Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 H 1.08994 * 109.46696 * 54.36477 * 3 2 1 5 5 S 1.81399 * 109.47330 * 294.36439 * 3 2 1 6 6 C 1.76199 * 102.99866 * 171.29654 * 5 3 2 7 7 C 1.38979 * 120.07708 * 173.72191 * 6 5 3 8 8 C 1.38078 * 119.91363 * 179.97438 * 7 6 5 9 9 C 1.38296 * 120.08544 * 359.97438 * 8 7 6 10 10 C 1.38307 * 120.16296 * 0.27463 * 9 8 7 11 11 C 1.38087 * 120.07319 * 359.49064 * 10 9 8 12 12 C 1.50695 * 109.46875 * 174.36391 * 3 2 1 13 13 O 1.20829 * 120.00054 * 100.00146 * 12 3 2 14 14 O 1.34233 * 120.00406 * 280.00181 * 12 3 2 15 15 C 1.45197 * 117.00072 * 179.97438 * 14 12 3 16 16 C 1.53007 * 109.46921 * 179.97438 * 15 14 12 17 17 C 1.50703 * 115.54516 * 61.18281 * 16 15 14 18 18 H 1.07998 * 120.00565 * 264.79385 * 17 16 15 19 19 C 1.37886 * 119.99869 * 84.80197 * 17 16 15 20 20 N 1.31513 * 119.99753 * 2.01457 * 19 17 16 21 21 Si 1.86796 * 119.99950 * 182.01710 * 19 17 16 22 22 H 1.48495 * 109.47431 * 59.99320 * 21 19 17 23 23 H 1.48500 * 109.47230 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47049 * 299.99651 * 21 19 17 25 25 C 1.52996 * 117.50263 * 275.51817 * 16 15 14 26 26 C 1.52992 * 117.50091 * 206.85417 * 16 15 14 27 27 H 1.08994 * 109.47399 * 65.61303 * 1 2 3 28 28 H 1.08999 * 109.46992 * 185.61450 * 1 2 3 29 29 H 1.08998 * 109.46849 * 305.61224 * 1 2 3 30 30 H 1.09000 * 109.46563 * 240.00769 * 2 1 3 31 31 H 1.08991 * 109.47497 * 120.00298 * 2 1 3 32 32 H 1.07998 * 120.04258 * 359.96157 * 7 6 5 33 33 H 1.08002 * 119.95766 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.92294 * 179.97438 * 9 8 7 35 35 H 1.07998 * 119.96422 * 179.72066 * 10 9 8 36 36 H 1.07997 * 120.03545 * 180.22897 * 11 10 9 37 37 H 1.08999 * 109.47645 * 299.99839 * 15 14 12 38 38 H 1.08997 * 109.47399 * 60.00450 * 15 14 12 39 39 H 0.96999 * 119.99915 * 180.02562 * 20 19 17 40 40 H 1.08999 * 117.49641 * 359.97438 * 25 16 15 41 41 H 1.08996 * 117.50456 * 145.01889 * 25 16 15 42 42 H 1.09005 * 117.50209 * 214.98294 * 26 16 15 43 43 H 1.09001 * 117.50058 * 359.97303 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9846 0.8352 5 16 1.5764 2.2479 -1.5579 6 6 2.0053 3.9334 -1.2758 7 6 1.9145 4.8577 -2.3097 8 6 2.2510 6.1778 -2.0847 9 6 2.6773 6.5808 -0.8323 10 6 2.7737 5.6628 0.1977 11 6 2.4343 4.3419 -0.0187 12 6 3.5405 1.4448 0.1395 13 8 4.2377 1.5937 -0.8360 14 8 4.1025 1.2815 1.3475 15 6 5.5532 1.2939 1.4067 16 6 6.0063 1.0957 2.8547 17 6 5.5896 -0.2039 3.4938 18 1 4.6936 -0.2472 4.0953 19 6 6.3524 -1.3379 3.3109 20 7 7.4645 -1.2765 2.6116 21 14 5.8062 -2.9613 4.0562 22 1 4.4752 -3.3327 3.5126 23 1 6.7919 -4.0187 3.7162 24 1 5.7169 -2.8232 5.5322 25 6 6.0717 2.3343 3.7504 26 6 7.3630 1.6775 3.2564 27 1 -0.3634 0.4243 -0.9359 28 1 -0.3633 -1.0227 0.1005 29 1 -0.3633 0.5984 0.8355 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.5815 4.5437 -3.2879 33 1 2.1803 6.8967 -2.8875 34 1 2.9402 7.6140 -0.6593 35 1 3.1113 5.9801 1.1732 36 1 2.5063 3.6263 0.7870 37 1 5.9491 0.4883 0.7883 38 1 5.9238 2.2505 1.0383 39 1 8.0010 -2.0742 2.4826 40 1 5.7924 3.2906 3.3080 41 1 5.8139 2.2092 4.8020 42 1 7.9543 1.1204 3.9832 43 1 7.9332 2.2011 2.4890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174740923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = -41.409356 kcal Electronic energy + Delta-G solvation = -24683.965784 eV Core-core repulsion = 21207.140055 eV Total energy + Delta-G solvation = -3476.825729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98360 -38.93543 -36.91163 -35.32802 -34.85738 -31.99238 -31.24301 -31.00810 -28.69521 -26.62209 -25.23525 -23.07157 -22.74848 -22.05746 -21.23395 -20.49903 -19.32238 -17.82696 -17.42098 -16.76068 -16.29169 -15.83054 -15.57366 -15.22642 -15.00492 -14.65679 -14.38208 -13.95112 -13.64969 -13.26489 -13.19524 -13.06810 -12.95417 -12.51915 -12.12181 -11.91466 -11.76455 -11.62620 -11.35482 -11.28847 -10.97741 -10.95607 -10.90919 -10.59466 -10.32851 -10.29554 -10.06307 -9.93622 -9.80112 -9.55206 -9.06953 -8.96105 -8.49485 -8.24519 -7.41310 -6.09771 -4.16422 1.09204 1.28211 1.33196 2.14458 2.59288 3.20575 3.27155 3.32428 3.34343 3.63897 4.35322 4.56580 4.69302 4.79509 4.85534 4.96749 5.01445 5.19337 5.22479 5.26213 5.30876 5.41856 5.42788 5.61059 5.64639 5.88376 5.90448 5.91424 5.95379 6.16767 6.17119 6.17217 6.25823 6.28330 6.40804 6.44667 6.59201 6.68272 6.81021 7.00221 7.12327 7.29476 7.45102 7.82158 8.23757 8.36119 8.84971 9.49644 10.99109 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.004107 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.794365 B = 6815.958261 C = 8125.263625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.079 4.079 4 H 0.123 0.877 5 S -0.053 6.053 6 C -0.084 4.084 7 C -0.102 4.102 8 C -0.103 4.103 9 C -0.128 4.128 10 C -0.096 4.096 11 C -0.132 4.132 12 C 0.449 3.551 13 O -0.495 6.495 14 O -0.329 6.329 15 C 0.117 3.883 16 C 0.035 3.965 17 C -0.489 4.489 18 H 0.062 0.938 19 C 0.069 3.931 20 N -0.882 5.882 21 Si 0.893 3.107 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.207 4.207 26 C -0.140 4.140 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 10.286 -6.793 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.209 4.209 4 H 0.141 0.859 5 S 0.194 5.806 6 C -0.197 4.197 7 C -0.126 4.126 8 C -0.123 4.123 9 C -0.149 4.149 10 C -0.116 4.116 11 C -0.155 4.155 12 C 0.287 3.713 13 O -0.383 6.383 14 O -0.244 6.244 15 C 0.044 3.956 16 C 0.035 3.965 17 C -0.527 4.527 18 H 0.080 0.920 19 C -0.134 4.134 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.244 4.244 26 C -0.177 4.177 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.966 9.545 -8.091 18.019 hybrid contribution 0.703 -0.274 1.408 1.597 sum -12.262 9.270 -6.684 16.762 Atomic orbital electron populations 1.21835 0.93819 1.02486 1.02727 1.21368 0.97307 0.90546 1.04957 1.23570 0.93351 1.03248 1.00757 0.85918 1.85222 1.75622 0.98331 1.21451 1.21855 1.03430 0.97559 0.96831 1.20716 1.01422 0.92714 0.97712 1.21056 0.98704 0.95336 0.97194 1.21168 1.00806 0.99637 0.93292 1.21083 0.98326 0.92704 0.99452 1.21221 1.01397 0.97275 0.95634 1.23172 0.91072 0.74153 0.82872 1.90684 1.63661 1.44551 1.39428 1.86526 1.26886 1.80961 1.30056 1.22926 0.73222 0.99389 1.00063 1.18770 0.96675 0.92461 0.88609 1.20320 1.09526 0.91524 1.31293 0.91966 1.25015 0.94623 0.98909 0.94891 1.69984 1.13370 1.29133 1.39322 0.86651 0.78526 0.83130 0.79693 1.20093 1.21246 1.20122 1.23025 1.04550 0.96687 1.00145 1.22519 0.90553 1.02276 1.02364 0.91718 0.91720 0.92047 0.90263 0.88387 0.85571 0.85619 0.85850 0.85575 0.86086 0.90833 0.94236 0.92825 0.91683 0.90048 0.89150 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.65 37.16 0.36 -1.15 16 2 C -0.10 -1.34 5.38 -26.73 -0.14 -1.48 16 3 C -0.08 -1.16 1.96 -27.88 -0.05 -1.22 16 4 H 0.12 1.61 6.92 -51.93 -0.36 1.25 16 5 S -0.05 -0.73 19.52 -107.50 -2.10 -2.83 16 6 C -0.08 -1.19 6.04 -39.04 -0.24 -1.43 16 7 C -0.10 -1.26 9.79 -39.37 -0.39 -1.65 16 8 C -0.10 -1.11 10.04 -39.62 -0.40 -1.51 16 9 C -0.13 -1.40 10.04 -39.53 -0.40 -1.79 16 10 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 11 C -0.13 -1.88 8.83 -39.37 -0.35 -2.23 16 12 C 0.45 8.60 5.59 36.00 0.20 8.80 16 13 O -0.50 -10.75 15.79 -18.75 -0.30 -11.05 16 14 O -0.33 -7.07 10.09 -39.27 -0.40 -7.47 16 15 C 0.12 2.76 5.30 37.16 0.20 2.95 16 16 C 0.04 0.87 1.69 -155.66 -0.26 0.60 16 17 C -0.49 -13.06 8.71 -34.44 -0.30 -13.36 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 20 N -0.88 -24.58 12.72 55.43 0.71 -23.87 16 21 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.21 -4.44 9.95 -26.70 -0.27 -4.71 16 26 C -0.14 -3.22 9.24 -26.70 -0.25 -3.47 16 27 H 0.06 0.62 7.36 -51.93 -0.38 0.24 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.78 5.14 -52.49 -0.27 1.51 16 37 H 0.07 1.91 8.13 -51.93 -0.42 1.48 16 38 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -30.08 375.79 -10.69 -40.77 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.47 Total: 4.54 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.77 Total: -21.47 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.71 Total: -23.87 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.69 Total: -18.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.10 Total: -2.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.08 -10.69 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174740923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.640 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds