Wall clock time and date at job start Tue Mar 31 2020 12:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47338 * 2 1 4 4 N 1.46503 * 109.47335 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99900 * 264.03565 * 4 3 2 6 6 H 1.07997 * 119.99729 * 188.80918 * 5 4 3 7 7 C 1.38808 * 119.99832 * 8.80614 * 5 4 3 8 8 N 1.31628 * 120.00362 * 24.45896 * 7 5 4 9 9 Si 1.86806 * 119.99910 * 204.45898 * 7 5 4 10 10 H 1.48494 * 109.46893 * 84.98269 * 9 7 5 11 11 H 1.48502 * 109.46923 * 204.98338 * 9 7 5 12 12 H 1.48493 * 109.46834 * 324.98276 * 9 7 5 13 13 C 1.46494 * 119.99940 * 84.03431 * 4 3 2 14 14 C 1.50707 * 109.46965 * 270.00118 * 13 4 3 15 15 C 1.35376 * 126.72922 * 94.98648 * 14 13 4 16 16 N 1.36114 * 106.04895 * 180.02562 * 15 14 13 17 17 C 1.40267 * 125.94320 * 180.02562 * 16 15 14 18 18 C 1.38817 * 120.04865 * 359.71668 * 17 16 15 19 19 C 1.38115 * 119.94640 * 179.72450 * 18 17 16 20 20 C 1.38394 * 120.04620 * 0.55578 * 19 18 17 21 21 Cl 1.73606 * 119.94245 * 179.74211 * 20 19 18 22 22 C 1.38382 * 120.10793 * 359.72517 * 20 19 18 23 23 C 1.38112 * 120.04847 * 359.97438 * 22 20 19 24 24 N 1.28730 * 108.11348 * 359.97438 * 16 15 14 25 25 N 1.28605 * 110.23694 * 0.02562 * 24 16 15 26 26 H 1.08994 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47362 * 300.00668 * 1 2 3 28 28 H 1.09006 * 109.47007 * 60.00057 * 1 2 3 29 29 H 1.09000 * 109.46695 * 239.99612 * 2 1 3 30 30 H 1.08999 * 109.46692 * 119.99691 * 2 1 3 31 31 H 1.09004 * 109.47636 * 59.99638 * 3 2 1 32 32 H 1.09006 * 109.47025 * 299.99932 * 3 2 1 33 33 H 0.96992 * 119.99942 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47446 * 150.00581 * 13 4 3 35 35 H 1.08995 * 109.47730 * 29.99901 * 13 4 3 36 36 H 1.07992 * 126.97736 * 0.02878 * 15 14 13 37 37 H 1.07998 * 120.03204 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.98058 * 180.25663 * 19 18 17 39 39 H 1.07998 * 119.97671 * 179.97438 * 22 20 19 40 40 H 1.08002 * 120.02291 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.5658 1.1804 6 1 5.2597 1.7088 1.1714 7 6 3.5069 1.5071 2.3878 8 7 2.3529 0.8784 2.4618 9 14 4.2265 2.3205 3.9078 10 1 3.8485 3.7564 3.9266 11 1 3.6967 1.6531 5.1240 12 1 5.7061 2.1983 3.8809 13 6 4.2381 1.3103 -1.2609 14 6 4.4893 -0.1481 -1.5455 15 6 3.7329 -0.9646 -2.3162 16 7 4.3398 -2.1825 -2.2826 17 6 3.9013 -3.3394 -2.9434 18 6 2.7466 -3.3048 -3.7133 19 6 2.3199 -4.4437 -4.3677 20 6 3.0362 -5.6217 -4.2470 21 17 2.4936 -7.0535 -5.0653 22 6 4.1843 -5.6601 -3.4754 23 6 4.6183 -4.5221 -2.8242 24 7 5.3868 -2.0875 -1.5397 25 7 5.5033 -0.8898 -1.0861 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 1.8764 0.8371 3.3055 34 1 5.1905 1.8348 -1.1843 35 1 3.6494 1.7423 -2.0702 36 1 2.8311 -0.7028 -2.8495 37 1 2.1846 -2.3870 -3.8037 38 1 1.4240 -4.4164 -4.9700 39 1 4.7414 -6.5806 -3.3824 40 1 5.5146 -4.5524 -2.2225 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163100842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:20 Heat of formation + Delta-G solvation = 135.562606 kcal Electronic energy + Delta-G solvation = -24312.817857 eV Core-core repulsion = 20770.374910 eV Total energy + Delta-G solvation = -3542.442947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.33088 -40.47890 -38.14893 -37.61987 -35.50038 -33.76381 -33.69755 -32.55876 -31.58959 -30.68863 -27.75152 -27.32074 -25.28857 -24.54201 -23.51649 -22.46517 -21.83840 -21.48385 -19.44621 -18.67245 -17.78594 -17.47170 -16.91109 -16.47682 -16.28560 -15.65806 -15.45400 -15.30705 -14.91236 -14.72805 -14.68595 -14.59974 -13.79963 -13.57739 -13.45193 -13.07986 -12.95446 -12.93265 -12.72897 -12.58081 -12.46266 -12.19873 -11.97916 -11.89854 -11.79400 -11.71235 -11.58859 -11.49652 -11.10686 -10.35682 -10.30683 -10.01960 -9.52437 -8.81370 -7.76204 -5.07814 -0.57502 0.05397 0.92383 0.97657 1.35292 1.48413 1.50161 1.56344 1.65104 2.43114 2.59135 3.25727 3.37431 3.51736 3.66674 3.82707 3.90263 3.96339 4.12722 4.24756 4.33189 4.50315 4.57406 4.69257 4.73298 4.78070 4.88675 4.90910 5.00011 5.02093 5.05561 5.17083 5.23469 5.33368 5.36790 5.51093 5.58123 5.70127 5.85263 5.93350 6.27818 6.41365 7.26999 7.54101 7.96742 8.33217 9.23423 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.003091 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.684805 B = 9056.800077 C = 9512.439329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 C 0.174 3.826 4 N -0.596 5.596 5 C -0.247 4.247 6 H 0.063 0.937 7 C -0.048 4.048 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.284 1.284 11 H -0.301 1.301 12 H -0.283 1.283 13 C 0.220 3.780 14 C -0.022 4.022 15 C -0.038 4.038 16 N -0.248 5.248 17 C 0.110 3.890 18 C -0.103 4.103 19 C -0.080 4.080 20 C -0.037 4.037 21 Cl -0.053 7.053 22 C -0.086 4.086 23 C -0.105 4.105 24 N -0.121 5.121 25 N -0.288 5.288 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.243 0.757 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.165 0.835 38 H 0.175 0.825 39 H 0.165 0.835 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -11.712 -18.990 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.049 3.951 4 N -0.316 5.316 5 C -0.377 4.377 6 H 0.081 0.919 7 C -0.243 4.243 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.211 1.211 11 H -0.228 1.228 12 H -0.209 1.209 13 C 0.091 3.909 14 C -0.163 4.163 15 C -0.187 4.187 16 N -0.036 5.036 17 C 0.018 3.982 18 C -0.124 4.124 19 C -0.099 4.099 20 C -0.064 4.064 21 Cl -0.024 7.024 22 C -0.105 4.105 23 C -0.126 4.126 24 N -0.098 5.098 25 N -0.155 5.155 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.241 0.759 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.182 0.818 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.294 -12.501 -18.271 22.382 hybrid contribution -0.287 0.450 1.071 1.197 sum -3.581 -12.051 -17.200 21.304 Atomic orbital electron populations 1.21529 0.96151 1.00141 1.00743 1.21934 0.94797 0.99572 0.99435 1.20877 0.81056 0.94900 0.98275 1.44580 1.02460 1.82683 1.01839 1.19411 0.92213 1.41263 0.84837 0.91900 1.25278 0.98465 1.01267 0.99293 1.70333 1.17810 1.42953 1.24515 0.85533 0.77660 0.78813 0.79986 1.21097 1.22849 1.20875 1.19497 0.97117 0.85290 0.89023 1.23885 0.92909 1.02107 0.97350 1.23901 1.03683 0.83793 1.07277 1.44826 1.17891 1.09013 1.31855 1.18193 0.97631 0.84366 0.97972 1.21161 0.93854 1.01310 0.96054 1.21216 1.00596 0.89246 0.98819 1.21193 0.96855 0.89552 0.98816 1.98398 1.89360 1.37299 1.77308 1.21137 0.95346 0.98885 0.95129 1.21002 1.00678 0.90574 1.00325 1.78171 1.06281 1.16090 1.09232 1.74996 1.23706 0.97377 1.19444 0.93857 0.94714 0.91903 0.94728 0.93748 0.92499 0.94529 0.94786 0.92346 0.88183 0.75914 0.81733 0.80721 0.81774 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.91 71.98 0.71 -3.71 16 2 C -0.12 -4.98 5.59 30.59 0.17 -4.81 16 3 C 0.17 7.71 4.92 86.38 0.42 8.13 16 4 N -0.60 -28.32 2.52 -706.35 -1.78 -30.10 16 5 C -0.25 -13.57 9.70 84.03 0.82 -12.76 16 6 H 0.06 3.56 7.92 -2.91 -0.02 3.54 16 7 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 8 N -0.91 -51.54 8.56 21.65 0.19 -51.36 16 9 Si 0.95 46.12 29.62 68.60 2.03 48.15 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 13 C 0.22 8.53 6.27 85.64 0.54 9.07 16 14 C -0.02 -0.88 6.41 41.61 0.27 -0.61 16 15 C -0.04 -1.20 8.88 83.37 0.74 -0.46 16 16 N -0.25 -8.04 3.56 -187.04 -0.67 -8.70 16 17 C 0.11 2.70 6.68 38.07 0.25 2.96 16 18 C -0.10 -1.77 9.46 22.38 0.21 -1.56 16 19 C -0.08 -1.08 9.82 22.28 0.22 -0.86 16 20 C -0.04 -0.55 6.32 22.34 0.14 -0.41 16 21 Cl -0.05 -0.71 28.95 -2.72 -0.08 -0.79 16 22 C -0.09 -1.42 9.82 22.27 0.22 -1.20 16 23 C -0.11 -2.36 9.62 22.38 0.22 -2.14 16 24 N -0.12 -4.87 12.41 37.02 0.46 -4.41 16 25 N -0.29 -13.01 12.39 -48.58 -0.60 -13.61 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.03 1.32 5.42 -2.39 -0.01 1.30 16 30 H 0.04 2.37 6.30 -2.39 -0.02 2.35 16 31 H 0.06 2.94 5.86 -2.38 -0.01 2.92 16 32 H 0.04 1.38 7.98 -2.38 -0.02 1.36 16 33 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 35 H 0.10 3.04 7.95 -2.39 -0.02 3.02 16 36 H 0.22 4.81 6.90 -2.91 -0.02 4.79 16 37 H 0.17 2.09 6.77 -2.91 -0.02 2.07 16 38 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.14 3.37 7.69 -2.91 -0.02 3.35 16 Total: -1.00 -69.67 347.33 5.95 -63.72 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.06 Total: 7.70 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.34 Total: -10.61 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -2.41 Total: -108.17 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -69.67 5.95 -63.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163100842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.279 kcal (2) G-P(sol) polarization free energy of solvation -69.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds