Wall clock time and date at job start Tue Mar 31 2020 12:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 H 1.09003 * 109.46910 * 56.57691 * 3 2 1 5 5 C 1.50697 * 109.47145 * 176.57259 * 3 2 1 6 6 H 1.08002 * 119.99953 * 114.62537 * 5 3 2 7 7 C 1.37882 * 120.00140 * 294.62136 * 5 3 2 8 8 N 1.31513 * 119.99824 * 160.51494 * 7 5 3 9 9 Si 1.86799 * 120.00145 * 340.51671 * 7 5 3 10 10 H 1.48494 * 109.47250 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47152 * 299.99927 * 9 7 5 12 12 H 1.48505 * 109.46843 * 59.99717 * 9 7 5 13 13 N 1.46502 * 109.47168 * 296.57546 * 3 2 1 14 14 C 1.34773 * 120.00109 * 84.99817 * 13 3 2 15 15 O 1.21368 * 120.00216 * 0.02562 * 14 13 3 16 16 C 1.49331 * 120.00180 * 179.97438 * 14 13 3 17 17 O 1.21381 * 119.99752 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00206 * 179.97438 * 16 14 13 19 19 C 1.39849 * 119.99958 * 184.41921 * 18 16 14 20 20 C 1.38917 * 120.00605 * 141.49956 * 19 18 16 21 21 C 1.38141 * 120.06277 * 180.02562 * 20 19 18 22 22 C 1.38589 * 120.12297 * 0.02562 * 21 20 19 23 23 C 1.39303 * 119.95551 * 359.97438 * 22 21 20 24 24 C 1.38462 * 119.90093 * 359.71561 * 23 22 21 25 25 O 1.36509 * 108.64063 * 179.97438 * 23 22 21 26 26 C 1.43980 * 105.49526 * 342.69875 * 25 23 22 27 27 O 1.36583 * 131.43330 * 179.97438 * 22 21 20 28 28 H 1.08997 * 109.47351 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47189 * 300.00156 * 1 2 3 30 30 H 1.09002 * 109.46872 * 59.99723 * 1 2 3 31 31 H 1.09001 * 109.47189 * 239.99843 * 2 1 3 32 32 H 1.09002 * 109.46663 * 119.99766 * 2 1 3 33 33 H 0.97004 * 120.00138 * 354.92995 * 8 7 5 34 34 H 0.96993 * 119.99590 * 264.99945 * 13 3 2 35 35 H 0.97006 * 119.99548 * 4.42132 * 18 16 14 36 36 H 1.07996 * 119.97192 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.93972 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.01743 * 180.29832 * 24 23 22 39 39 H 1.08997 * 110.56827 * 268.59198 * 26 25 23 40 40 H 1.08996 * 110.57080 * 145.72233 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6275 1.9737 0.8577 5 6 3.5446 1.4432 0.0849 6 1 4.1319 1.8162 -0.7411 7 6 4.1715 0.9678 1.2173 8 7 5.4352 0.6070 1.1669 9 14 3.2259 0.8362 2.8228 10 1 4.1193 0.3003 3.8810 11 1 2.7370 2.1807 3.2211 12 1 2.0692 -0.0777 2.6425 13 7 1.6203 2.1089 -1.2353 14 6 0.4005 2.6767 -1.3137 15 8 -0.3500 2.6364 -0.3608 16 6 -0.0272 3.3565 -2.5726 17 8 0.7236 3.3972 -3.5255 18 7 -1.2472 3.9239 -2.6512 19 6 -1.6837 4.4791 -3.8583 20 6 -3.0091 4.3369 -4.2492 21 6 -3.4415 4.8843 -5.4416 22 6 -2.5547 5.5762 -6.2512 23 6 -1.2250 5.7206 -5.8621 24 6 -0.7936 5.1772 -4.6638 25 8 -0.5647 6.4334 -6.8209 26 6 -1.4017 6.3719 -7.9907 27 8 -2.7270 6.1996 -7.4542 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 5.9057 0.6055 0.3186 34 1 2.2202 2.1414 -1.9967 35 1 -1.8224 3.9472 -1.8704 36 1 -3.7022 3.7978 -3.6204 37 1 -4.4724 4.7729 -5.7434 38 1 0.2358 5.2922 -4.3580 39 1 -1.1268 5.5211 -8.6140 40 1 -1.3362 7.3004 -8.5578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275857466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:41 Heat of formation + Delta-G solvation = -97.150758 kcal Electronic energy + Delta-G solvation = -26377.910651 eV Core-core repulsion = 22352.374579 eV Total energy + Delta-G solvation = -4025.536072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42729 -40.82119 -39.00095 -37.66570 -36.53049 -35.66957 -34.52262 -32.52488 -31.53264 -30.81769 -29.51483 -27.57576 -26.20781 -24.83824 -23.42061 -22.73207 -22.27965 -20.61131 -19.73898 -19.20636 -18.41247 -18.07308 -17.61991 -17.10419 -16.93080 -16.23728 -15.87375 -15.35204 -15.23551 -14.75879 -14.46950 -14.20389 -14.04741 -13.71154 -13.43857 -13.27711 -13.16511 -13.12825 -12.77683 -12.54372 -12.38775 -11.90600 -11.84046 -11.57645 -11.22682 -10.99100 -10.80417 -10.53919 -10.13991 -9.97840 -9.73530 -9.32261 -9.16366 -8.98389 -8.45064 -8.35237 -8.09197 -6.65944 -4.30069 0.69629 0.92674 1.64387 2.27176 2.65266 3.14431 3.23809 3.33276 3.39633 3.51579 3.54825 3.92653 4.20262 4.37108 4.37470 4.57926 4.73377 4.74740 4.85584 4.94982 5.05524 5.23085 5.35932 5.76761 5.82702 5.87705 5.93632 5.96246 5.97475 6.12515 6.27652 6.51433 6.65162 6.74958 6.81592 6.86184 6.91199 7.13287 7.23026 7.46337 7.69358 8.14245 8.21496 8.43504 8.72223 9.37770 10.73428 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027530 B = 0.002705 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.830158 B =10348.970505 C =10983.863249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.625 4.625 6 H 0.065 0.935 7 C 0.045 3.955 8 N -0.890 5.890 9 Si 1.034 2.966 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.269 1.269 13 N -0.660 5.660 14 C 0.496 3.504 15 O -0.530 6.530 16 C 0.508 3.492 17 O -0.501 6.501 18 N -0.649 5.649 19 C 0.159 3.841 20 C -0.129 4.129 21 C -0.081 4.081 22 C 0.015 3.985 23 C 0.052 3.948 24 C -0.100 4.100 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.310 6.310 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.272 0.728 34 H 0.406 0.594 35 H 0.427 0.573 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.659 8.243 -13.880 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.065 0.935 5 C -0.662 4.662 6 H 0.084 0.916 7 C -0.163 4.163 8 N -0.522 5.522 9 Si 0.861 3.139 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.196 1.196 13 N -0.308 5.308 14 C 0.275 3.725 15 O -0.409 6.409 16 C 0.291 3.709 17 O -0.374 6.374 18 N -0.297 5.297 19 C 0.065 3.935 20 C -0.149 4.149 21 C -0.100 4.100 22 C -0.030 4.030 23 C 0.007 3.993 24 C -0.121 4.121 25 O -0.222 6.222 26 C 0.101 3.899 27 O -0.226 6.226 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.241 0.759 35 H 0.266 0.734 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.102 0.898 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.353 7.976 -12.340 22.738 hybrid contribution 0.017 0.516 -2.023 2.088 sum -17.336 8.492 -14.363 24.061 Atomic orbital electron populations 1.21898 0.97338 0.99285 1.01684 1.22358 0.93833 0.99378 1.02256 1.19270 0.95931 0.88528 0.81903 0.93514 1.22048 0.89129 1.48848 1.06177 0.91647 1.25662 0.96440 0.92018 1.02132 1.70852 1.10948 1.40399 1.29994 0.84208 0.75816 0.77734 0.76168 1.20768 1.20539 1.19550 1.46213 1.13710 1.52049 1.18854 1.19589 0.84301 0.81472 0.87135 1.90742 1.52810 1.59763 1.37559 1.20959 0.81633 0.78800 0.89542 1.90771 1.51664 1.56724 1.38257 1.43151 1.18211 1.56322 1.12067 1.17191 0.92735 0.95879 0.87737 1.20745 0.94877 1.02622 0.96657 1.19802 0.99483 0.97427 0.93294 1.19810 0.94005 0.99939 0.89215 1.19477 0.89941 0.96579 0.93344 1.20010 1.01931 0.97477 0.92669 1.87391 1.44973 1.68665 1.21158 1.25640 0.72555 1.04009 0.87652 1.87366 1.29118 1.74761 1.31393 0.94678 0.92662 0.93798 0.92693 0.90989 0.91814 0.75850 0.73438 0.83710 0.84118 0.83249 0.89800 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.49 37.16 0.32 -2.38 16 2 C -0.14 -2.96 5.32 -26.73 -0.14 -3.10 16 3 C 0.25 5.61 1.85 -69.08 -0.13 5.49 16 4 H 0.05 1.13 6.21 -51.93 -0.32 0.81 16 5 C -0.62 -16.42 8.99 -34.44 -0.31 -16.73 16 6 H 0.07 1.82 7.96 -52.49 -0.42 1.41 16 7 C 0.05 1.23 5.29 -17.82 -0.09 1.14 16 8 N -0.89 -25.89 13.70 55.43 0.76 -25.13 16 9 Si 1.03 23.95 26.37 -169.99 -4.48 19.47 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.77 5.79 56.52 0.33 -5.44 16 13 N -0.66 -13.15 5.00 -55.40 -0.28 -13.42 16 14 C 0.50 8.92 6.38 -11.64 -0.07 8.85 16 15 O -0.53 -10.05 13.61 5.48 0.07 -9.97 16 16 C 0.51 7.91 7.71 -11.64 -0.09 7.82 16 17 O -0.50 -8.69 14.16 5.47 0.08 -8.61 16 18 N -0.65 -7.94 5.31 -10.29 -0.05 -7.99 16 19 C 0.16 1.87 6.23 -83.71 -0.52 1.35 16 20 C -0.13 -1.17 9.96 -39.37 -0.39 -1.56 16 21 C -0.08 -0.73 10.05 -39.49 -0.40 -1.13 16 22 C 0.02 0.17 7.15 -39.06 -0.28 -0.11 16 23 C 0.05 0.65 7.14 -39.10 -0.28 0.37 16 24 C -0.10 -1.33 8.68 -39.26 -0.34 -1.67 16 25 O -0.31 -3.65 11.40 -45.72 -0.52 -4.18 16 26 C 0.21 1.73 8.89 101.05 0.90 2.63 16 27 O -0.31 -3.22 11.41 -45.96 -0.52 -3.75 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.05 7.75 -51.93 -0.40 0.65 16 30 H 0.04 0.80 5.68 -51.93 -0.30 0.50 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.59 5.00 -51.93 -0.26 1.33 16 33 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 34 H 0.41 7.85 7.99 -40.82 -0.33 7.52 16 35 H 0.43 4.36 8.30 -40.82 -0.34 4.03 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.15 2.19 6.51 -52.49 -0.34 1.85 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -31.13 335.90 -6.19 -37.31 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.47 Total: 10.24 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.83 Total: 0.97 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.43 Total: -46.54 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.89 Total: -26.51 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.48 Total: 19.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.13 -6.19 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275857466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.838 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds