Wall clock time and date at job start Tue Mar 31 2020 12:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35376 * 126.13555 * 2 1 4 4 Cl 1.73598 * 126.04743 * 0.03208 * 3 2 1 5 5 C 1.39925 * 107.90863 * 180.02562 * 3 2 1 6 6 N 1.30849 * 108.21529 * 359.71171 * 5 3 2 7 7 N 1.35043 * 126.13913 * 180.02562 * 2 1 3 8 8 C 1.46502 * 126.03441 * 359.97438 * 7 2 1 9 9 N 1.46904 * 109.46969 * 89.99798 * 8 7 2 10 10 C 1.46905 * 111.00100 * 66.04617 * 9 8 7 11 11 C 1.50700 * 109.46885 * 293.95288 * 10 9 8 12 12 H 1.07997 * 119.99834 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99884 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99896 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99869 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47074 * 89.99478 * 15 13 11 17 17 H 1.48496 * 109.47037 * 209.99406 * 15 13 11 18 18 H 1.48499 * 109.47037 * 329.99850 * 15 13 11 19 19 C 1.46896 * 110.99889 * 189.99825 * 9 8 7 20 20 C 1.50706 * 109.47320 * 169.99825 * 19 9 8 21 21 C 1.38675 * 120.41529 * 89.99996 * 20 19 9 22 22 C 1.38631 * 118.41792 * 179.97438 * 21 20 19 23 23 C 1.38221 * 119.16077 * 0.25627 * 22 21 20 24 24 N 1.31860 * 120.76509 * 359.49797 * 23 22 21 25 25 C 1.31882 * 121.72556 * 0.49011 * 24 23 22 26 26 H 1.09000 * 109.47332 * 269.98119 * 1 2 3 27 27 H 1.08997 * 109.47565 * 29.97727 * 1 2 3 28 28 H 1.09001 * 109.47261 * 149.98480 * 1 2 3 29 29 H 1.08001 * 125.89266 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.47396 * 329.99898 * 8 7 2 31 31 H 1.08997 * 109.47456 * 209.99654 * 8 7 2 32 32 H 1.09004 * 109.46773 * 53.95127 * 10 9 8 33 33 H 1.08997 * 109.46918 * 173.95057 * 10 9 8 34 34 H 0.97006 * 119.99571 * 180.02562 * 14 13 11 35 35 H 1.09008 * 109.47342 * 49.99939 * 19 9 8 36 36 H 1.08998 * 109.47612 * 289.99867 * 19 9 8 37 37 H 1.07998 * 120.79161 * 359.96013 * 21 20 19 38 38 H 1.08002 * 120.41548 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.62066 * 179.74470 * 23 22 21 40 40 H 1.07993 * 119.62126 * 179.75488 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3052 1.0933 0.0000 4 17 1.7741 2.7460 0.0008 5 6 3.6343 0.6557 -0.0006 6 7 3.6340 -0.6528 0.0053 7 7 2.3033 -1.0906 -0.0005 8 6 1.8548 -2.4853 -0.0006 9 7 1.7044 -2.9511 -1.3857 10 6 3.0043 -3.0020 -2.0681 11 6 3.5484 -1.6046 -2.2170 12 1 2.9848 -0.7629 -1.8425 13 6 4.7658 -1.4006 -2.8313 14 7 5.2404 -0.1811 -2.9617 15 14 5.7404 -2.8565 -3.4797 16 1 5.3541 -3.1227 -4.8887 17 1 7.1917 -2.5494 -3.4139 18 1 5.4498 -4.0547 -2.6521 19 6 1.0342 -4.2575 -1.4318 20 6 0.6775 -4.5891 -2.8580 21 6 1.5701 -5.2818 -3.6620 22 6 1.1993 -5.5654 -4.9673 23 6 -0.0368 -5.1465 -5.4224 24 7 -0.8623 -4.4937 -4.6279 25 6 -0.5432 -4.2071 -3.3808 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 4.5093 1.2887 -0.0011 30 1 0.8965 -2.5589 0.5136 31 1 2.5910 -3.1038 0.5128 32 1 3.6996 -3.6020 -1.4811 33 1 2.8798 -3.4504 -3.0538 34 1 6.0968 -0.0377 -3.3943 35 1 0.1265 -4.2217 -0.8292 36 1 1.7023 -5.0229 -1.0371 37 1 2.5314 -5.5928 -3.2804 38 1 1.8696 -6.1028 -5.6218 39 1 -0.3317 -5.3598 -6.4393 40 1 -1.2438 -3.6673 -2.7611 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156461317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:06 Heat of formation + Delta-G solvation = 131.816908 kcal Electronic energy + Delta-G solvation = -25183.566053 eV Core-core repulsion = 21640.960681 eV Total energy + Delta-G solvation = -3542.605373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12950 -41.09395 -38.40728 -37.07971 -34.62022 -34.09999 -33.12986 -32.66429 -31.59647 -29.93736 -27.54403 -27.18991 -25.42214 -24.46034 -23.42400 -22.11597 -21.77108 -20.44473 -19.13476 -17.98769 -17.67840 -17.29127 -16.74397 -16.48528 -16.13963 -15.68362 -15.48810 -15.20285 -14.92857 -14.51292 -14.37509 -14.27543 -13.99210 -13.94394 -13.91866 -13.39800 -13.35936 -13.09173 -12.85932 -12.67078 -12.48900 -12.43758 -12.10261 -11.92717 -11.80505 -11.08050 -10.96943 -10.71756 -10.52674 -10.38714 -10.02518 -9.83023 -9.23248 -8.87997 -8.04826 -5.96092 0.20096 0.36872 1.08192 1.27611 1.30964 1.36440 1.43875 2.05837 2.22521 2.41139 2.82586 3.26875 3.31469 3.60205 3.81511 3.91273 3.93120 3.97196 4.10949 4.14703 4.23717 4.29362 4.45847 4.57057 4.60486 4.77782 4.81806 4.85426 4.89254 4.91896 5.02880 5.15976 5.20797 5.28371 5.36494 5.63069 5.77517 5.82231 5.89788 6.08845 6.41967 6.69034 7.02328 7.07140 7.07976 7.54663 9.07384 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.005438 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.971248 B = 5147.568650 C = 6576.637561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.102 3.898 3 C -0.206 4.206 4 Cl -0.057 7.057 5 C 0.038 3.962 6 N -0.236 5.236 7 N -0.350 5.350 8 C 0.310 3.690 9 N -0.549 5.549 10 C 0.170 3.830 11 C -0.481 4.481 12 H 0.079 0.921 13 C 0.022 3.978 14 N -0.928 5.928 15 Si 0.911 3.089 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.256 1.256 19 C 0.101 3.899 20 C -0.128 4.128 21 C -0.083 4.083 22 C -0.179 4.179 23 C 0.085 3.915 24 N -0.512 5.512 25 C 0.110 3.890 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.059 0.941 32 H -0.020 1.020 33 H 0.024 0.976 34 H 0.253 0.747 35 H 0.123 0.877 36 H 0.051 0.949 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 -8.731 5.369 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.245 4.245 4 Cl -0.029 7.029 5 C -0.150 4.150 6 N -0.054 5.054 7 N -0.134 5.134 8 C 0.100 3.900 9 N -0.275 5.275 10 C 0.043 3.957 11 C -0.520 4.520 12 H 0.097 0.903 13 C -0.175 4.175 14 N -0.570 5.570 15 Si 0.738 3.262 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.181 1.181 19 C -0.026 4.026 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.199 4.199 23 C -0.071 4.071 24 N -0.220 5.220 25 C -0.047 4.047 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.178 0.822 30 H 0.160 0.840 31 H 0.077 0.923 32 H -0.003 1.003 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.141 0.859 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.194 0.806 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.856 -9.140 4.775 16.481 hybrid contribution 2.491 -0.074 -0.324 2.513 sum -10.366 -9.213 4.451 14.565 Atomic orbital electron populations 1.20515 0.84410 1.04626 1.04504 1.20999 0.95937 0.85894 0.99882 1.20472 0.93067 0.85981 1.24998 1.98231 1.90119 1.16507 1.98030 1.23352 0.96457 0.92438 1.02772 1.77624 0.97777 1.11406 1.18624 1.48276 1.02850 1.05813 1.56480 1.22093 1.00715 0.77200 0.89995 1.61920 1.23527 1.27075 1.14932 1.20046 0.85576 0.96328 0.93723 1.21695 1.03121 0.93247 1.33967 0.90323 1.25393 0.98572 0.96524 0.97017 1.70013 1.19726 1.21433 1.45803 0.86287 0.78360 0.82459 0.79072 1.20584 1.22300 1.18069 1.20987 1.00276 0.88703 0.92644 1.20815 0.95652 0.98689 0.97835 1.21753 0.98763 0.95791 0.94618 1.22373 0.98721 1.02270 0.96528 1.23150 0.90334 0.93447 1.00205 1.67708 1.35765 1.12972 1.05596 1.22900 0.95048 0.95160 0.91547 0.87793 0.90186 0.89339 0.82168 0.83994 0.92280 1.00290 0.95761 0.93771 0.85875 0.93100 0.85507 0.82963 0.80582 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.73 71.23 0.69 -1.28 16 2 C 0.10 3.55 6.42 41.40 0.27 3.82 16 3 C -0.21 -8.14 6.55 22.02 0.14 -8.00 16 4 Cl -0.06 -1.93 28.88 -2.72 -0.08 -2.01 16 5 C 0.04 1.71 11.35 85.25 0.97 2.67 16 6 N -0.24 -11.00 9.31 -56.98 -0.53 -11.53 16 7 N -0.35 -13.29 2.29 -344.03 -0.79 -14.08 16 8 C 0.31 9.22 5.75 170.80 0.98 10.21 16 9 N -0.55 -18.11 4.68 -917.71 -4.30 -22.41 16 10 C 0.17 7.40 3.58 85.56 0.31 7.70 16 11 C -0.48 -25.72 6.76 25.60 0.17 -25.54 16 12 H 0.08 4.53 4.06 -2.91 -0.01 4.52 16 13 C 0.02 1.27 5.47 84.66 0.46 1.74 16 14 N -0.93 -56.67 13.96 21.45 0.30 -56.37 16 15 Si 0.91 44.39 27.47 68.60 1.88 46.27 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 18 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 19 C 0.10 2.40 5.14 85.56 0.44 2.84 16 20 C -0.13 -3.40 4.92 -19.77 -0.10 -3.50 16 21 C -0.08 -2.28 8.03 22.47 0.18 -2.10 16 22 C -0.18 -4.43 10.11 22.36 0.23 -4.20 16 23 C 0.09 2.12 11.18 84.68 0.95 3.06 16 24 N -0.51 -14.46 10.36 -195.85 -2.03 -16.49 16 25 C 0.11 2.89 10.86 84.67 0.92 3.81 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 28 H 0.09 1.90 7.73 -2.39 -0.02 1.88 16 29 H 0.16 7.31 8.06 -2.91 -0.02 7.29 16 30 H 0.14 2.74 7.45 -2.39 -0.02 2.72 16 31 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 32 H -0.02 -0.93 7.12 -2.38 -0.02 -0.94 16 33 H 0.02 1.09 4.93 -2.39 -0.01 1.08 16 34 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.12 1.91 7.88 -2.38 -0.02 1.89 16 36 H 0.05 1.14 8.07 -2.39 -0.02 1.13 16 37 H 0.13 3.46 7.90 -2.91 -0.02 3.43 16 38 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -72.72 343.33 2.07 -70.65 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.00 Total: 14.73 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 6.61 Total: -8.77 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -7.35 Total: -120.88 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -72.72 2.07 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156461317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.465 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds