Wall clock time and date at job start Tue Mar 31 2020 13:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46908 * 109.46847 * 2 1 4 4 C 1.46897 * 110.99709 * 193.95727 * 3 2 1 5 5 C 1.50699 * 109.47396 * 66.04600 * 4 3 2 6 6 H 1.08000 * 119.99765 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00155 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99946 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46665 * 59.99971 * 9 7 5 11 11 H 1.48498 * 109.46998 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46962 * 299.99904 * 9 7 5 13 13 C 1.39087 * 110.99933 * 69.99950 * 3 2 1 14 14 C 1.39258 * 119.90394 * 63.95473 * 13 3 2 15 15 C 1.36555 * 120.22474 * 180.24897 * 14 13 3 16 16 C 1.40051 * 120.02386 * 359.50131 * 15 14 13 17 17 C 1.46879 * 120.09465 * 180.22928 * 16 15 14 18 18 C 1.35160 * 119.99591 * 44.05804 * 17 16 15 19 19 C 1.41705 * 120.00369 * 10.57302 * 18 17 16 20 20 O 1.21656 * 119.99967 * 7.29285 * 19 18 17 21 21 O 1.34943 * 119.99975 * 187.29428 * 19 18 17 22 22 C 1.40055 * 119.81166 * 0.47220 * 16 15 14 23 23 C 1.37611 * 119.77667 * 359.78120 * 22 16 15 24 24 N 1.48025 * 120.01543 * 180.02562 * 23 22 16 25 25 O 1.21807 * 120.00017 * 359.97438 * 24 23 22 26 26 O 1.21799 * 120.00143 * 179.97438 * 24 23 22 27 27 H 1.09000 * 109.47125 * 300.00055 * 1 2 3 28 28 H 1.09002 * 109.47691 * 60.00096 * 1 2 3 29 29 H 1.08995 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47069 * 240.00613 * 2 1 3 31 31 H 1.08998 * 109.47296 * 119.99605 * 2 1 3 32 32 H 1.09001 * 109.47120 * 186.04407 * 4 3 2 33 33 H 1.09001 * 109.47250 * 306.04734 * 4 3 2 34 34 H 0.97006 * 119.99846 * 179.97438 * 8 7 5 35 35 H 1.08007 * 119.88713 * 359.97438 * 14 13 3 36 36 H 1.07996 * 119.98070 * 179.74844 * 15 14 13 37 37 H 1.07995 * 120.00229 * 224.06421 * 17 16 15 38 38 H 1.08004 * 119.99536 * 190.56795 * 18 17 16 39 39 H 0.96703 * 114.00047 * 179.97438 * 21 19 18 40 40 H 1.07998 * 120.10791 * 179.75442 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4499 1.4378 -0.3308 5 6 3.6534 0.9856 -1.7539 6 1 2.8051 0.6883 -2.3525 7 6 4.9225 0.9513 -2.2915 8 7 5.9555 1.3138 -1.5626 9 14 5.1749 0.3901 -4.0553 10 1 4.4211 1.2832 -4.9715 11 1 6.6207 0.4447 -4.3900 12 1 4.6836 -1.0031 -4.2065 13 6 1.7670 2.0030 1.2202 14 6 2.3756 1.5269 2.3787 15 6 2.1283 2.1255 3.5809 16 6 1.2683 3.2286 3.6507 17 6 1.0051 3.8767 4.9423 18 6 2.0247 4.1238 5.7945 19 6 3.3646 3.9678 5.3605 20 8 3.6021 3.7416 4.1890 21 8 4.3771 4.0702 6.2467 22 6 0.6559 3.7088 2.4863 23 6 0.9067 3.0964 1.2798 24 7 0.2627 3.5999 0.0458 25 8 -0.4898 4.5563 0.0981 26 8 0.4852 3.0579 -1.0220 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8112 2.4601 -0.2193 33 1 4.0027 0.7816 0.3415 34 1 6.8485 1.2893 -1.9408 35 1 3.0421 0.6786 2.3269 36 1 2.5993 1.7504 4.4775 37 1 -0.0029 4.1557 5.2110 38 1 1.8181 4.4402 6.8063 39 1 5.2541 3.9487 5.8577 40 1 -0.0113 4.5567 2.5353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218080811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:44 Heat of formation + Delta-G solvation = -17.795715 kcal Electronic energy + Delta-G solvation = -27514.515992 eV Core-core repulsion = 23492.421013 eV Total energy + Delta-G solvation = -4022.094979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55572 -40.79382 -39.51682 -37.29530 -36.11002 -35.61791 -33.95570 -32.66210 -31.70271 -30.61975 -29.33956 -26.77832 -25.74129 -24.78272 -23.06338 -22.56482 -22.01963 -20.41871 -19.96960 -18.63430 -18.10035 -17.87264 -16.89539 -16.76103 -16.55472 -15.97538 -15.75761 -15.28932 -14.99519 -14.47369 -14.37494 -14.13787 -13.98851 -13.39447 -13.17700 -12.94612 -12.45937 -12.23858 -12.12398 -11.80942 -11.68868 -11.36932 -11.08321 -10.84583 -10.78699 -10.73670 -10.61152 -10.47814 -10.45691 -10.32426 -10.23562 -9.97413 -9.37570 -9.16526 -8.48726 -8.35955 -7.61220 -6.06605 -4.08186 0.09834 0.51627 1.31615 1.97783 2.07808 2.75782 3.12375 3.34863 3.38779 3.43054 3.52424 4.17813 4.28829 4.47751 4.64351 4.77837 4.90168 4.99714 5.13352 5.27585 5.31581 5.40491 5.56657 5.61273 5.77648 5.78062 5.86254 5.93275 6.08511 6.17716 6.21461 6.25241 6.47353 6.58342 6.64727 7.01155 7.08185 7.16283 7.66621 7.72225 7.84339 8.02265 8.39273 8.43270 8.98499 9.55833 11.04267 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.004518 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.528817 B = 6196.357300 C = 7425.754762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.065 3.935 3 N -0.503 5.503 4 C 0.204 3.796 5 C -0.505 4.505 6 H 0.071 0.929 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.216 3.784 14 C -0.166 4.166 15 C 0.012 3.988 16 C -0.112 4.112 17 C 0.021 3.979 18 C -0.213 4.213 19 C 0.499 3.501 20 O -0.495 6.495 21 O -0.512 6.512 22 C -0.031 4.031 23 C -0.049 4.049 24 N 0.031 4.969 25 O -0.229 6.229 26 O -0.075 6.075 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.263 0.737 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.410 0.590 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 1.859 17.568 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.060 4.060 3 N -0.225 5.225 4 C 0.082 3.918 5 C -0.544 4.544 6 H 0.089 0.911 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.730 3.270 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.118 3.882 14 C -0.187 4.187 15 C -0.007 4.007 16 C -0.113 4.113 17 C 0.003 3.997 18 C -0.232 4.232 19 C 0.345 3.655 20 O -0.386 6.386 21 O -0.323 6.323 22 C -0.051 4.051 23 C -0.134 4.134 24 N 0.552 4.448 25 O -0.425 6.425 26 O -0.312 6.312 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.072 0.928 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.267 0.733 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.917 2.013 17.719 19.938 hybrid contribution 1.317 -0.417 -0.682 1.540 sum -7.600 1.597 17.038 18.724 Atomic orbital electron populations 1.21844 0.96244 1.00773 1.01799 1.22087 0.94380 0.87528 1.02054 1.60000 1.23240 1.17066 1.22209 1.19832 0.77493 0.97370 0.97069 1.21045 0.92903 1.43860 0.96566 0.91097 1.24980 0.95812 0.95463 0.98211 1.69959 0.98995 1.48117 1.36802 0.86488 0.76822 0.79230 0.84496 1.19880 1.21465 1.20179 1.19093 0.87723 0.89831 0.91532 1.21496 1.02231 1.02969 0.91995 1.20982 0.90109 0.91625 0.98005 1.18652 1.01357 0.98655 0.92597 1.22521 0.99195 0.88032 0.89985 1.21358 0.89611 1.09999 1.02204 1.19910 0.87524 0.74119 0.83994 1.91135 1.85515 1.43673 1.18228 1.85049 1.19792 1.84694 1.42718 1.20845 0.96811 0.98038 0.89368 1.20971 1.05377 1.01694 0.85372 1.43314 0.99156 0.99579 1.02724 1.94447 1.34793 1.19997 1.93273 1.94686 1.63460 1.57572 1.15492 0.94707 0.91158 0.92671 0.88068 0.95592 0.95183 0.98285 0.92792 0.84001 0.85859 0.83183 0.83477 0.73270 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.94 37.16 0.37 -2.02 16 2 C 0.07 1.21 5.44 -3.82 -0.02 1.19 16 3 N -0.50 -10.80 2.31 -172.44 -0.40 -11.20 16 4 C 0.20 5.25 4.29 -4.98 -0.02 5.23 16 5 C -0.51 -13.94 8.31 -34.44 -0.29 -14.23 16 6 H 0.07 1.93 7.23 -52.49 -0.38 1.55 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.22 4.12 3.72 -83.81 -0.31 3.81 16 14 C -0.17 -2.75 8.44 -39.81 -0.34 -3.09 16 15 C 0.01 0.16 6.56 -39.51 -0.26 -0.10 16 16 C -0.11 -1.39 4.49 -105.04 -0.47 -1.87 16 17 C 0.02 0.17 9.80 -37.18 -0.36 -0.19 16 18 C -0.21 -1.71 9.85 -39.35 -0.39 -2.10 16 19 C 0.50 5.36 7.11 32.06 0.23 5.59 16 20 O -0.50 -7.36 12.73 -19.38 -0.25 -7.61 16 21 O -0.51 -4.41 13.54 -41.16 -0.56 -4.97 16 22 C -0.03 -0.45 9.30 -39.13 -0.36 -0.82 16 23 C -0.05 -0.91 6.87 -79.80 -0.55 -1.46 16 24 N 0.03 0.64 4.45 34.04 0.15 0.79 16 25 O -0.23 -4.57 18.45 -29.46 -0.54 -5.11 16 26 O -0.08 -1.70 16.95 -29.46 -0.50 -2.20 16 27 H 0.03 0.54 7.52 -51.93 -0.39 0.15 16 28 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.03 6.60 -51.93 -0.34 1.69 16 31 H 0.03 0.45 7.04 -51.93 -0.37 0.08 16 32 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.00 -0.02 7.45 -51.93 -0.39 -0.40 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.14 2.33 7.10 -52.48 -0.37 1.96 16 36 H 0.12 1.42 7.02 -52.49 -0.37 1.05 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.41 2.29 8.98 45.56 0.41 2.70 16 40 H 0.15 1.84 7.61 -52.49 -0.40 1.45 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -34.18 347.31 -7.85 -42.03 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.83 Total: 0.76 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.87 Total: -8.54 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.49 Total: -36.20 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.85 Total: -19.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.18 -7.85 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218080811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.235 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds