Wall clock time and date at job start Tue Mar 31 2020 13:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47084 * 2 1 4 4 C 1.36939 * 120.00098 * 267.11513 * 3 2 1 5 5 H 1.07995 * 119.99835 * 321.39655 * 4 3 2 6 6 C 1.38814 * 119.99873 * 141.39356 * 4 3 2 7 7 N 1.31616 * 119.99901 * 158.04669 * 6 4 3 8 8 Si 1.86796 * 120.00062 * 338.04419 * 6 4 3 9 9 H 1.48503 * 109.47353 * 95.63981 * 8 6 4 10 10 H 1.48500 * 109.47277 * 215.63931 * 8 6 4 11 11 H 1.48497 * 109.47460 * 335.63808 * 8 6 4 12 12 C 1.46497 * 119.99675 * 87.11340 * 3 2 1 13 13 C 1.50695 * 109.47393 * 90.00412 * 12 3 2 14 14 C 1.39937 * 126.02626 * 89.99288 * 13 12 3 15 15 C 1.50698 * 125.80883 * 0.04067 * 14 13 12 16 16 N 1.30821 * 108.38891 * 180.02562 * 14 13 12 17 17 N 1.40092 * 108.28357 * 0.02562 * 16 14 13 18 18 C 1.39810 * 126.10278 * 179.97438 * 17 16 14 19 19 C 1.38946 * 119.68719 * 335.02823 * 18 17 16 20 20 C 1.38416 * 119.10639 * 180.24695 * 19 18 17 21 21 C 1.38809 * 118.48156 * 359.53212 * 20 19 18 22 22 C 1.38114 * 119.29091 * 0.42603 * 21 20 19 23 23 N 1.31894 * 120.84547 * 359.81421 * 22 21 20 24 24 C 1.35428 * 126.02411 * 270.33183 * 13 12 3 25 25 Cl 1.73595 * 126.20937 * 359.94864 * 24 13 12 26 26 H 1.09001 * 109.47529 * 59.99918 * 1 2 3 27 27 H 1.09001 * 109.46804 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47011 * 299.99488 * 1 2 3 29 29 H 1.09001 * 109.47011 * 240.00512 * 2 1 3 30 30 H 1.09001 * 109.47529 * 120.00082 * 2 1 3 31 31 H 0.97006 * 120.00116 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47760 * 330.00099 * 12 3 2 33 33 H 1.09009 * 109.47101 * 210.00291 * 12 3 2 34 34 H 1.09001 * 109.47348 * 270.02169 * 15 14 13 35 35 H 1.08998 * 109.47114 * 30.02618 * 15 14 13 36 36 H 1.09006 * 109.47312 * 150.02138 * 15 14 13 37 37 H 1.07997 * 120.44929 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.76066 * 179.74809 * 20 19 18 39 39 H 1.07997 * 120.35113 * 180.22144 * 21 20 19 40 40 H 1.08002 * 119.57717 * 179.79148 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3028 2.0069 -1.1844 5 1 2.7708 1.4564 -1.9871 6 6 1.9896 3.3486 -1.3533 7 7 2.6164 4.0610 -2.2654 8 14 0.6784 4.1432 -0.2862 9 1 1.3224 4.8183 0.8691 10 1 -0.0734 5.1424 -1.0873 11 1 -0.2564 3.1006 0.2080 12 6 2.2022 2.0931 1.2671 13 6 3.6031 1.8643 1.7732 14 6 4.7217 2.6539 1.4843 15 6 4.7321 3.8828 0.6122 16 7 5.7570 2.1440 2.1005 17 7 5.3343 1.0090 2.8046 18 6 6.1399 0.1800 3.5910 19 6 7.5043 0.1063 3.3390 20 6 8.2897 -0.7223 4.1216 21 6 7.6812 -1.4435 5.1396 22 6 6.3193 -1.3205 5.3339 23 7 5.5959 -0.5265 4.5686 24 6 4.0026 0.8546 2.5825 25 17 2.9955 -0.4057 3.2234 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.3978 4.9987 -2.3832 32 1 1.4860 1.7215 2.0000 33 1 2.0420 3.1600 1.1111 34 1 4.9347 3.5946 -0.4193 35 1 3.7616 4.3759 0.6677 36 1 5.5075 4.5668 0.9573 37 1 7.9454 0.6842 2.5404 38 1 9.3524 -0.8031 3.9465 39 1 8.2658 -2.0962 5.7708 40 1 5.8405 -1.8821 6.1225 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288959867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:50 Heat of formation + Delta-G solvation = 144.556378 kcal Electronic energy + Delta-G solvation = -24989.521968 eV Core-core repulsion = 21447.469020 eV Total energy + Delta-G solvation = -3542.052948 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35909 -39.93606 -36.46818 -36.24324 -33.92074 -32.64956 -31.93383 -30.87901 -30.63206 -28.78884 -27.48249 -25.68527 -23.81420 -23.63308 -22.89002 -20.65176 -20.20768 -19.28634 -18.24356 -16.75335 -16.57197 -16.03736 -15.52130 -15.16183 -14.94080 -14.44506 -14.19237 -13.74340 -13.58649 -13.34502 -13.11666 -12.80542 -12.44244 -12.37410 -12.18968 -12.06697 -11.87509 -11.65924 -11.52688 -11.28226 -11.04750 -10.74179 -10.61255 -10.21295 -10.19539 -9.97934 -9.93440 -9.76802 -9.58673 -9.56820 -8.55841 -8.48853 -7.90761 -6.82374 -5.99038 -3.39314 0.65101 1.04348 1.80008 2.08243 2.59849 3.03809 3.29864 3.48253 3.54162 3.63313 4.28319 4.52354 4.54219 4.73366 4.83413 5.00730 5.11561 5.18883 5.33378 5.48818 5.54326 5.61627 5.79100 5.95234 6.00378 6.03677 6.25018 6.26451 6.31930 6.35143 6.43047 6.50568 6.59573 6.62208 6.67690 6.86024 7.06455 7.11314 7.14948 7.56859 7.98985 8.06798 8.41464 8.99675 9.72102 10.15354 11.16056 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004732 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.005954 B = 5915.718380 C = 6812.806893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 N -0.594 5.594 4 C -0.261 4.261 5 H 0.077 0.923 6 C 0.045 3.955 7 N -0.895 5.895 8 Si 0.859 3.141 9 H -0.284 1.284 10 H -0.301 1.301 11 H -0.265 1.265 12 C 0.203 3.797 13 C -0.184 4.184 14 C 0.133 3.867 15 C -0.067 4.067 16 N -0.282 5.282 17 N -0.335 5.335 18 C 0.380 3.620 19 C -0.163 4.163 20 C -0.055 4.055 21 C -0.193 4.193 22 C 0.130 3.870 23 N -0.497 5.497 24 C 0.131 3.869 25 Cl 0.005 6.995 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -8.835 13.726 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 N -0.316 5.316 4 C -0.389 4.389 5 H 0.094 0.906 6 C -0.156 4.156 7 N -0.536 5.536 8 Si 0.689 3.311 9 H -0.212 1.212 10 H -0.229 1.229 11 H -0.189 1.189 12 C 0.076 3.924 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.126 4.126 16 N -0.103 5.103 17 N -0.116 5.116 18 C 0.152 3.848 19 C -0.186 4.186 20 C -0.081 4.081 21 C -0.214 4.214 22 C -0.028 4.028 23 N -0.209 5.209 24 C -0.017 4.017 25 Cl 0.033 6.967 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.884 -8.684 14.062 18.311 hybrid contribution -0.759 0.171 0.392 0.871 sum 7.125 -8.513 14.454 18.225 Atomic orbital electron populations 1.22319 0.99623 0.99168 1.01588 1.20946 0.91710 0.86437 0.99323 1.44155 1.74653 1.11374 1.01385 1.18761 1.34264 0.93994 0.91901 0.90550 1.25379 0.97315 0.96745 0.96121 1.69863 1.40341 1.07606 1.35789 0.87232 0.84906 0.79160 0.79830 1.21166 1.22916 1.18918 1.19655 0.87277 0.97483 0.87962 1.21072 1.01098 0.95749 1.01815 1.22509 0.89444 0.97089 0.94462 1.20312 1.03005 0.90608 0.98672 1.77509 1.21723 0.97174 1.13898 1.45687 1.04634 1.22321 1.38949 1.17748 0.87531 0.90244 0.89258 1.21688 0.92507 1.01676 1.02703 1.21490 1.00426 0.93149 0.93077 1.22112 0.96400 1.02539 1.00362 1.22526 0.90765 0.93621 0.95922 1.67097 1.40903 1.08607 1.04342 1.21577 0.83535 0.95195 1.01375 1.98361 1.64050 1.49069 1.85231 0.92552 0.94346 0.94003 0.93128 0.94135 0.92741 0.93061 0.91538 0.87849 0.90017 0.91900 0.83648 0.84091 0.84355 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 37.16 0.38 -2.73 16 2 C 0.14 2.87 6.39 -4.04 -0.03 2.84 16 3 N -0.59 -13.73 2.04 -174.61 -0.36 -14.09 16 4 C -0.26 -6.84 9.89 -15.06 -0.15 -6.99 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 6 C 0.05 1.19 5.20 -17.43 -0.09 1.10 16 7 N -0.90 -24.97 13.97 55.49 0.78 -24.20 16 8 Si 0.86 20.86 24.75 -169.99 -4.21 16.66 16 9 H -0.28 -6.62 6.69 56.52 0.38 -6.25 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.20 4.44 4.63 -5.20 -0.02 4.41 16 13 C -0.18 -3.85 5.69 -104.99 -0.60 -4.45 16 14 C 0.13 2.75 7.21 -82.39 -0.59 2.16 16 15 C -0.07 -1.32 10.26 36.00 0.37 -0.95 16 16 N -0.28 -5.59 12.10 33.68 0.41 -5.18 16 17 N -0.34 -6.38 3.78 -9.27 -0.04 -6.42 16 18 C 0.38 6.18 7.38 -154.38 -1.14 5.04 16 19 C -0.16 -2.18 9.74 -39.25 -0.38 -2.56 16 20 C -0.06 -0.53 10.17 -39.30 -0.40 -0.93 16 21 C -0.19 -1.67 10.11 -39.42 -0.40 -2.06 16 22 C 0.13 1.37 11.18 -17.57 -0.20 1.18 16 23 N -0.50 -7.36 8.65 -12.29 -0.11 -7.46 16 24 C 0.13 2.56 7.38 -16.76 -0.12 2.44 16 25 Cl 0.00 0.08 25.72 -51.86 -1.33 -1.25 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16 30 H 0.04 0.77 6.42 -51.93 -0.33 0.43 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.05 1.05 7.85 -51.93 -0.41 0.64 16 33 H 0.07 1.54 2.49 -51.92 -0.13 1.41 16 34 H 0.10 2.23 8.14 -51.93 -0.42 1.81 16 35 H 0.08 1.69 6.84 -51.93 -0.36 1.34 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.15 1.94 7.91 -52.49 -0.41 1.53 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -29.89 348.13 -8.00 -37.89 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.02 Total: 0.32 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.37 Total: -1.51 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.68 Total: -57.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.21 Total: 16.66 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.33 Total: -1.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.89 -8.00 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288959867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.448 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds