Wall clock time and date at job start Tue Mar 31 2020 12:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 H 1.09003 * 109.46910 * 56.57691 * 3 2 1 5 5 C 1.50697 * 109.47145 * 176.57259 * 3 2 1 6 6 H 1.08002 * 119.99953 * 114.62537 * 5 3 2 7 7 C 1.37882 * 120.00140 * 294.62136 * 5 3 2 8 8 N 1.31513 * 119.99824 * 160.51494 * 7 5 3 9 9 Si 1.86799 * 120.00145 * 340.51671 * 7 5 3 10 10 H 1.48494 * 109.47250 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47152 * 299.99927 * 9 7 5 12 12 H 1.48505 * 109.46843 * 59.99717 * 9 7 5 13 13 N 1.46502 * 109.47168 * 296.57546 * 3 2 1 14 14 C 1.34773 * 120.00109 * 84.99817 * 13 3 2 15 15 O 1.21368 * 120.00216 * 0.02562 * 14 13 3 16 16 C 1.49331 * 120.00180 * 179.97438 * 14 13 3 17 17 O 1.21381 * 119.99752 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00206 * 179.97438 * 16 14 13 19 19 C 1.39849 * 119.99958 * 184.41921 * 18 16 14 20 20 C 1.38917 * 120.00605 * 141.49956 * 19 18 16 21 21 C 1.38141 * 120.06277 * 180.02562 * 20 19 18 22 22 C 1.38589 * 120.12297 * 0.02562 * 21 20 19 23 23 C 1.39303 * 119.95551 * 359.97438 * 22 21 20 24 24 C 1.38462 * 119.90093 * 359.71561 * 23 22 21 25 25 O 1.36509 * 108.64063 * 179.97438 * 23 22 21 26 26 C 1.43980 * 105.49526 * 342.69875 * 25 23 22 27 27 O 1.36583 * 131.43330 * 179.97438 * 22 21 20 28 28 H 1.08997 * 109.47351 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47189 * 300.00156 * 1 2 3 30 30 H 1.09002 * 109.46872 * 59.99723 * 1 2 3 31 31 H 1.09001 * 109.47189 * 239.99843 * 2 1 3 32 32 H 1.09002 * 109.46663 * 119.99766 * 2 1 3 33 33 H 0.97004 * 120.00138 * 354.92995 * 8 7 5 34 34 H 0.96993 * 119.99590 * 264.99945 * 13 3 2 35 35 H 0.97006 * 119.99548 * 4.42132 * 18 16 14 36 36 H 1.07996 * 119.97192 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.93972 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.01743 * 180.29832 * 24 23 22 39 39 H 1.08997 * 110.56827 * 268.59198 * 26 25 23 40 40 H 1.08996 * 110.57080 * 145.72233 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6275 1.9737 0.8577 5 6 3.5446 1.4432 0.0849 6 1 4.1319 1.8162 -0.7411 7 6 4.1715 0.9678 1.2173 8 7 5.4352 0.6070 1.1669 9 14 3.2259 0.8362 2.8228 10 1 4.1193 0.3003 3.8810 11 1 2.7370 2.1807 3.2211 12 1 2.0692 -0.0777 2.6425 13 7 1.6203 2.1089 -1.2353 14 6 0.4005 2.6767 -1.3137 15 8 -0.3500 2.6364 -0.3608 16 6 -0.0272 3.3565 -2.5726 17 8 0.7236 3.3972 -3.5255 18 7 -1.2472 3.9239 -2.6512 19 6 -1.6837 4.4791 -3.8583 20 6 -3.0091 4.3369 -4.2492 21 6 -3.4415 4.8843 -5.4416 22 6 -2.5547 5.5762 -6.2512 23 6 -1.2250 5.7206 -5.8621 24 6 -0.7936 5.1772 -4.6638 25 8 -0.5647 6.4334 -6.8209 26 6 -1.4017 6.3719 -7.9907 27 8 -2.7270 6.1996 -7.4542 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 5.9057 0.6055 0.3186 34 1 2.2202 2.1414 -1.9967 35 1 -1.8224 3.9472 -1.8704 36 1 -3.7022 3.7978 -3.6204 37 1 -4.4724 4.7729 -5.7434 38 1 0.2358 5.2922 -4.3580 39 1 -1.1268 5.5211 -8.6140 40 1 -1.3362 7.3004 -8.5578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275857466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:40 Heat of formation + Delta-G solvation = -120.770665 kcal Electronic energy + Delta-G solvation = -26378.934887 eV Core-core repulsion = 22352.374579 eV Total energy + Delta-G solvation = -4026.560308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.21688 -42.06746 -40.32206 -38.72300 -37.33147 -37.30474 -35.64159 -34.47973 -33.15792 -31.64872 -30.41874 -29.33898 -27.02042 -26.05666 -24.40212 -24.17814 -23.50804 -22.01177 -21.32842 -20.51753 -19.65656 -19.07587 -18.75115 -18.26033 -18.00935 -17.46109 -17.06283 -16.78453 -16.39608 -15.66494 -15.58577 -15.52303 -15.08707 -15.07289 -14.77552 -14.51603 -14.49753 -14.10478 -14.02548 -13.91714 -13.86493 -13.57983 -12.96788 -12.66306 -12.59626 -12.48612 -12.29212 -12.15753 -11.78227 -11.44040 -11.13721 -11.02679 -10.71576 -10.52745 -10.02032 -9.86502 -8.94269 -8.82770 -6.46826 -0.24168 0.09519 0.41215 1.17455 1.48839 1.53291 1.72480 1.76723 2.07321 2.39420 2.45130 2.50515 2.70312 2.96718 3.36414 3.42059 3.77527 3.94941 3.99368 4.05103 4.24346 4.30014 4.38359 4.45258 4.46698 4.50346 4.78992 4.95833 5.03775 5.05560 5.09730 5.13230 5.14806 5.24197 5.35252 5.42040 5.51391 5.61113 5.87526 5.98520 6.03626 6.42566 6.48966 6.67625 6.96669 7.28974 8.55707 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027530 B = 0.002705 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.830158 B =10348.970505 C =10983.863249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.040 0.960 5 C -0.625 4.625 6 H 0.035 0.965 7 C 0.000 4.000 8 N -0.923 5.923 9 Si 1.068 2.932 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.238 1.238 13 N -0.670 5.670 14 C 0.501 3.499 15 O -0.535 6.535 16 C 0.515 3.485 17 O -0.524 6.524 18 N -0.628 5.628 19 C 0.140 3.860 20 C -0.107 4.107 21 C -0.073 4.073 22 C 0.012 3.988 23 C 0.029 3.971 24 C -0.121 4.121 25 O -0.330 6.330 26 C 0.205 3.795 27 O -0.316 6.316 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.259 0.741 34 H 0.407 0.593 35 H 0.438 0.562 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.533 8.177 -14.201 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.662 4.662 6 H 0.053 0.947 7 C -0.202 4.202 8 N -0.557 5.557 9 Si 0.889 3.111 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.162 1.162 13 N -0.319 5.319 14 C 0.281 3.719 15 O -0.413 6.413 16 C 0.297 3.703 17 O -0.399 6.399 18 N -0.277 5.277 19 C 0.046 3.954 20 C -0.127 4.127 21 C -0.092 4.092 22 C -0.033 4.033 23 C -0.016 4.016 24 C -0.142 4.142 25 O -0.247 6.247 26 C 0.094 3.906 27 O -0.233 6.233 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.242 0.758 35 H 0.279 0.721 36 H 0.199 0.801 37 H 0.193 0.807 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.287 7.937 -12.689 26.022 hybrid contribution 1.186 0.645 -2.089 2.487 sum -20.101 8.582 -14.778 26.384 Atomic orbital electron populations 1.21796 0.94884 1.00962 1.01623 1.22255 0.95960 0.97677 1.01742 1.18999 0.93409 0.89931 0.82891 0.94266 1.22226 0.91335 1.47608 1.05043 0.94664 1.26929 0.96452 0.91394 1.05377 1.70961 1.12248 1.43185 1.29277 0.83784 0.75784 0.78931 0.72558 1.21059 1.19437 1.16242 1.46052 1.14840 1.53004 1.18046 1.19858 0.83364 0.80728 0.87922 1.90728 1.52781 1.59732 1.38106 1.20386 0.82645 0.79154 0.88140 1.90781 1.52610 1.57921 1.38614 1.42929 1.16915 1.54889 1.12943 1.17347 0.93810 0.96744 0.87454 1.21115 0.93772 1.01181 0.96624 1.20259 1.00666 0.95796 0.92481 1.20131 0.93657 0.99881 0.89602 1.19616 0.91028 0.97400 0.93526 1.19947 1.01270 0.99142 0.93803 1.87351 1.46272 1.68807 1.22231 1.26129 0.71227 1.06581 0.86650 1.87345 1.30218 1.74649 1.31083 0.92165 0.92871 0.93630 0.93037 0.91740 0.93238 0.75817 0.72088 0.80106 0.80695 0.85826 0.88112 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.49 71.98 0.61 -4.06 16 2 C -0.14 -5.65 5.32 30.59 0.16 -5.49 16 3 C 0.25 11.40 1.85 44.24 0.08 11.48 16 4 H 0.04 1.86 6.21 -2.39 -0.01 1.85 16 5 C -0.62 -33.65 8.99 25.60 0.23 -33.42 16 6 H 0.04 2.06 7.96 -2.91 -0.02 2.04 16 7 C 0.00 -0.01 5.29 84.66 0.45 0.44 16 8 N -0.92 -55.30 13.70 21.45 0.29 -55.00 16 9 Si 1.07 47.79 26.37 68.60 1.81 49.60 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.24 -9.42 5.79 99.48 0.58 -8.85 16 13 N -0.67 -26.82 5.00 -447.55 -2.24 -29.05 16 14 C 0.50 17.61 6.38 87.23 0.56 18.17 16 15 O -0.53 -19.30 13.61 -3.30 -0.04 -19.34 16 16 C 0.51 15.75 7.71 87.23 0.67 16.42 16 17 O -0.52 -18.49 14.16 -3.34 -0.05 -18.54 16 18 N -0.63 -14.34 5.31 -304.80 -1.62 -15.96 16 19 C 0.14 3.07 6.23 38.18 0.24 3.30 16 20 C -0.11 -1.56 9.96 22.41 0.22 -1.33 16 21 C -0.07 -1.06 10.05 22.33 0.22 -0.84 16 22 C 0.01 0.25 7.15 22.61 0.16 0.41 16 23 C 0.03 0.73 7.14 22.58 0.16 0.89 16 24 C -0.12 -3.23 8.68 22.48 0.20 -3.03 16 25 O -0.33 -7.89 11.40 -76.16 -0.87 -8.76 16 26 C 0.20 3.02 8.89 113.37 1.01 4.03 16 27 O -0.32 -5.94 11.41 -77.03 -0.88 -6.82 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.86 7.75 -2.39 -0.02 1.84 16 30 H 0.04 1.54 5.68 -2.39 -0.01 1.53 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.73 5.00 -2.39 -0.01 2.72 16 33 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 34 H 0.41 16.19 7.99 -92.71 -0.74 15.44 16 35 H 0.44 7.85 8.30 -92.70 -0.77 7.08 16 36 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.12 3.87 6.51 -2.91 -0.02 3.86 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.16 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.54 335.90 0.82 -68.72 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.56 Total: 28.19 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 4.97 Total: 6.96 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -3.56 Total: -100.01 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -1.84 Total: -53.46 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.81 Total: 49.60 kcal Total: -69.54 0.82 -68.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275857466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.052 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds