Wall clock time and date at job start Tue Mar 31 2020 13:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47084 * 2 1 4 4 C 1.36939 * 120.00098 * 267.11513 * 3 2 1 5 5 H 1.07995 * 119.99835 * 321.39655 * 4 3 2 6 6 C 1.38814 * 119.99873 * 141.39356 * 4 3 2 7 7 N 1.31616 * 119.99901 * 158.04669 * 6 4 3 8 8 Si 1.86796 * 120.00062 * 338.04419 * 6 4 3 9 9 H 1.48503 * 109.47353 * 95.63981 * 8 6 4 10 10 H 1.48500 * 109.47277 * 215.63931 * 8 6 4 11 11 H 1.48497 * 109.47460 * 335.63808 * 8 6 4 12 12 C 1.46497 * 119.99675 * 87.11340 * 3 2 1 13 13 C 1.50695 * 109.47393 * 90.00412 * 12 3 2 14 14 C 1.39937 * 126.02626 * 89.99288 * 13 12 3 15 15 C 1.50698 * 125.80883 * 0.04067 * 14 13 12 16 16 N 1.30821 * 108.38891 * 180.02562 * 14 13 12 17 17 N 1.40092 * 108.28357 * 0.02562 * 16 14 13 18 18 C 1.39810 * 126.10278 * 179.97438 * 17 16 14 19 19 C 1.38946 * 119.68719 * 335.02823 * 18 17 16 20 20 C 1.38416 * 119.10639 * 180.24695 * 19 18 17 21 21 C 1.38809 * 118.48156 * 359.53212 * 20 19 18 22 22 C 1.38114 * 119.29091 * 0.42603 * 21 20 19 23 23 N 1.31894 * 120.84547 * 359.81421 * 22 21 20 24 24 C 1.35428 * 126.02411 * 270.33183 * 13 12 3 25 25 Cl 1.73595 * 126.20937 * 359.94864 * 24 13 12 26 26 H 1.09001 * 109.47529 * 59.99918 * 1 2 3 27 27 H 1.09001 * 109.46804 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47011 * 299.99488 * 1 2 3 29 29 H 1.09001 * 109.47011 * 240.00512 * 2 1 3 30 30 H 1.09001 * 109.47529 * 120.00082 * 2 1 3 31 31 H 0.97006 * 120.00116 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47760 * 330.00099 * 12 3 2 33 33 H 1.09009 * 109.47101 * 210.00291 * 12 3 2 34 34 H 1.09001 * 109.47348 * 270.02169 * 15 14 13 35 35 H 1.08998 * 109.47114 * 30.02618 * 15 14 13 36 36 H 1.09006 * 109.47312 * 150.02138 * 15 14 13 37 37 H 1.07997 * 120.44929 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.76066 * 179.74809 * 20 19 18 39 39 H 1.07997 * 120.35113 * 180.22144 * 21 20 19 40 40 H 1.08002 * 119.57717 * 179.79148 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3028 2.0069 -1.1844 5 1 2.7708 1.4564 -1.9871 6 6 1.9896 3.3486 -1.3533 7 7 2.6164 4.0610 -2.2654 8 14 0.6784 4.1432 -0.2862 9 1 1.3224 4.8183 0.8691 10 1 -0.0734 5.1424 -1.0873 11 1 -0.2564 3.1006 0.2080 12 6 2.2022 2.0931 1.2671 13 6 3.6031 1.8643 1.7732 14 6 4.7217 2.6539 1.4843 15 6 4.7321 3.8828 0.6122 16 7 5.7570 2.1440 2.1005 17 7 5.3343 1.0090 2.8046 18 6 6.1399 0.1800 3.5910 19 6 7.5043 0.1063 3.3390 20 6 8.2897 -0.7223 4.1216 21 6 7.6812 -1.4435 5.1396 22 6 6.3193 -1.3205 5.3339 23 7 5.5959 -0.5265 4.5686 24 6 4.0026 0.8546 2.5825 25 17 2.9955 -0.4057 3.2234 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.3978 4.9987 -2.3832 32 1 1.4860 1.7215 2.0000 33 1 2.0420 3.1600 1.1111 34 1 4.9347 3.5946 -0.4193 35 1 3.7616 4.3759 0.6677 36 1 5.5075 4.5668 0.9573 37 1 7.9454 0.6842 2.5404 38 1 9.3524 -0.8031 3.9465 39 1 8.2658 -2.0962 5.7708 40 1 5.8405 -1.8821 6.1225 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288959867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:49 Heat of formation + Delta-G solvation = 128.445723 kcal Electronic energy + Delta-G solvation = -24990.220578 eV Core-core repulsion = 21447.469020 eV Total energy + Delta-G solvation = -3542.751558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.73763 -40.96109 -38.06934 -37.81206 -35.20549 -33.92164 -33.58562 -32.43434 -31.84670 -30.44836 -28.87914 -27.31334 -25.54599 -24.62169 -24.05040 -22.14463 -21.84836 -20.78343 -19.56569 -18.57997 -17.53400 -17.21640 -17.05273 -16.62326 -16.24018 -15.92571 -15.50860 -15.27914 -14.98388 -14.84791 -14.44892 -14.20127 -14.04536 -13.88069 -13.76814 -13.54455 -13.30694 -13.07183 -12.98250 -12.82679 -12.55297 -12.53846 -12.21315 -12.00352 -11.74195 -11.50088 -11.48219 -11.12615 -10.94281 -10.59257 -10.51393 -9.92077 -9.27166 -8.70974 -8.06983 -5.45280 -0.42397 0.19596 0.37897 0.78471 1.30531 1.34641 1.45461 1.50371 1.58408 2.50680 2.69353 3.18640 3.23086 3.46707 3.52330 3.87908 3.97691 3.98012 4.01653 4.15115 4.28079 4.41470 4.47800 4.63214 4.69785 4.75914 4.77511 4.82647 4.88652 4.92044 5.02936 5.06641 5.08058 5.16519 5.26014 5.44587 5.50342 5.55339 5.89871 6.05721 6.26074 6.30685 6.84468 7.07241 7.71936 8.17614 9.11667 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004732 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.005954 B = 5915.718380 C = 6812.806893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 N -0.604 5.604 4 C -0.251 4.251 5 H 0.036 0.964 6 C 0.014 3.986 7 N -0.931 5.931 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.310 1.310 11 H -0.258 1.258 12 C 0.209 3.791 13 C -0.212 4.212 14 C 0.111 3.889 15 C -0.054 4.054 16 N -0.286 5.286 17 N -0.331 5.331 18 C 0.328 3.672 19 C -0.173 4.173 20 C -0.049 4.049 21 C -0.164 4.164 22 C 0.120 3.880 23 N -0.520 5.520 24 C 0.134 3.866 25 Cl 0.026 6.974 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -11.115 17.022 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 N -0.326 5.326 4 C -0.381 4.381 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.574 5.574 8 Si 0.735 3.265 9 H -0.198 1.198 10 H -0.239 1.239 11 H -0.182 1.182 12 C 0.082 3.918 13 C -0.226 4.226 14 C -0.056 4.056 15 C -0.113 4.113 16 N -0.109 5.109 17 N -0.112 5.112 18 C 0.104 3.896 19 C -0.196 4.196 20 C -0.075 4.075 21 C -0.184 4.184 22 C -0.038 4.038 23 N -0.233 5.233 24 C -0.016 4.016 25 Cl 0.054 6.946 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.196 0.804 39 H 0.203 0.797 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.884 -10.994 17.397 22.416 hybrid contribution -0.846 0.604 -0.435 1.127 sum 8.038 -10.390 16.962 21.454 Atomic orbital electron populations 1.22202 0.97822 1.01085 1.00691 1.21047 0.93108 0.84960 0.99566 1.44221 1.75253 1.12230 1.00869 1.18476 1.33389 0.93929 0.92303 0.94602 1.25675 0.98465 0.97005 0.97261 1.69958 1.41724 1.07869 1.37859 0.86449 0.82732 0.78385 0.78889 1.19764 1.23921 1.18198 1.19536 0.88354 0.96438 0.87458 1.20924 1.00731 0.97202 1.03763 1.22557 0.89846 0.97716 0.95469 1.20106 1.02997 0.90987 0.97168 1.77397 1.21651 0.97780 1.14026 1.45895 1.04744 1.22005 1.38569 1.18059 0.88282 0.92231 0.91027 1.21812 0.91791 1.02606 1.03358 1.21970 1.01905 0.91482 0.92093 1.22656 0.95783 1.00849 0.99113 1.23261 0.91998 0.92813 0.95754 1.67028 1.42342 1.09312 1.04668 1.21684 0.84268 0.95093 1.00565 1.98353 1.63386 1.47973 1.84841 0.94453 0.91039 0.93778 0.94084 0.92666 0.92832 0.91620 0.93037 0.90577 0.91424 0.89377 0.84712 0.80382 0.79693 0.78741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 10.24 71.98 0.74 -4.93 16 2 C 0.14 5.56 6.39 86.38 0.55 6.11 16 3 N -0.60 -28.34 2.04 -706.35 -1.44 -29.78 16 4 C -0.25 -13.74 9.89 84.03 0.83 -12.91 16 5 H 0.04 2.23 8.06 -2.91 -0.02 2.20 16 6 C 0.01 0.77 5.20 84.86 0.44 1.21 16 7 N -0.93 -54.09 13.97 21.65 0.30 -53.79 16 8 Si 0.91 43.76 24.75 68.60 1.70 45.46 16 9 H -0.27 -12.40 6.69 99.48 0.67 -11.73 16 10 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 11 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.21 9.15 4.63 85.63 0.40 9.54 16 13 C -0.21 -9.06 5.69 -20.10 -0.11 -9.17 16 14 C 0.11 4.75 7.21 43.12 0.31 5.06 16 15 C -0.05 -2.22 10.26 71.24 0.73 -1.48 16 16 N -0.29 -11.61 12.10 -47.35 -0.57 -12.18 16 17 N -0.33 -12.67 3.78 -183.24 -0.69 -13.36 16 18 C 0.33 10.38 7.38 132.77 0.98 11.36 16 19 C -0.17 -4.37 9.74 22.48 0.22 -4.15 16 20 C -0.05 -0.74 10.17 22.45 0.23 -0.51 16 21 C -0.16 -1.96 10.11 22.38 0.23 -1.73 16 22 C 0.12 2.06 11.18 84.65 0.95 3.00 16 23 N -0.52 -14.35 8.65 -192.81 -1.67 -16.02 16 24 C 0.13 5.23 7.38 83.42 0.62 5.85 16 25 Cl 0.03 0.86 25.72 -2.72 -0.07 0.79 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.70 8.02 -2.39 -0.02 1.69 16 30 H 0.06 2.04 6.42 -2.39 -0.02 2.02 16 31 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 32 H 0.07 2.63 7.85 -2.39 -0.02 2.61 16 33 H 0.05 2.40 2.49 -2.38 -0.01 2.40 16 34 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.07 2.92 6.84 -2.39 -0.02 2.91 16 36 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 37 H 0.13 3.59 7.91 -2.91 -0.02 3.56 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -68.58 348.13 5.67 -62.90 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.02 Total: 8.72 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 7.10 Total: 7.25 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -4.07 Total: -125.12 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.70 Total: 45.46 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.07 Total: 0.79 kcal Total: -68.58 5.67 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288959867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.348 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds