Wall clock time and date at job start Tue Mar 31 2020 12:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00141 * 2 1 4 4 N 1.46492 * 109.47314 * 125.00080 * 3 2 1 5 5 C 1.46508 * 119.99926 * 269.99560 * 4 3 2 6 6 C 1.50694 * 109.47280 * 269.99990 * 5 4 3 7 7 H 1.08000 * 120.00377 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99966 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00086 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00028 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47162 * 89.99691 * 10 8 6 12 12 H 1.48499 * 109.47405 * 209.99609 * 10 8 6 13 13 H 1.48501 * 109.47029 * 329.99990 * 10 8 6 14 14 C 1.34776 * 120.00129 * 89.99908 * 4 3 2 15 15 O 1.21282 * 119.99983 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00037 * 0.02562 * 14 4 3 17 17 O 1.42909 * 109.47245 * 180.02562 * 16 14 4 18 18 C 1.35897 * 117.00046 * 180.02562 * 17 16 14 19 19 C 1.38727 * 120.05648 * 179.97438 * 18 17 16 20 20 C 1.38146 * 119.94819 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.05197 * 0.03048 * 20 19 18 22 22 N 1.48007 * 119.94459 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99745 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00052 * 179.72330 * 22 21 20 25 25 C 1.38267 * 120.11170 * 0.24436 * 21 20 19 26 26 C 1.38145 * 120.05652 * 359.45728 * 25 21 20 27 27 H 1.08006 * 120.00134 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99800 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99800 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47054 * 4.99693 * 3 2 1 31 31 H 1.09003 * 109.47188 * 245.00139 * 3 2 1 32 32 H 1.09000 * 109.46630 * 30.00468 * 5 4 3 33 33 H 1.09002 * 109.46940 * 150.00187 * 5 4 3 34 34 H 0.96997 * 120.00449 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47151 * 60.00019 * 16 14 4 36 36 H 1.08997 * 109.47073 * 299.99580 * 16 14 4 37 37 H 1.08002 * 120.02536 * 0.02562 * 19 18 17 38 38 H 1.07994 * 119.97339 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.97348 * 179.73305 * 25 21 20 40 40 H 1.08000 * 120.03074 * 180.25062 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5185 4.0668 3.6080 9 7 2.7671 5.3573 3.6563 10 14 1.7239 3.2136 5.0675 11 1 2.7799 2.7234 5.9894 12 1 0.8471 4.1736 5.7850 13 1 0.9131 2.0654 4.5883 14 6 4.2496 0.8661 0.9823 15 8 5.0199 0.8887 1.9189 16 6 4.6972 0.3183 -0.3483 17 8 6.0572 -0.1103 -0.2539 18 6 6.6185 -0.6333 -1.3756 19 6 7.9355 -1.0689 -1.3553 20 6 8.5040 -1.5997 -2.4970 21 6 7.7617 -1.6965 -3.6595 22 7 8.3734 -2.2650 -4.8814 23 8 9.5299 -2.6468 -4.8625 24 8 7.7189 -2.3554 -5.9046 25 6 6.4507 -1.2578 -3.6839 26 6 5.8757 -0.7319 -2.5432 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6967 2.5459 33 1 3.0990 1.3604 3.2259 34 1 2.5383 5.8661 4.4498 35 1 4.6126 1.0952 -1.1081 36 1 4.0681 -0.5285 -0.6227 37 1 8.5158 -0.9931 -0.4476 38 1 9.5293 -1.9386 -2.4817 39 1 5.8743 -1.3304 -4.5943 40 1 4.8504 -0.3931 -2.5616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293702559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:35 Heat of formation + Delta-G solvation = -15.758002 kcal Electronic energy + Delta-G solvation = -25762.406936 eV Core-core repulsion = 21740.400319 eV Total energy + Delta-G solvation = -4022.006617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36093 -40.87559 -39.39822 -37.82629 -36.74147 -36.00781 -33.39478 -32.35591 -32.02113 -31.54355 -29.71590 -27.70334 -26.22999 -25.74553 -23.75557 -22.75340 -22.09533 -20.31139 -19.67028 -19.06438 -18.76911 -18.66597 -17.70908 -17.12836 -16.92527 -16.55699 -16.18259 -15.69736 -15.27403 -14.89999 -14.52836 -14.31643 -14.25951 -13.92572 -13.60995 -13.37088 -12.98531 -12.81387 -12.45669 -12.01958 -11.86045 -11.80813 -11.70315 -11.62304 -11.39844 -11.33266 -11.31429 -11.10343 -10.65726 -10.28612 -9.90949 -9.71849 -9.50120 -9.35462 -9.15107 -8.70714 -8.04193 -6.20524 -4.20963 -0.36803 0.50271 1.11069 1.21153 2.09511 2.37699 2.86974 2.92184 3.20490 3.26312 3.28763 3.66577 3.94373 4.04503 4.22770 4.28704 4.45436 4.56631 4.64176 4.77721 4.78729 4.96482 5.09237 5.10253 5.13370 5.21354 5.28792 5.34902 5.52131 5.72499 5.74254 5.88734 6.16083 6.44296 6.50064 6.62297 6.67397 6.76713 7.06652 7.45244 7.45496 7.87984 8.30557 8.59008 8.81300 9.38443 10.92527 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.002576 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.564398 B =10864.866850 C =11663.931447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.179 4.179 3 C 0.132 3.868 4 N -0.582 5.582 5 C 0.219 3.781 6 C -0.535 4.535 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.510 3.490 15 O -0.512 6.512 16 C 0.034 3.966 17 O -0.271 6.271 18 C 0.193 3.807 19 C -0.150 4.150 20 C -0.013 4.013 21 C -0.093 4.093 22 N 0.038 4.962 23 O -0.169 6.169 24 O -0.170 6.170 25 C -0.009 4.009 26 C -0.215 4.215 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -14.151 -13.810 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C 0.008 3.992 4 N -0.314 5.314 5 C 0.100 3.900 6 C -0.573 4.573 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.532 5.532 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.190 1.190 14 C 0.295 3.705 15 O -0.387 6.387 16 C -0.045 4.045 17 O -0.180 6.180 18 C 0.144 3.856 19 C -0.169 4.169 20 C -0.032 4.032 21 C -0.177 4.177 22 N 0.554 4.446 23 O -0.383 6.383 24 O -0.384 6.384 25 C -0.028 4.028 26 C -0.234 4.234 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.035 -13.632 -12.367 18.518 hybrid contribution -0.554 -0.379 0.272 0.724 sum 1.481 -14.011 -12.094 18.568 Atomic orbital electron populations 1.23899 0.95811 1.02118 0.99269 1.23403 0.96580 0.98743 1.01081 1.20702 0.93373 0.95967 0.89150 1.47838 1.09838 1.60187 1.13573 1.19735 0.95140 0.95301 0.79869 1.21270 1.41783 0.90925 1.03323 0.90666 1.24839 0.95145 0.94719 0.98125 1.69882 1.47334 1.06602 1.29362 0.86870 0.79918 0.79697 0.83344 1.19801 1.20927 1.19013 1.19580 0.82934 0.79622 0.88395 1.90752 1.52006 1.54818 1.41081 1.22935 0.80972 1.00853 0.99713 1.86279 1.27556 1.73141 1.31059 1.19525 0.92483 0.87954 0.85654 1.20503 0.93203 1.03402 0.99776 1.20833 1.00660 0.92678 0.89048 1.20962 0.96186 1.13958 0.86611 1.43520 1.00599 0.98153 1.02283 1.94533 1.01651 1.50932 1.91229 1.94530 1.62469 1.60186 1.21260 1.20803 0.91655 0.90779 0.99538 1.21345 1.02282 1.07755 0.92013 0.88510 0.87991 0.87702 0.88523 0.90660 0.94735 0.94358 0.92389 0.88461 0.88743 0.82359 0.82261 0.82634 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 14.32 29.02 0.42 -1.31 16 2 C -0.18 -1.94 9.74 -36.03 -0.35 -2.29 16 3 C 0.13 1.71 5.65 -5.20 -0.03 1.68 16 4 N -0.58 -10.54 2.44 -176.44 -0.43 -10.97 16 5 C 0.22 4.97 4.23 -5.19 -0.02 4.95 16 6 C -0.53 -14.50 9.94 -34.44 -0.34 -14.84 16 7 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 10 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 14 C 0.51 9.25 7.75 -10.99 -0.09 9.17 16 15 O -0.51 -11.90 16.08 -14.35 -0.23 -12.13 16 16 C 0.03 0.40 3.77 36.00 0.14 0.54 16 17 O -0.27 -3.56 9.67 -39.33 -0.38 -3.94 16 18 C 0.19 1.94 6.69 -39.22 -0.26 1.68 16 19 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 20 C -0.01 -0.11 9.55 -39.61 -0.38 -0.49 16 21 C -0.09 -0.92 6.85 -79.93 -0.55 -1.46 16 22 N 0.04 0.45 4.45 33.97 0.15 0.60 16 23 O -0.17 -2.13 18.44 -29.46 -0.54 -2.68 16 24 O -0.17 -2.14 18.44 -29.46 -0.54 -2.68 16 25 C -0.01 -0.07 9.55 -39.60 -0.38 -0.45 16 26 C -0.21 -1.70 9.04 -39.43 -0.36 -2.06 16 27 H 0.10 0.82 8.06 -52.48 -0.42 0.39 16 28 H 0.10 1.01 7.84 -52.49 -0.41 0.60 16 29 H 0.10 1.02 7.83 -52.49 -0.41 0.61 16 30 H 0.10 1.34 7.72 -51.93 -0.40 0.94 16 31 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.10 0.92 6.92 -51.93 -0.36 0.56 16 36 H 0.09 0.80 7.30 -51.93 -0.38 0.43 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.16 1.09 7.60 -52.49 -0.40 0.69 16 39 H 0.16 1.02 7.61 -52.49 -0.40 0.62 16 40 H 0.15 0.84 6.30 -52.49 -0.33 0.51 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -34.53 356.27 -7.78 -42.31 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.59 Total: -1.41 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.69 Total: -4.64 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.49 Total: -36.20 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.70 Total: -21.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.53 -7.78 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293702559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.550 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds