Wall clock time and date at job start Tue Mar 31 2020 13:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00041 * 2 1 4 4 C 1.50702 * 109.47168 * 270.00169 * 3 2 1 5 5 H 1.07999 * 120.00265 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00179 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99722 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46805 * 60.00209 * 8 6 4 10 10 H 1.48501 * 109.46764 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46997 * 300.00073 * 8 6 4 12 12 C 1.34780 * 120.00103 * 180.02562 * 2 1 3 13 13 O 1.21581 * 120.00260 * 179.97438 * 12 2 1 14 14 N 1.34784 * 119.99701 * 359.97438 * 12 2 1 15 15 C 1.40077 * 119.99688 * 184.43877 * 14 12 2 16 16 C 1.38703 * 120.04352 * 325.32821 * 15 14 12 17 17 C 1.38717 * 119.88673 * 180.25630 * 16 15 14 18 18 N 1.40314 * 120.00768 * 179.70118 * 17 16 15 19 19 C 1.35059 * 127.38623 * 179.70738 * 18 17 16 20 20 N 1.30742 * 107.27477 * 179.84391 * 19 18 17 21 21 N 1.28427 * 110.64182 * 0.44088 * 20 19 18 22 22 N 1.28946 * 110.19997 * 359.72494 * 21 20 19 23 23 C 1.38853 * 119.98092 * 359.42635 * 17 16 15 24 24 C 1.38175 * 120.08794 * 0.57303 * 23 17 16 25 25 C 1.38332 * 120.10785 * 359.72837 * 24 23 17 26 26 F 1.35104 * 119.98686 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46996 * 269.99996 * 1 2 3 28 28 H 1.09004 * 109.47269 * 29.99376 * 1 2 3 29 29 H 1.09004 * 109.47293 * 150.00146 * 1 2 3 30 30 H 1.08997 * 109.47283 * 30.00618 * 3 2 1 31 31 H 1.09001 * 109.47292 * 150.00275 * 3 2 1 32 32 H 0.97000 * 120.00022 * 180.02562 * 7 6 4 33 33 H 0.96993 * 119.99790 * 4.43957 * 14 12 2 34 34 H 1.07997 * 120.06083 * 359.97438 * 16 15 14 35 35 H 1.08005 * 126.35894 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.95355 * 180.29985 * 23 17 16 37 37 H 1.08003 * 119.94284 * 179.70204 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4375 3.4171 -3.4339 9 1 2.1397 3.5956 -4.1331 10 1 4.1802 4.7031 -3.4338 11 1 4.2391 2.3820 -4.1347 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0010 14 7 1.4649 -2.3345 -0.0005 15 6 2.1622 -3.5458 0.0928 16 6 3.4073 -3.6780 -0.5039 17 6 4.0926 -4.8807 -0.4140 18 7 5.3496 -5.0194 -1.0220 19 6 6.1436 -6.1118 -1.0239 20 7 7.2170 -5.8105 -1.7069 21 7 7.1596 -4.5990 -2.1291 22 7 6.0551 -4.0488 -1.7548 23 6 3.5370 -5.9455 0.2828 24 6 2.2966 -5.8128 0.8770 25 6 1.6072 -4.6171 0.7843 26 9 0.3943 -4.4902 1.3657 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8901 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0319 4.4430 -0.8503 33 1 0.4972 -2.3356 -0.0652 34 1 3.8405 -2.8476 -1.0416 35 1 5.9301 -7.0594 -0.5516 36 1 4.0731 -6.8802 0.3566 37 1 1.8645 -6.6441 1.4142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085582952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:29 Heat of formation + Delta-G solvation = 99.204516 kcal Electronic energy + Delta-G solvation = -26189.915519 eV Core-core repulsion = 22114.019248 eV Total energy + Delta-G solvation = -4075.896271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.20802 -43.32808 -40.54132 -39.01413 -35.79550 -35.01085 -34.24191 -32.64527 -32.43371 -30.56647 -29.59750 -27.77103 -25.99583 -25.21258 -24.40454 -23.10095 -22.37531 -21.90014 -19.76149 -19.17141 -17.98112 -17.62730 -16.80910 -16.73742 -16.64557 -16.32635 -15.97132 -15.87034 -15.09334 -14.72720 -14.24403 -14.12692 -13.88774 -13.72359 -13.51163 -13.25571 -13.11645 -12.82321 -12.42889 -12.23691 -12.05919 -11.87900 -11.57864 -11.24855 -11.17284 -10.96536 -10.64623 -10.61133 -10.49928 -10.19500 -9.74749 -9.50983 -8.94377 -8.46713 -8.40635 -7.79267 -6.08059 -4.13438 0.04084 0.79125 1.29431 1.56378 2.11964 2.77259 3.09214 3.31315 3.36530 3.40138 3.64956 3.74726 3.87333 3.95860 4.23520 4.36862 4.44650 4.51989 4.63141 4.94844 4.98814 5.20672 5.26376 5.32048 5.40560 5.50251 5.72371 5.77261 5.85952 6.00341 6.04115 6.31795 6.54054 6.68068 7.19837 7.35217 7.48892 7.87788 8.15950 8.25740 8.34438 8.83914 9.00706 9.52101 10.99929 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.004235 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.626912 B = 6609.657061 C = 8819.241858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.696 3.304 13 O -0.560 6.560 14 N -0.691 5.691 15 C 0.177 3.823 16 C -0.082 4.082 17 C 0.138 3.862 18 N -0.324 5.324 19 C 0.221 3.779 20 N -0.333 5.333 21 N -0.038 5.038 22 N -0.055 5.055 23 C -0.121 4.121 24 C -0.109 4.109 25 C 0.070 3.930 26 F -0.130 7.130 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.409 0.591 34 H 0.176 0.824 35 H 0.239 0.761 36 H 0.144 0.856 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -22.046 4.474 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.340 5.340 3 C 0.140 3.860 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.398 3.602 13 O -0.436 6.436 14 N -0.341 5.341 15 C 0.078 3.922 16 C -0.105 4.105 17 C 0.044 3.956 18 N -0.114 5.114 19 C -0.076 4.076 20 N -0.182 5.182 21 N -0.033 5.033 22 N -0.040 5.040 23 C -0.143 4.143 24 C -0.129 4.129 25 C 0.047 3.953 26 F -0.109 7.109 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.247 0.753 34 H 0.193 0.807 35 H 0.255 0.745 36 H 0.161 0.839 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.092 -20.799 3.744 21.738 hybrid contribution -1.342 -0.035 -0.293 1.374 sum -6.434 -20.834 3.452 22.077 Atomic orbital electron populations 1.21646 0.81358 1.02557 1.00713 1.47542 1.05946 1.06149 1.74385 1.19318 0.92404 0.76507 0.97732 1.21375 1.37012 1.06473 0.92151 0.92476 1.24912 0.95146 0.96298 0.97503 1.69912 1.38068 1.14387 1.30854 0.86554 0.78378 0.77944 0.84559 1.20274 1.21098 1.20030 1.15924 0.85582 0.79954 0.78751 1.90927 1.11088 1.85187 1.56396 1.42964 1.10472 1.03098 1.77601 1.17237 0.93307 0.85523 0.96165 1.21193 0.93684 0.96972 0.98674 1.17355 0.82923 0.96109 0.99176 1.49065 1.15104 1.10332 1.36894 1.27397 0.87365 0.94902 0.97983 1.74470 1.20644 1.08308 1.14733 1.78144 1.10670 1.00657 1.13860 1.82953 1.01144 1.10886 1.08971 1.20544 0.96278 0.97828 0.99690 1.20691 0.94325 0.96541 1.01311 1.17551 0.83804 0.95368 0.98572 1.91508 1.40932 1.96446 1.82020 0.93303 0.89921 0.93165 0.94532 0.93530 0.92549 0.75266 0.80656 0.74485 0.83874 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.24 59.85 0.61 1.80 16 2 N -0.61 -12.32 2.86 -188.74 -0.54 -12.85 16 3 C 0.26 6.59 5.16 -5.20 -0.03 6.57 16 4 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.70 14.04 8.12 -86.91 -0.71 13.33 16 13 O -0.56 -13.60 13.34 5.29 0.07 -13.53 16 14 N -0.69 -10.36 5.11 -14.18 -0.07 -10.43 16 15 C 0.18 2.42 6.31 -83.61 -0.53 1.89 16 16 C -0.08 -1.23 8.34 -39.23 -0.33 -1.56 16 17 C 0.14 1.60 6.70 -83.57 -0.56 1.04 16 18 N -0.32 -4.11 3.86 -11.74 -0.05 -4.15 16 19 C 0.22 2.10 12.16 -90.16 -1.10 1.00 16 20 N -0.33 -4.47 12.15 29.64 0.36 -4.11 16 21 N -0.04 -0.63 13.39 60.35 0.81 0.17 16 22 N -0.05 -0.92 13.33 60.35 0.80 -0.12 16 23 C -0.12 -0.87 9.48 -39.38 -0.37 -1.25 16 24 C -0.11 -0.79 10.01 -39.57 -0.40 -1.19 16 25 C 0.07 0.73 7.31 -39.24 -0.29 0.45 16 26 F -0.13 -1.36 16.95 2.25 0.04 -1.32 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.05 0.57 6.30 -51.93 -0.33 0.24 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.41 4.89 6.35 -40.82 -0.26 4.63 16 34 H 0.18 3.34 5.90 -52.49 -0.31 3.03 16 35 H 0.24 0.68 7.19 -52.48 -0.38 0.31 16 36 H 0.14 0.42 6.87 -52.49 -0.36 0.06 16 37 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -35.94 332.31 -5.21 -41.15 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.25 Total: 0.24 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -4.11 Total: 8.68 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 2.05 Total: -57.07 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.07 Total: -13.53 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.94 -5.21 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085582952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.350 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds