Wall clock time and date at job start Tue Mar 31 2020 13:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47061 * 2 1 4 4 C 1.50703 * 109.47469 * 240.00041 * 2 1 3 5 5 H 1.07991 * 120.00127 * 239.99656 * 4 2 1 6 6 C 1.37880 * 119.99887 * 60.00035 * 4 2 1 7 7 N 1.31514 * 120.00190 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46825 * 59.99710 * 8 6 4 10 10 H 1.48498 * 109.47301 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47156 * 300.00109 * 8 6 4 12 12 N 1.46495 * 109.47343 * 119.99866 * 2 1 3 13 13 C 1.46503 * 119.99826 * 60.00063 * 12 2 1 14 14 S 1.65605 * 120.00197 * 240.00445 * 12 2 1 15 15 O 1.42097 * 106.40024 * 156.46012 * 14 12 2 16 16 O 1.42097 * 106.40085 * 23.53588 * 14 12 2 17 17 N 1.65596 * 107.21568 * 269.99672 * 14 12 2 18 18 C 1.47022 * 125.64668 * 90.00175 * 17 14 12 19 19 C 1.54327 * 107.27336 * 178.97441 * 18 17 14 20 20 H 1.08993 * 110.72079 * 96.16743 * 19 18 17 21 21 C 1.52997 * 110.72042 * 219.44597 * 19 18 17 22 22 C 1.55165 * 102.94078 * 337.80587 * 19 18 17 23 23 H 1.09001 * 111.00003 * 277.43047 * 22 19 18 24 24 C 1.50698 * 111.00281 * 153.57654 * 22 19 18 25 25 O 1.20825 * 120.00212 * 359.97438 * 24 22 19 26 26 O 1.34233 * 119.99391 * 180.02562 * 24 22 19 27 27 C 1.47425 * 125.64997 * 270.03933 * 17 14 12 28 28 H 1.09002 * 109.47101 * 60.00506 * 1 2 3 29 29 H 1.08999 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47123 * 299.99897 * 1 2 3 31 31 H 0.96994 * 120.00366 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.47085 * 269.99980 * 13 12 2 33 33 H 1.09002 * 109.46986 * 30.00538 * 13 12 2 34 34 H 1.09004 * 109.46880 * 150.00466 * 13 12 2 35 35 H 1.08997 * 109.88723 * 59.55850 * 18 17 14 36 36 H 1.09000 * 110.01436 * 298.46402 * 18 17 14 37 37 H 1.08999 * 109.47239 * 58.54617 * 21 19 18 38 38 H 1.09007 * 109.46791 * 178.54602 * 21 19 18 39 39 H 1.08997 * 109.47298 * 298.53811 * 21 19 18 40 40 H 0.96706 * 116.99419 * 179.97438 * 26 24 22 41 41 H 1.08997 * 110.36855 * 322.93307 * 27 17 14 42 42 H 1.08999 * 110.36490 * 85.14622 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6035 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5202 -4.0077 10 1 1.8262 -0.4205 -5.2205 11 1 3.8065 -1.1208 -4.0081 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1143 2.2863 15 8 2.8228 -0.5645 3.5258 16 8 2.6903 1.4973 2.1192 17 7 4.5437 -0.1041 1.8181 18 6 5.2945 0.7685 0.9035 19 6 6.7197 0.1887 0.7836 20 1 6.8059 -0.4430 -0.1005 21 6 7.7596 1.3105 0.7528 22 6 6.8612 -0.6558 2.0776 23 1 7.1431 -0.0294 2.9239 24 6 7.8495 -1.7771 1.8853 25 8 8.4065 -1.9159 0.8222 26 8 8.1101 -2.6223 2.8950 27 6 5.4233 -1.2061 2.2487 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7082 1.1609 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5296 -2.5968 0.4707 34 1 2.4630 -2.5818 1.9864 35 1 5.3385 1.7796 1.3082 36 1 4.8162 0.7820 -0.0759 37 1 7.6755 1.9089 1.6600 38 1 8.7586 0.8782 0.6940 39 1 7.5858 1.9433 -0.1174 40 1 8.7509 -3.3261 2.7241 41 1 5.2346 -1.4563 3.2926 42 1 5.2724 -2.0810 1.6164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263212931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:12 Heat of formation + Delta-G solvation = -188.887296 kcal Electronic energy + Delta-G solvation = -27019.809107 eV Core-core repulsion = 23125.738992 eV Total energy + Delta-G solvation = -3894.070115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60299 -39.34087 -38.39348 -37.89465 -37.08172 -36.94505 -34.51808 -33.57268 -31.33010 -30.93788 -27.26519 -27.08924 -27.01932 -25.17156 -22.81242 -22.49750 -20.98173 -20.00426 -19.09411 -18.83572 -18.55229 -18.31869 -17.88326 -17.16953 -16.79627 -16.39028 -15.76403 -15.30773 -15.16604 -14.89708 -14.67023 -14.57215 -14.36283 -14.07300 -13.78161 -13.64365 -13.46440 -13.34815 -13.19734 -13.02480 -13.00686 -12.99656 -12.75307 -12.70187 -12.53196 -12.24364 -12.14378 -12.09086 -11.95944 -11.88467 -11.71367 -11.58703 -11.20734 -10.49804 -10.09572 -9.67816 -8.09640 -6.24275 -0.42891 1.14305 1.45032 1.46060 1.52832 1.85860 2.10099 2.44279 2.55844 3.03676 3.18724 3.37653 3.50551 3.86723 4.07726 4.16364 4.22453 4.34700 4.48081 4.52399 4.67033 4.68699 4.76709 4.77938 4.81212 4.95667 4.96093 5.04001 5.07482 5.14378 5.17815 5.24804 5.32279 5.36388 5.60680 5.61100 5.71984 5.85187 6.09707 6.28298 6.84357 6.99622 7.45314 8.94631 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.005580 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.453503 B = 5016.273029 C = 6112.648409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.273 3.727 3 H 0.026 0.974 4 C -0.529 4.529 5 H 0.066 0.934 6 C 0.021 3.979 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.998 5.998 13 C 0.100 3.900 14 S 2.809 3.191 15 O -0.996 6.996 16 O -1.007 7.007 17 N -1.017 6.017 18 C 0.120 3.880 19 C -0.078 4.078 20 H 0.085 0.915 21 C -0.139 4.139 22 C -0.087 4.087 23 H 0.148 0.852 24 C 0.503 3.497 25 O -0.538 6.538 26 O -0.506 6.506 27 C 0.128 3.872 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.430 0.570 41 H 0.106 0.894 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.427 -5.374 9.542 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.568 4.568 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.839 5.839 13 C -0.045 4.045 14 S 2.820 3.180 15 O -0.980 6.980 16 O -0.992 6.992 17 N -0.857 5.857 18 C -0.005 4.005 19 C -0.098 4.098 20 H 0.103 0.897 21 C -0.196 4.196 22 C -0.108 4.108 23 H 0.165 0.835 24 C 0.345 3.655 25 O -0.428 6.428 26 O -0.320 6.320 27 C 0.002 3.998 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.292 0.708 41 H 0.124 0.876 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.798 -4.492 9.997 16.850 hybrid contribution 0.393 -0.884 -1.621 1.888 sum 13.192 -5.376 8.376 16.525 Atomic orbital electron populations 1.21937 0.97834 1.00051 0.99984 1.18401 0.91979 0.91383 0.81349 0.95612 1.21547 1.31575 1.13051 0.90653 0.91610 1.25613 0.95169 0.95553 1.01587 1.69995 1.37217 1.23861 1.24376 0.85689 0.78709 0.78771 0.78900 1.19639 1.21345 1.19833 1.57739 1.64715 1.22609 1.38845 1.21382 1.00493 0.80490 1.02171 1.00880 0.71916 0.72491 0.72707 1.93522 1.86137 1.76300 1.42067 1.93535 1.84223 1.34238 1.87183 1.58920 1.28565 1.37121 1.61045 1.21914 0.91547 0.93877 0.93181 1.22130 0.93500 0.97487 0.96703 0.89683 1.21762 0.97492 0.96904 1.03473 1.22329 0.92134 0.94032 1.02295 0.83487 1.22899 0.80271 0.81544 0.80775 1.90738 1.50866 1.72472 1.28696 1.84511 1.62305 1.42631 1.42515 1.21985 0.86701 0.89025 1.02039 0.91138 0.93803 0.96183 0.92692 0.92798 0.90655 0.90730 0.90202 0.92350 0.90635 0.91593 0.91492 0.70808 0.87581 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.97 71.98 0.65 -5.97 16 2 C 0.27 13.32 2.62 44.25 0.12 13.43 16 3 H 0.03 1.43 6.91 -2.39 -0.02 1.42 16 4 C -0.53 -26.71 7.99 25.60 0.20 -26.51 16 5 H 0.07 3.21 7.33 -2.92 -0.02 3.18 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.92 -50.43 11.32 21.45 0.24 -50.19 16 8 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -1.00 -40.65 3.12 -520.42 -1.62 -42.27 16 13 C 0.10 3.39 9.28 127.77 1.19 4.58 16 14 S 2.81 108.09 6.30 -56.49 -0.36 107.73 16 15 O -1.00 -38.34 16.53 -128.00 -2.12 -40.45 16 16 O -1.01 -45.87 16.28 -128.00 -2.08 -47.96 16 17 N -1.02 -31.65 3.75 -506.41 -1.90 -33.56 16 18 C 0.12 3.56 6.59 86.73 0.57 4.13 16 19 C -0.08 -1.84 2.68 -9.60 -0.03 -1.86 16 20 H 0.08 2.30 7.39 -2.39 -0.02 2.28 16 21 C -0.14 -2.59 9.13 71.98 0.66 -1.93 16 22 C -0.09 -1.74 2.99 -10.14 -0.03 -1.77 16 23 H 0.15 2.21 8.04 -2.39 -0.02 2.19 16 24 C 0.50 9.84 7.64 71.24 0.54 10.39 16 25 O -0.54 -13.91 16.47 21.97 0.36 -13.55 16 26 O -0.51 -6.81 13.42 -51.44 -0.69 -7.50 16 27 C 0.13 3.06 6.56 86.86 0.57 3.63 16 28 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 29 H 0.04 1.94 7.67 -2.39 -0.02 1.92 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.07 2.61 7.02 -2.39 -0.02 2.60 16 34 H 0.07 2.11 7.79 -2.38 -0.02 2.09 16 35 H 0.08 2.23 7.82 -2.39 -0.02 2.21 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.43 2.14 9.10 -74.05 -0.67 1.47 16 41 H 0.11 2.27 7.78 -2.39 -0.02 2.25 16 42 H 0.07 1.71 8.03 -2.39 -0.02 1.69 16 Total: -1.00 -68.97 355.93 -0.89 -69.87 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.36 Total: 14.76 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.89 Total: -0.35 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -3.28 Total: -126.01 kcal Atomic # 8 Polarization: -104.94 SS G_CDS: -4.53 Total: -109.46 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 108.09 SS G_CDS: -0.36 Total: 107.73 kcal Total: -68.97 -0.89 -69.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263212931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.019 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds