Wall clock time and date at job start Tue Mar 31 2020 13:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47109 * 2 1 4 4 C 1.50699 * 109.47520 * 120.00298 * 2 1 3 5 5 H 1.07998 * 119.99957 * 119.99854 * 4 2 1 6 6 C 1.37874 * 119.99713 * 299.99903 * 4 2 1 7 7 N 1.31509 * 120.00373 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99655 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46965 * 90.00204 * 8 6 4 10 10 H 1.48501 * 109.46894 * 209.99988 * 8 6 4 11 11 H 1.48500 * 109.47337 * 330.00024 * 8 6 4 12 12 N 1.46905 * 109.46826 * 240.00276 * 2 1 3 13 13 C 1.46901 * 111.00005 * 183.95039 * 12 2 1 14 14 C 1.39091 * 110.99980 * 59.99682 * 12 2 1 15 15 C 1.39259 * 119.90226 * 59.99945 * 14 12 2 16 16 C 1.36553 * 120.21982 * 179.97438 * 15 14 12 17 17 C 1.40053 * 120.02969 * 359.97438 * 16 15 14 18 18 C 1.46879 * 120.09539 * 180.02562 * 17 16 15 19 19 C 1.35166 * 119.99791 * 311.59132 * 18 17 16 20 20 C 1.41709 * 120.00272 * 348.31039 * 19 18 17 21 21 O 1.21661 * 119.99869 * 353.36469 * 20 19 18 22 22 O 1.34939 * 120.00081 * 173.37062 * 20 19 18 23 23 C 1.40052 * 119.80863 * 0.02562 * 17 16 15 24 24 C 1.37614 * 119.78210 * 0.25065 * 23 17 16 25 25 N 1.48022 * 120.01913 * 179.72471 * 24 23 17 26 26 O 1.21798 * 119.99640 * 359.97438 * 25 24 23 27 27 O 1.21803 * 119.99936 * 180.02562 * 25 24 23 28 28 H 1.08991 * 109.47271 * 60.00042 * 1 2 3 29 29 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46569 * 299.99535 * 1 2 3 31 31 H 0.96997 * 120.00296 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47202 * 296.04647 * 13 12 2 33 33 H 1.09000 * 109.46805 * 56.04541 * 13 12 2 34 34 H 1.09000 * 109.47115 * 176.04483 * 13 12 2 35 35 H 1.07999 * 119.88845 * 359.95691 * 15 14 12 36 36 H 1.08003 * 119.98145 * 179.97438 * 16 15 14 37 37 H 1.07997 * 119.99930 * 131.58514 * 18 17 16 38 38 H 1.08003 * 119.99430 * 168.30532 * 19 18 17 39 39 H 0.96696 * 114.00072 * 179.97438 * 22 20 19 40 40 H 1.08007 * 120.10512 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3217 -1.1205 4.0078 9 1 3.6299 -0.5461 4.4122 10 1 1.3434 -0.9495 5.1120 11 1 2.4861 -2.5664 3.7118 12 7 2.0196 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1872 14 6 1.5736 -0.0617 -2.3562 15 6 1.9147 1.2665 -2.5983 16 6 1.4808 1.8920 -3.7319 17 6 0.6903 1.1979 -4.6565 18 6 0.2232 1.8690 -5.8766 19 6 -0.3498 3.0907 -5.7988 20 6 -0.7262 3.6178 -4.5384 21 8 -0.6459 2.9257 -3.5410 22 8 -1.1737 4.8874 -4.4444 23 6 0.3464 -0.1380 -4.4142 24 6 0.7833 -0.7589 -3.2665 25 7 0.4179 -2.1688 -3.0022 26 8 -0.2700 -2.7795 -3.8006 27 8 0.8043 -2.7179 -1.9860 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 0.7089 1.1611 3.4844 32 1 3.9192 0.2044 -1.2302 33 1 3.8070 -1.2915 -0.2721 34 1 3.8163 -1.3721 -2.0502 35 1 2.5243 1.8039 -1.8869 36 1 1.7473 2.9223 -3.9156 37 1 0.3377 1.3863 -6.8359 38 1 -0.5208 3.6651 -6.6973 39 1 -1.4063 5.1569 -3.5453 40 1 -0.2633 -0.6777 -5.1238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214001583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:15 Heat of formation + Delta-G solvation = -13.083261 kcal Electronic energy + Delta-G solvation = -27769.869599 eV Core-core repulsion = 23747.978968 eV Total energy + Delta-G solvation = -4021.890631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54412 -40.71873 -39.52147 -37.27825 -36.09473 -35.63272 -34.03108 -32.75702 -31.67874 -29.77861 -29.13039 -26.31297 -25.67473 -24.79295 -24.02106 -22.61449 -21.87025 -20.07744 -19.87265 -18.61191 -18.08591 -17.85866 -16.80608 -16.68863 -16.46744 -15.99253 -15.74831 -15.27095 -15.01145 -14.44231 -14.36676 -14.00522 -13.85067 -13.22537 -13.11734 -12.62542 -12.49582 -12.17570 -11.90788 -11.70676 -11.63963 -11.10499 -10.89967 -10.81304 -10.75146 -10.69497 -10.48880 -10.35594 -10.28516 -10.22667 -10.13875 -10.00469 -9.24137 -9.03492 -8.49738 -8.35578 -7.54817 -6.06424 -4.11243 0.16218 0.51796 1.30812 1.96891 2.08587 2.77880 3.14863 3.29831 3.37255 3.42693 3.52784 4.20537 4.30433 4.46922 4.67364 4.80367 4.92672 5.01514 5.15829 5.25394 5.36260 5.44570 5.63137 5.77359 5.85617 5.97790 6.00590 6.17215 6.24194 6.27351 6.47978 6.60111 6.74093 6.94960 6.96426 7.09006 7.31252 7.60654 7.69990 7.76186 7.95216 8.18317 8.41931 8.44664 8.93160 9.53577 11.00597 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004570 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.704954 B = 6125.523377 C = 7329.090008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.224 3.776 3 H 0.006 0.994 4 C -0.503 4.503 5 H 0.070 0.930 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.505 5.505 13 C 0.045 3.955 14 C 0.216 3.784 15 C -0.161 4.161 16 C -0.002 4.002 17 C -0.104 4.104 18 C 0.018 3.982 19 C -0.209 4.209 20 C 0.497 3.503 21 O -0.494 6.494 22 O -0.513 6.513 23 C -0.034 4.034 24 C -0.045 4.045 25 N 0.031 4.969 26 O -0.228 6.228 27 O -0.078 6.078 28 H 0.002 0.998 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.261 0.739 32 H 0.020 0.980 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.410 0.590 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 7.112 -17.587 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.121 3.879 3 H 0.024 0.976 4 C -0.541 4.541 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.228 5.228 13 C -0.101 4.101 14 C 0.118 3.882 15 C -0.182 4.182 16 C -0.021 4.021 17 C -0.105 4.105 18 C 0.000 4.000 19 C -0.228 4.228 20 C 0.343 3.657 21 O -0.383 6.383 22 O -0.324 6.324 23 C -0.054 4.054 24 C -0.130 4.130 25 N 0.552 4.448 26 O -0.424 6.424 27 O -0.314 6.314 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.267 0.733 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.341 7.106 -17.813 19.181 hybrid contribution 0.105 0.433 1.465 1.531 sum 0.445 7.538 -16.348 18.008 Atomic orbital electron populations 1.21848 0.97397 1.00058 1.00041 1.19417 0.92564 0.91701 0.84222 0.97611 1.21084 1.31406 1.12526 0.89122 0.91184 1.24919 0.95035 0.95046 0.99095 1.69891 1.36651 1.23082 1.23627 0.86454 0.78293 0.80298 0.82174 1.20809 1.21275 1.19511 1.60030 1.10835 1.51691 1.00221 1.22279 0.85433 0.99446 1.02976 1.19049 0.88532 0.90098 0.90476 1.21499 1.03289 0.94914 0.98459 1.20988 0.91576 0.98116 0.91413 1.18640 1.02429 0.92863 0.96528 1.22523 0.88325 0.91732 0.97440 1.21386 1.07108 0.97703 0.96610 1.19897 0.75362 0.79979 0.90484 1.91152 1.49587 1.58693 1.38902 1.85042 1.77886 1.30591 1.38839 1.20820 0.96298 0.93289 0.94943 1.20980 1.08729 0.83614 0.99701 1.43323 0.98846 1.02515 1.00081 1.94443 1.38082 1.65514 1.44398 1.94685 1.53549 1.68908 1.14269 0.97928 0.94218 0.89130 0.92873 0.96154 0.88676 0.93547 0.83979 0.85791 0.83170 0.83501 0.73304 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.85 37.16 0.33 -3.17 16 2 C 0.22 5.58 1.83 -68.86 -0.13 5.45 16 3 H 0.01 0.17 7.09 -51.93 -0.37 -0.20 16 4 C -0.50 -13.47 7.88 -34.44 -0.27 -13.74 16 5 H 0.07 1.86 6.41 -52.49 -0.34 1.52 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 N -0.51 -10.92 2.46 -172.64 -0.43 -11.34 16 13 C 0.04 0.84 9.10 60.07 0.55 1.39 16 14 C 0.22 4.15 3.30 -83.81 -0.28 3.88 16 15 C -0.16 -2.69 8.48 -39.81 -0.34 -3.02 16 16 C 0.00 -0.03 6.78 -39.51 -0.27 -0.29 16 17 C -0.10 -1.31 4.27 -105.04 -0.45 -1.75 16 18 C 0.02 0.15 9.76 -37.18 -0.36 -0.21 16 19 C -0.21 -1.71 9.86 -39.35 -0.39 -2.10 16 20 C 0.50 5.47 7.29 32.06 0.23 5.70 16 21 O -0.49 -7.49 13.11 -19.39 -0.25 -7.75 16 22 O -0.51 -4.55 13.54 -41.15 -0.56 -5.11 16 23 C -0.03 -0.50 9.30 -39.13 -0.36 -0.87 16 24 C -0.05 -0.85 6.87 -79.79 -0.55 -1.39 16 25 N 0.03 0.65 4.45 34.04 0.15 0.80 16 26 O -0.23 -4.58 18.45 -29.46 -0.54 -5.12 16 27 O -0.08 -1.78 17.10 -29.46 -0.50 -2.28 16 28 H 0.00 0.04 7.22 -51.93 -0.37 -0.33 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.02 0.35 7.31 -51.93 -0.38 -0.03 16 33 H 0.09 1.88 6.10 -51.93 -0.32 1.57 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.14 2.37 6.98 -52.49 -0.37 2.00 16 36 H 0.12 1.42 7.49 -52.48 -0.39 1.02 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.41 2.41 8.98 45.56 0.41 2.82 16 40 H 0.15 1.88 7.61 -52.48 -0.40 1.48 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -33.27 342.12 -7.41 -40.68 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.67 Total: 1.99 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.38 Total: -8.58 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.35 Total: -35.10 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.86 Total: -20.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.27 -7.41 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214001583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.598 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds