Wall clock time and date at job start Tue Mar 31 2020 13:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47109 * 2 1 4 4 C 1.50699 * 109.47520 * 120.00298 * 2 1 3 5 5 H 1.07998 * 119.99957 * 119.99854 * 4 2 1 6 6 C 1.37874 * 119.99713 * 299.99903 * 4 2 1 7 7 N 1.31509 * 120.00373 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99655 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46965 * 90.00204 * 8 6 4 10 10 H 1.48501 * 109.46894 * 209.99988 * 8 6 4 11 11 H 1.48500 * 109.47337 * 330.00024 * 8 6 4 12 12 N 1.46905 * 109.46826 * 240.00276 * 2 1 3 13 13 C 1.46901 * 111.00005 * 183.95039 * 12 2 1 14 14 C 1.39091 * 110.99980 * 59.99682 * 12 2 1 15 15 C 1.39259 * 119.90226 * 59.99945 * 14 12 2 16 16 C 1.36553 * 120.21982 * 179.97438 * 15 14 12 17 17 C 1.40053 * 120.02969 * 359.97438 * 16 15 14 18 18 C 1.46879 * 120.09539 * 180.02562 * 17 16 15 19 19 C 1.35166 * 119.99791 * 311.59132 * 18 17 16 20 20 C 1.41709 * 120.00272 * 348.31039 * 19 18 17 21 21 O 1.21661 * 119.99869 * 353.36469 * 20 19 18 22 22 O 1.34939 * 120.00081 * 173.37062 * 20 19 18 23 23 C 1.40052 * 119.80863 * 0.02562 * 17 16 15 24 24 C 1.37614 * 119.78210 * 0.25065 * 23 17 16 25 25 N 1.48022 * 120.01913 * 179.72471 * 24 23 17 26 26 O 1.21798 * 119.99640 * 359.97438 * 25 24 23 27 27 O 1.21803 * 119.99936 * 180.02562 * 25 24 23 28 28 H 1.08991 * 109.47271 * 60.00042 * 1 2 3 29 29 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46569 * 299.99535 * 1 2 3 31 31 H 0.96997 * 120.00296 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47202 * 296.04647 * 13 12 2 33 33 H 1.09000 * 109.46805 * 56.04541 * 13 12 2 34 34 H 1.09000 * 109.47115 * 176.04483 * 13 12 2 35 35 H 1.07999 * 119.88845 * 359.95691 * 15 14 12 36 36 H 1.08003 * 119.98145 * 179.97438 * 16 15 14 37 37 H 1.07997 * 119.99930 * 131.58514 * 18 17 16 38 38 H 1.08003 * 119.99430 * 168.30532 * 19 18 17 39 39 H 0.96696 * 114.00072 * 179.97438 * 22 20 19 40 40 H 1.08007 * 120.10512 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3217 -1.1205 4.0078 9 1 3.6299 -0.5461 4.4122 10 1 1.3434 -0.9495 5.1120 11 1 2.4861 -2.5664 3.7118 12 7 2.0196 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1872 14 6 1.5736 -0.0617 -2.3562 15 6 1.9147 1.2665 -2.5983 16 6 1.4808 1.8920 -3.7319 17 6 0.6903 1.1979 -4.6565 18 6 0.2232 1.8690 -5.8766 19 6 -0.3498 3.0907 -5.7988 20 6 -0.7262 3.6178 -4.5384 21 8 -0.6459 2.9257 -3.5410 22 8 -1.1737 4.8874 -4.4444 23 6 0.3464 -0.1380 -4.4142 24 6 0.7833 -0.7589 -3.2665 25 7 0.4179 -2.1688 -3.0022 26 8 -0.2700 -2.7795 -3.8006 27 8 0.8043 -2.7179 -1.9860 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 0.7089 1.1611 3.4844 32 1 3.9192 0.2044 -1.2302 33 1 3.8070 -1.2915 -0.2721 34 1 3.8163 -1.3721 -2.0502 35 1 2.5243 1.8039 -1.8869 36 1 1.7473 2.9223 -3.9156 37 1 0.3377 1.3863 -6.8359 38 1 -0.5208 3.6651 -6.6973 39 1 -1.4063 5.1569 -3.5453 40 1 -0.2633 -0.6777 -5.1238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214001583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:14 Heat of formation + Delta-G solvation = -33.763046 kcal Electronic energy + Delta-G solvation = -27770.766342 eV Core-core repulsion = 23747.978968 eV Total energy + Delta-G solvation = -4022.787374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.04758 -41.69459 -40.81203 -38.59112 -37.26988 -37.01479 -35.31672 -34.38988 -32.94028 -31.47342 -30.60972 -27.92442 -27.08455 -26.43876 -25.31529 -24.04158 -23.18375 -21.66860 -21.02103 -19.57611 -19.48463 -18.98603 -18.41812 -18.35631 -17.71393 -17.38083 -16.91404 -16.81214 -16.36249 -15.78330 -15.54355 -15.18905 -15.03801 -14.82152 -14.31147 -14.03702 -13.94300 -13.56449 -13.25825 -13.04869 -12.97529 -12.72786 -12.61528 -12.53427 -12.43926 -12.25926 -12.12803 -12.10517 -11.97273 -11.95897 -11.65422 -11.08379 -10.99447 -10.58366 -10.45601 -9.48875 -9.21880 -8.15701 -6.27057 -1.06213 -0.56516 0.20708 0.58213 0.64938 1.41477 1.44357 1.55392 1.99419 2.31513 2.41296 2.48924 2.87813 3.14713 3.35788 3.53580 3.71681 3.89322 3.98297 4.26363 4.37916 4.44660 4.51811 4.52865 4.57931 4.64674 4.78681 4.87751 4.89429 4.98157 5.00974 5.12054 5.27588 5.29696 5.34219 5.52089 5.57032 5.61646 5.72562 6.09147 6.15372 6.61007 6.81148 6.83460 6.94366 7.41413 8.91043 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004570 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.704954 B = 6125.523377 C = 7329.090008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.236 3.764 3 H -0.017 1.017 4 C -0.517 4.517 5 H 0.066 0.934 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.515 5.515 13 C 0.048 3.952 14 C 0.181 3.819 15 C -0.171 4.171 16 C 0.009 3.991 17 C -0.081 4.081 18 C 0.020 3.980 19 C -0.197 4.197 20 C 0.495 3.505 21 O -0.547 6.547 22 O -0.507 6.507 23 C -0.036 4.036 24 C -0.063 4.063 25 N 0.036 4.964 26 O -0.197 6.197 27 O -0.155 6.155 28 H 0.005 0.995 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.263 0.737 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.201 0.799 38 H 0.188 0.812 39 H 0.421 0.579 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 8.578 -20.886 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 H 0.001 0.999 4 C -0.555 4.555 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.237 5.237 13 C -0.098 4.098 14 C 0.084 3.916 15 C -0.192 4.192 16 C -0.009 4.009 17 C -0.082 4.082 18 C 0.003 3.997 19 C -0.215 4.215 20 C 0.343 3.657 21 O -0.440 6.440 22 O -0.318 6.318 23 C -0.056 4.056 24 C -0.148 4.148 25 N 0.551 4.449 26 O -0.405 6.405 27 O -0.373 6.373 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.218 0.782 38 H 0.205 0.795 39 H 0.280 0.720 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.269 8.573 -21.005 22.689 hybrid contribution 0.015 0.190 2.212 2.220 sum 0.284 8.762 -18.793 20.737 Atomic orbital electron populations 1.21582 0.98406 0.98299 0.98886 1.19049 0.91564 0.90554 0.85668 0.99947 1.21354 1.31386 1.12458 0.90302 0.91635 1.25698 0.95173 0.95690 1.01900 1.70010 1.37611 1.24291 1.24226 0.85471 0.78079 0.79082 0.78525 1.19601 1.21102 1.19450 1.59760 1.12015 1.51870 1.00076 1.22248 0.84504 1.00092 1.02921 1.19082 0.90782 0.91383 0.90354 1.21449 1.03943 0.93999 0.99784 1.21316 0.90345 0.99058 0.90213 1.19127 0.99928 0.91801 0.97383 1.22866 0.88331 0.91447 0.97095 1.21751 1.05913 0.97394 0.96468 1.20547 0.74225 0.79977 0.90945 1.91156 1.52035 1.59964 1.40869 1.85024 1.77195 1.29651 1.39954 1.21202 0.96172 0.94283 0.93919 1.21215 1.10000 0.82236 1.01388 1.43666 0.98227 1.03477 0.99558 1.94373 1.36503 1.66085 1.43535 1.94702 1.56537 1.70238 1.15801 0.97636 0.96051 0.91406 0.92825 0.95175 0.90318 0.91678 0.84889 0.83150 0.78237 0.79528 0.71950 0.80802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.20 8.85 71.98 0.64 -5.56 16 2 C 0.24 12.41 1.83 44.17 0.08 12.49 16 3 H -0.02 -0.94 7.09 -2.39 -0.02 -0.96 16 4 C -0.52 -28.92 7.88 25.60 0.20 -28.72 16 5 H 0.07 3.65 6.41 -2.91 -0.02 3.63 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.52 -23.38 2.46 -700.11 -1.73 -25.11 16 13 C 0.05 1.90 9.10 127.69 1.16 3.06 16 14 C 0.18 7.14 3.30 38.48 0.13 7.27 16 15 C -0.17 -5.75 8.48 22.12 0.19 -5.56 16 16 C 0.01 0.24 6.78 22.32 0.15 0.39 16 17 C -0.08 -1.77 4.27 -20.14 -0.09 -1.86 16 18 C 0.02 0.22 9.76 23.83 0.23 0.45 16 19 C -0.20 -2.13 9.86 22.42 0.22 -1.91 16 20 C 0.49 9.20 7.29 68.68 0.50 9.70 16 21 O -0.55 -15.58 13.11 19.31 0.25 -15.33 16 22 O -0.51 -7.39 13.54 -58.55 -0.79 -8.19 16 23 C -0.04 -0.99 9.30 22.56 0.21 -0.78 16 24 C -0.06 -2.35 6.87 36.47 0.25 -2.10 16 25 N 0.04 1.51 4.45 -46.23 -0.21 1.30 16 26 O -0.20 -7.76 18.45 18.89 0.35 -7.41 16 27 O -0.15 -7.47 17.10 18.88 0.32 -7.15 16 28 H 0.00 0.25 7.22 -2.39 -0.02 0.23 16 29 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 3.97 6.07 -2.38 -0.01 3.96 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.03 1.09 7.31 -2.39 -0.02 1.08 16 33 H 0.08 3.30 6.10 -2.39 -0.01 3.28 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.13 4.60 6.98 -2.91 -0.02 4.58 16 36 H 0.15 2.98 7.49 -2.91 -0.02 2.96 16 37 H 0.20 0.32 8.06 -2.91 -0.02 0.30 16 38 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.42 4.08 8.98 -74.06 -0.67 3.42 16 40 H 0.17 3.74 7.61 -2.91 -0.02 3.72 16 Total: -1.00 -77.18 342.12 5.23 -71.95 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.44 Total: 8.87 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.32 Total: -11.90 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.69 Total: -77.26 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: 0.13 Total: -38.08 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -77.18 5.23 -71.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214001583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.184 kcal (2) G-P(sol) polarization free energy of solvation -77.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds