3.4948 1.7888 -1.8824
6 1 4.1724 1.1118 -1.3836
7 6 3.8529 2.3614 -3.0844
8 7 3.0280 3.1863 -3.6916
9 14 5.5093 1.9644 -3.8513
10 1 5.3732 0.7817 -4.7390
11 1 5.9787 3.1280 -4.6456
12 1 6.4929 1.6678 -2.7790
13 16 2.4122 2.1203 1.4286
14 8 2.7096 1.0800 2.3499
15 8 3.3283 3.1571 1.1048
16 7 1.0430 2.8642 1.9894
17 6 0.7403 4.2531 1.6181
18 6 0.5043 5.0677 2.8886
19 6 -0.5795 4.3916 3.7315
20 6 -0.8353 5.2104 4.9705
21 8 -0.6637 4.7231 6.0628
22 8 -1.2537 6.4810 4.8608
23 6 -0.1149 2.9899 4.1336
24 6 0.1112 2.1499 2.8726
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3632 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8899
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8900
30 1 1.3618 1.8097 -1.9453
31 1 2.0921 3.1803 -1.0756
32 1 3.2797 3.5888 -4.5374
33 1 1.5799 4.6751 1.0658
34 1 -0.1566 4.2787 0.9991
35 1 0.1826 6.0746 2.6222
36 1 1.4304 5.1207 3.4611
37 1 -1.4981 4.3167 3.1497
38 1 -1.4047 6.9662 5.6835
39 1 -0.8772 2.5178 4.7534
40 1 0.8169 3.0623 4.6944
41 1 -0.8380 2.0004 2.3581
42 1 0.5348 1.1836 3.1458
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037838869.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:27
Heat of formation + Delta-G solvation = -201.419872 kcal
Electronic energy + Delta-G solvation = -26712.037647 eV
Core-core repulsion = 22817.424079 eV
Total energy + Delta-G solvation = -3894.613568 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.128 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.50688 -39.14759 -38.36800 -37.63563 -37.09081 -36.84218 -34.69945 -33.77911
-32.15913 -31.46595 -28.47422 -26.94027 -24.92097 -24.43456 -23.27938 -23.00473
-21.25471 -19.72845 -19.09290 -19.00314 -18.34415 -18.29714 -17.51562 -17.30832
-16.65597 -16.52973 -15.93927 -15.49025 -15.27435 -14.90134 -14.73385 -14.62828
-14.54340 -14.45085 -13.85678 -13.64516 -13.50186 -13.40700 -13.29192 -13.04983
-12.98953 -12.73886 -12.67936 -12.57282 -12.47056 -12.24896 -12.19486 -12.11318
-11.77625 -11.73589 -11.68564 -11.54809 -11.39836 -10.57482 -10.05536 -9.74863
-8.18847 -6.29781 -0.35306 1.19898 1.38861 1.41178 1.51445 2.01046
2.15609 2.40580 2.58057 3.12127 3.35816 3.57039 3.66983 3.90825
4.03407 4.06051 4.14270 4.35487 4.42428 4.48849 4.52450 4.67862
4.70762 4.74090 4.77995 4.81661 4.89139 5.07116 5.08017 5.18010
5.19616 5.21892 5.25621 5.45800 5.53214 5.63215 5.68073 5.74794
6.02519 6.14605 6.78076 7.01267 7.38773 8.88297
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.020544 B = 0.003910 C = 0.003641
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1362.629406 B = 7158.626266 C = 7688.004267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.107 3.893
3 N -0.996 5.996
4 C 0.277 3.723
5 C -0.550 4.550
6 H 0.047 0.953
7 C 0.016 3.984
8 N -0.921 5.921
9 Si 0.951 3.049
10 H -0.266 1.266
11 H -0.278 1.278
12 H -0.277 1.277
13 S 2.787 3.213
14 O -1.009 7.009
15 O -1.009 7.009
16 N -1.005 6.005
17 C 0.116 3.884
18 C -0.117 4.117
19 C -0.074 4.074
20 C 0.491 3.509
21 O -0.551 6.551
22 O -0.509 6.509
23 C -0.114 4.114
24 C 0.115 3.885
25 H 0.052 0.948
26 H 0.086 0.914
27 H 0.066 0.934
28 H 0.070 0.930
29 H 0.082 0.918
30 H 0.029 0.971
31 H 0.018 0.982
32 H 0.267 0.733
33 H 0.075 0.925
34 H 0.100 0.900
35 H 0.111 0.889
36 H 0.055 0.945
37 H 0.144 0.856
38 H 0.426 0.574
39 H 0.100 0.900
40 H 0.053 0.947
41 H 0.104 0.896
42 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.960 1.999 13.074 19.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.018 4.018
3 N -0.837 5.837
4 C 0.153 3.847
5 C -0.590 4.590
6 H 0.065 0.935
7 C -0.184 4.184
8 N -0.560 5.560
9 Si 0.776 3.224
10 H -0.191 1.191
11 H -0.203 1.203
12 H -0.202 1.202
13 S 2.798 3.202
14 O -0.993 6.993
15 O -0.993 6.993
16 N -0.847 5.847
17 C -0.009 4.009
18 C -0.156 4.156
19 C -0.093 4.093
20 C 0.334 3.666
21 O -0.442 6.442
22 O -0.322 6.322
23 C -0.153 4.153
24 C -0.009 4.009
25 H 0.071 0.929
26 H 0.105 0.895
27 H 0.085 0.915
28 H 0.089 0.911
29 H 0.100 0.900
30 H 0.047 0.953
31 H 0.036 0.964
32 H 0.076 0.924
33 H 0.093 0.907
34 H 0.118 0.882
35 H 0.130 0.870
36 H 0.074 0.926
37 H 0.162 0.838
38 H 0.288 0.712
39 H 0.119 0.881
40 H 0.072 0.928
41 H 0.123 0.877
42 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -13.000 1.754 13.247 18.643
hybrid contribution 0.861 0.314 -0.178 0.934
sum -12.139 2.068 13.069 17.956
Atomic orbital electron populations
1.22197 0.94084 1.03363 1.02453 1.21382 0.95780 0.81481 1.03167
1.57672 1.81525 1.22609 1.21877 1.18540 0.95503 0.90369 0.80263
1.21849 1.03494 1.27576 1.06065 0.93482 1.25654 1.00574 0.94736
0.97393 1.69983 1.37569 1.30881 1.17594 0.85664 0.80020 0.78293
0.78392 1.19131 1.20273 1.20243 1.01484 0.73805 0.72421 0.72498
1.93479 1.84016 1.58352 1.63471 1.93548 1.61885 1.59068 1.84785
1.58118 1.42195 1.22555 1.61807 1.21485 1.03175 0.79182 0.97039
1.21779 0.97821 1.00408 0.95618 1.21065 1.02763 0.93389 0.92097
1.23642 0.71231 0.80622 0.91062 1.90721 1.49959 1.72614 1.30928
1.84506 1.78390 1.25523 1.43783 1.21773 1.02611 0.93607 0.97336
1.21695 0.94504 0.95091 0.89602 0.92924 0.89530 0.91501 0.91099
0.90015 0.95279 0.96361 0.92384 0.90659 0.88235 0.87042 0.92572
0.83849 0.71189 0.88141 0.92763 0.87748 0.89074
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.95 10.24 71.99 0.74 -3.21 16
2 C 0.11 3.55 6.40 86.38 0.55 4.11 16
3 N -1.00 -40.30 2.82 -519.82 -1.47 -41.76 16
4 C 0.28 13.67 5.10 85.64 0.44 14.11 16
5 C -0.55 -31.06 9.38 25.60 0.24 -30.82 16
6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16
7 C 0.02 0.91 5.46 84.65 0.46 1.37 16
8 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16
9 Si 0.95 44.55 29.54 68.60 2.03 46.58 16
10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16
13 S 2.79 109.93 6.10 -56.49 -0.34 109.59 16
14 O -1.01 -41.38 15.28 -128.00 -1.96 -43.33 16
15 O -1.01 -49.01 15.69 -128.00 -2.01 -51.01 16
16 N -1.01 -27.98 3.35 -513.86 -1.72 -29.71 16
17 C 0.12 2.82 6.45 86.22 0.56 3.38 16
18 C -0.12 -2.25 5.28 30.53 0.16 -2.09 16
19 C -0.07 -1.21 2.59 -11.51 -0.03 -1.24 16
20 C 0.49 8.84 7.63 71.24 0.54 9.39 16
21 O -0.55 -13.73 16.74 21.95 0.37 -13.36 16
22 O -0.51 -6.36 13.30 -51.36 -0.68 -7.04 16
23 C -0.11 -2.17 4.65 30.67 0.14 -2.03 16
24 C 0.12 2.36 5.53 86.36 0.48 2.83 16
25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.07 1.37 6.44 -2.39 -0.02 1.35 16
28 H 0.07 2.49 8.11 -2.39 -0.02 2.48 16
29 H 0.08 2.57 6.91 -2.39 -0.02 2.56 16
30 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16
31 H 0.02 0.97 7.61 -2.39 -0.02 0.95 16
32 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16
33 H 0.07 2.29 6.91 -2.39 -0.02 2.27 16
34 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16
35 H 0.11 1.67 8.08 -2.38 -0.02 1.65 16
36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
37 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16
38 H 0.43 1.97 9.10 -74.06 -0.67 1.30 16
39 H 0.10 1.59 8.07 -2.39 -0.02 1.57 16
40 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16
41 H 0.10 1.46 7.50 -2.39 -0.02 1.44 16
42 H 0.09 2.00 6.92 -2.39 -0.02 1.99 16
Total: -1.00 -77.22 354.85 -0.87 -78.09
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: 0.36 Total: 8.92 kcal
Atomic # 6 Polarization: -8.48 SS G_CDS: 4.28 Total: -4.20 kcal
Atomic # 7 Polarization: -121.31 SS G_CDS: -2.91 Total: -124.22 kcal
Atomic # 8 Polarization: -110.47 SS G_CDS: -4.28 Total: -114.75 kcal
Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal
Atomic # 16 Polarization: 109.93 SS G_CDS: -0.34 Total: 109.59 kcal
Total: -77.22 -0.87 -78.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037838869.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -123.330 kcal
(2) G-P(sol) polarization free energy of solvation -77.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.089 kcal
(6) G-S(sol) free energy of system = (1) + (5) -201.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds