Wall clock time and date at job start Tue Mar 31 2020 13:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50698 * 109.47117 * 119.99942 * 2 1 3 5 5 H 1.07995 * 120.00158 * 119.99866 * 4 2 1 6 6 C 1.37877 * 120.00022 * 300.00264 * 4 2 1 7 7 N 1.31514 * 119.99817 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47104 * 59.99621 * 8 6 4 10 10 H 1.48499 * 109.47255 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47055 * 300.00109 * 8 6 4 12 12 N 1.46897 * 109.46743 * 240.00042 * 2 1 3 13 13 C 1.46904 * 110.99487 * 183.95571 * 12 2 1 14 14 C 1.39082 * 111.00584 * 60.00275 * 12 2 1 15 15 C 1.39258 * 119.90606 * 59.99191 * 14 12 2 16 16 C 1.36552 * 120.22591 * 180.02562 * 15 14 12 17 17 C 1.40058 * 120.02624 * 359.97438 * 16 15 14 18 18 C 1.46874 * 120.09393 * 179.97438 * 17 16 15 19 19 C 1.35169 * 119.99937 * 359.97438 * 18 17 16 20 20 C 1.41708 * 119.99840 * 179.97438 * 19 18 17 21 21 O 1.21663 * 120.00059 * 0.02562 * 20 19 18 22 22 O 1.34938 * 120.00011 * 179.72529 * 20 19 18 23 23 C 1.40053 * 119.80863 * 0.27665 * 17 16 15 24 24 C 1.37613 * 119.77818 * 359.48496 * 23 17 16 25 25 N 1.48018 * 120.01664 * 180.25703 * 24 23 17 26 26 O 1.21806 * 120.00081 * 0.23491 * 25 24 23 27 27 O 1.21797 * 120.00397 * 180.23673 * 25 24 23 28 28 H 1.08997 * 109.47271 * 300.00284 * 1 2 3 29 29 H 1.08998 * 109.47193 * 60.00043 * 1 2 3 30 30 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99827 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47443 * 296.04289 * 13 12 2 33 33 H 1.09001 * 109.47338 * 56.04704 * 13 12 2 34 34 H 1.08999 * 109.46939 * 176.04299 * 13 12 2 35 35 H 1.08001 * 119.88709 * 0.02562 * 15 14 12 36 36 H 1.08001 * 119.98506 * 180.02562 * 16 15 14 37 37 H 1.08002 * 120.00243 * 180.02562 * 18 17 16 38 38 H 1.07992 * 119.99812 * 0.02562 * 19 18 17 39 39 H 0.96700 * 113.99948 * 180.27434 * 22 20 19 40 40 H 1.08000 * 120.10680 * 179.72641 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8268 -0.4199 5.2204 11 1 1.8258 -2.5202 4.0077 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7945 -1.1870 14 6 1.5737 -0.0619 -2.3561 15 6 1.9148 1.2664 -2.5983 16 6 1.4802 1.8921 -3.7315 17 6 0.6889 1.1982 -4.6557 18 6 0.2201 1.8699 -5.8748 19 6 0.5519 3.1598 -6.1059 20 6 0.1000 3.8077 -7.2824 21 8 -0.5869 3.2031 -8.0842 22 8 0.4265 5.0969 -7.5104 23 6 0.3407 -0.1361 -4.4108 24 6 0.7871 -0.7604 -3.2686 25 7 0.4270 -2.1721 -3.0074 26 8 -0.2611 -2.7828 -3.8056 27 8 0.8187 -2.7231 -1.9942 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7094 1.1618 3.4844 32 1 3.9192 0.2043 -1.2300 33 1 3.8069 -1.2916 -0.2718 34 1 3.8163 -1.3722 -2.0499 35 1 2.5252 1.8035 -1.8874 36 1 1.7474 2.9222 -3.9157 37 1 -0.3903 1.3336 -6.5862 38 1 1.1619 3.6962 -5.3943 39 1 0.0696 5.4530 -8.3356 40 1 -0.2729 -0.6743 -5.1180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:09 Heat of formation + Delta-G solvation = -26.475162 kcal Electronic energy + Delta-G solvation = -26779.752826 eV Core-core repulsion = 22757.281478 eV Total energy + Delta-G solvation = -4022.471348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70230 -40.61985 -39.90715 -37.41940 -36.42145 -35.81094 -34.23385 -32.86981 -31.87093 -30.00138 -29.31583 -26.51577 -25.92674 -24.88801 -24.00277 -22.82306 -22.01744 -20.17164 -19.99273 -18.71470 -18.16573 -17.85685 -17.30090 -16.96321 -16.47097 -16.24806 -15.90741 -15.41169 -15.17812 -14.81995 -14.25910 -14.09281 -13.93349 -13.24913 -13.13313 -12.78045 -12.73146 -12.41022 -11.97301 -11.89760 -11.69014 -11.21723 -11.03414 -10.98951 -10.95517 -10.83368 -10.69270 -10.60426 -10.48984 -10.39183 -10.31036 -10.10596 -9.63506 -9.18238 -8.59420 -8.53274 -7.71373 -6.16130 -4.21261 -0.12857 0.25077 1.31680 1.75538 1.87504 2.69387 2.96941 3.26568 3.31543 3.34828 3.37429 4.05122 4.27892 4.34401 4.39373 4.54003 4.78715 4.84102 5.02613 5.08733 5.17624 5.31794 5.47691 5.58131 5.81108 5.85432 5.86555 6.02420 6.05983 6.08025 6.24538 6.48088 6.54469 6.78063 6.79983 6.91440 7.14869 7.44082 7.53128 7.65248 7.80027 8.05269 8.25378 8.29942 8.82753 9.44214 10.90900 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.003329 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.933835 B = 8407.669469 C = 9421.336191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.223 3.777 3 H 0.009 0.991 4 C -0.506 4.506 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.507 5.507 13 C 0.044 3.956 14 C 0.220 3.780 15 C -0.160 4.160 16 C -0.037 4.037 17 C -0.114 4.114 18 C 0.030 3.970 19 C -0.225 4.225 20 C 0.517 3.483 21 O -0.526 6.526 22 O -0.507 6.507 23 C -0.022 4.022 24 C -0.044 4.044 25 N 0.028 4.972 26 O -0.221 6.221 27 O -0.071 6.071 28 H 0.093 0.907 29 H -0.003 1.003 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.022 0.978 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.409 0.591 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 6.533 -15.509 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.120 3.880 3 H 0.026 0.974 4 C -0.544 4.544 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.229 5.229 13 C -0.102 4.102 14 C 0.122 3.878 15 C -0.181 4.181 16 C -0.056 4.056 17 C -0.115 4.115 18 C 0.011 3.989 19 C -0.243 4.243 20 C 0.365 3.635 21 O -0.418 6.418 22 O -0.317 6.317 23 C -0.042 4.042 24 C -0.128 4.128 25 N 0.551 4.449 26 O -0.418 6.418 27 O -0.309 6.309 28 H 0.111 0.889 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.265 0.735 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.694 6.535 -15.427 16.839 hybrid contribution 0.166 0.388 0.440 0.610 sum 1.860 6.923 -14.987 16.613 Atomic orbital electron populations 1.21888 0.97442 1.00274 0.99888 1.19454 0.92496 0.91829 0.84196 0.97394 1.21020 1.31726 1.12675 0.89027 0.91159 1.24914 0.94953 0.94996 0.99139 1.69864 1.36522 1.22899 1.23927 0.86487 0.79031 0.79935 0.81594 1.20229 1.21373 1.19899 1.60062 1.11152 1.51593 1.00100 1.22303 0.85008 0.99642 1.03225 1.19203 0.87953 0.90091 0.90524 1.21701 1.02761 0.94913 0.98691 1.21429 0.92256 0.99987 0.91888 1.18657 1.03186 0.93218 0.96456 1.22447 0.90570 0.93158 0.92681 1.21184 1.08386 0.96211 0.98559 1.19595 0.77244 0.80182 0.86500 1.90964 1.36947 1.66049 1.47830 1.85081 1.72445 1.27543 1.46640 1.21104 0.95100 0.93545 0.94414 1.21120 1.08201 0.83969 0.99531 1.43295 0.99059 1.02370 1.00223 1.94475 1.37799 1.65372 1.44147 1.94698 1.53100 1.68670 1.14400 0.88881 0.98360 0.93976 0.92688 0.95937 0.88470 0.93417 0.83282 0.83987 0.83821 0.84004 0.73461 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.84 37.16 0.33 -2.91 16 2 C 0.22 5.13 1.83 -68.87 -0.13 5.01 16 3 H 0.01 0.21 7.09 -51.93 -0.37 -0.16 16 4 C -0.51 -12.84 7.88 -34.44 -0.27 -13.11 16 5 H 0.07 1.77 6.40 -52.49 -0.34 1.44 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.51 -10.02 2.46 -172.64 -0.43 -10.45 16 13 C 0.04 0.76 9.10 60.07 0.55 1.31 16 14 C 0.22 3.76 3.30 -83.81 -0.28 3.48 16 15 C -0.16 -2.24 8.48 -39.81 -0.34 -2.58 16 16 C -0.04 -0.40 9.35 -39.51 -0.37 -0.77 16 17 C -0.11 -1.25 5.87 -105.04 -0.62 -1.87 16 18 C 0.03 0.28 9.41 -37.18 -0.35 -0.07 16 19 C -0.22 -1.96 9.33 -39.35 -0.37 -2.33 16 20 C 0.52 4.99 8.05 32.06 0.26 5.25 16 21 O -0.53 -6.55 16.84 -19.39 -0.33 -6.88 16 22 O -0.51 -3.71 13.54 -41.14 -0.56 -4.27 16 23 C -0.02 -0.29 9.30 -39.13 -0.36 -0.65 16 24 C -0.04 -0.73 6.87 -79.80 -0.55 -1.27 16 25 N 0.03 0.54 4.45 34.04 0.15 0.69 16 26 O -0.22 -4.13 18.45 -29.46 -0.54 -4.67 16 27 O -0.07 -1.52 17.10 -29.46 -0.50 -2.02 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.00 -0.06 7.22 -51.93 -0.37 -0.43 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.02 0.35 7.31 -51.93 -0.38 -0.03 16 33 H 0.10 1.80 6.10 -51.93 -0.32 1.48 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.15 2.04 6.98 -52.49 -0.37 1.68 16 36 H 0.14 1.09 6.15 -52.49 -0.32 0.77 16 37 H 0.14 1.27 7.45 -52.49 -0.39 0.88 16 38 H 0.14 1.00 6.06 -52.49 -0.32 0.68 16 39 H 0.41 1.29 8.98 45.56 0.41 1.70 16 40 H 0.16 1.74 7.61 -52.49 -0.40 1.35 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -30.84 345.96 -7.43 -38.27 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.46 Total: 1.17 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.59 Total: -9.02 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.35 Total: -33.12 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -1.93 Total: -17.85 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.84 -7.43 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.793 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds