Wall clock time and date at job start Tue Mar 31 2020 13:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47548 * 2 1 4 4 C 1.36930 * 120.00073 * 267.14333 * 3 2 1 5 5 H 1.08004 * 119.99944 * 324.81373 * 4 3 2 6 6 C 1.38815 * 120.00525 * 144.82260 * 4 3 2 7 7 N 1.31626 * 119.99599 * 338.31204 * 6 4 3 8 8 Si 1.86797 * 120.00300 * 158.31626 * 6 4 3 9 9 H 1.48497 * 109.47472 * 89.99991 * 8 6 4 10 10 H 1.48507 * 109.46885 * 209.99914 * 8 6 4 11 11 H 1.48494 * 109.47076 * 329.99593 * 8 6 4 12 12 C 1.46507 * 119.99743 * 87.13268 * 3 2 1 13 13 C 1.50699 * 109.46559 * 90.00941 * 12 3 2 14 14 N 1.30605 * 126.27516 * 269.96737 * 13 12 3 15 15 N 1.28540 * 110.06185 * 180.02562 * 14 13 12 16 16 C 1.31455 * 109.72332 * 0.02562 * 15 14 13 17 17 C 1.47925 * 126.50982 * 179.97438 * 16 15 14 18 18 C 1.39534 * 120.12276 * 151.19897 * 17 16 15 19 19 C 1.37939 * 119.86955 * 179.81365 * 18 17 16 20 20 C 1.38467 * 120.12866 * 0.44628 * 19 18 17 21 21 Cl 1.73601 * 119.87383 * 179.76727 * 20 19 18 22 22 C 1.38476 * 120.25492 * 359.78433 * 20 19 18 23 23 C 1.37940 * 120.12271 * 0.02562 * 22 20 19 24 24 N 1.36100 * 126.28421 * 90.00003 * 13 12 3 25 25 C 1.46500 * 127.09787 * 0.23646 * 24 13 12 26 26 H 1.09000 * 109.47131 * 299.99847 * 1 2 3 27 27 H 1.09002 * 109.46699 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47425 * 239.99693 * 2 1 3 30 30 H 1.09002 * 109.46699 * 120.00021 * 2 1 3 31 31 H 0.96993 * 119.99686 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47263 * 330.00453 * 12 3 2 33 33 H 1.09007 * 109.46945 * 210.00121 * 12 3 2 34 34 H 1.08003 * 120.06256 * 0.02562 * 18 17 16 35 35 H 1.08010 * 119.93408 * 180.18522 * 19 18 17 36 36 H 1.07994 * 119.93536 * 179.97438 * 22 20 19 37 37 H 1.08000 * 120.06189 * 179.97438 * 23 22 20 38 38 H 1.08994 * 109.47055 * 266.28644 * 25 24 13 39 39 H 1.08997 * 109.47563 * 26.29623 * 25 24 13 40 40 H 1.09008 * 109.46392 * 146.29280 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3024 2.0069 -1.1844 5 1 2.7192 1.4437 -2.0063 6 6 2.0549 3.3652 -1.3286 7 7 1.1862 3.9631 -0.5409 8 14 2.9545 4.3444 -2.6406 9 1 2.1700 4.3206 -3.9012 10 1 3.1175 5.7486 -2.1855 11 1 4.2912 3.7427 -2.8779 12 6 2.2028 2.0929 1.2672 13 6 3.6040 1.8639 1.7726 14 7 3.9937 0.8958 2.5579 15 7 5.2532 0.9986 2.7929 16 6 5.7376 2.0469 2.1648 17 6 7.1424 2.5101 2.1793 18 6 7.6626 3.2027 1.0854 19 6 8.9722 3.6356 1.1060 20 6 9.7728 3.3759 2.2056 21 17 11.4218 3.9185 2.2220 22 6 9.2633 2.6848 3.2920 23 6 7.9541 2.2505 3.2841 24 7 4.6953 2.6282 1.4948 25 6 4.7431 3.8292 0.6572 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.0130 4.9121 -0.6420 32 1 1.4868 1.7212 2.0002 33 1 2.0427 3.1598 1.1114 34 1 7.0402 3.4025 0.2257 35 1 9.3751 4.1744 0.2611 36 1 9.8924 2.4847 4.1467 37 1 7.5579 1.7112 4.1318 38 1 5.0179 3.5517 -0.3604 39 1 3.7637 4.3075 0.6515 40 1 5.4834 4.5220 1.0574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352073550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:34 Heat of formation + Delta-G solvation = 113.849681 kcal Electronic energy + Delta-G solvation = -24581.550533 eV Core-core repulsion = 21038.166043 eV Total energy + Delta-G solvation = -3543.384490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33161 -39.27951 -36.68621 -36.20652 -34.46732 -32.24336 -32.04340 -31.28171 -30.00142 -28.44924 -27.23783 -25.98542 -23.78091 -23.44227 -22.85875 -20.96051 -20.56742 -19.72907 -17.50595 -17.04573 -16.43629 -15.90549 -15.60183 -15.20333 -14.92654 -14.27034 -14.01603 -13.88737 -13.85218 -13.66973 -13.46624 -12.97267 -12.72305 -12.46893 -12.06816 -11.82625 -11.74228 -11.64723 -11.35739 -11.22031 -11.08721 -10.99090 -10.83672 -10.71278 -10.39583 -10.28766 -9.89576 -9.77582 -9.61824 -9.30946 -9.25633 -8.79872 -8.03239 -6.92726 -6.10218 -3.62914 0.67272 1.09767 1.90095 2.42037 2.95008 3.10347 3.20009 3.22194 3.31542 3.67393 4.21558 4.35708 4.58536 4.66650 4.95491 5.02954 5.06892 5.16750 5.34703 5.41090 5.47968 5.54209 5.67886 5.78698 5.85473 5.91308 6.00568 6.09214 6.16645 6.38372 6.44334 6.48609 6.51939 6.65885 6.71583 6.73671 6.92175 7.13865 7.26246 7.44243 7.57259 8.21428 8.87461 9.31742 9.50090 10.09581 10.91718 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003793 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.106156 B = 7379.315925 C = 8668.409638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 N -0.570 5.570 4 C -0.256 4.256 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.884 5.884 8 Si 0.880 3.120 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.211 3.789 13 C 0.213 3.787 14 N -0.316 5.316 15 N -0.279 5.279 16 C 0.167 3.833 17 C 0.014 3.986 18 C -0.101 4.101 19 C -0.106 4.106 20 C -0.033 4.033 21 Cl -0.074 7.074 22 C -0.108 4.108 23 C -0.071 4.071 24 N -0.457 5.457 25 C 0.074 3.926 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 2.499 4.488 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 N -0.289 5.289 4 C -0.386 4.386 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.526 5.526 8 Si 0.708 3.292 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.081 3.919 13 C -0.057 4.057 14 N -0.158 5.158 15 N -0.121 5.121 16 C -0.097 4.097 17 C 0.011 3.989 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.061 4.061 21 Cl -0.045 7.045 22 C -0.126 4.126 23 C -0.091 4.091 24 N -0.147 5.147 25 C -0.069 4.069 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.849 1.481 5.299 13.977 hybrid contribution 0.655 1.779 -1.732 2.568 sum 13.503 3.260 3.567 14.342 Atomic orbital electron populations 1.22222 0.99070 0.98766 1.01896 1.20957 0.92192 0.86402 0.99045 1.43778 1.73282 1.10583 1.01231 1.19144 1.35559 0.92089 0.91805 0.91879 1.25084 0.97118 0.98618 0.97945 1.69942 1.31339 1.10921 1.40411 0.86690 0.80410 0.79627 0.82497 1.20706 1.20827 1.20153 1.19714 0.82304 1.02820 0.87107 1.27538 0.94436 0.88697 0.94983 1.74157 1.03734 1.20604 1.17261 1.74357 1.03642 1.14232 1.19863 1.22515 0.90133 0.96461 1.00608 1.17587 0.88371 0.98079 0.94872 1.21343 0.95153 0.97616 0.98004 1.20911 0.93147 1.00769 0.97616 1.21025 0.86252 1.01805 0.96990 1.98367 1.18743 1.88796 1.98614 1.20979 0.95605 0.98281 0.97774 1.21162 0.92267 0.97897 0.97794 1.46327 1.07928 1.23367 1.37072 1.22212 1.05523 0.84647 0.94481 0.93609 0.92679 0.94721 0.93723 0.93885 0.93078 0.91533 0.86387 0.84661 0.84498 0.84413 0.83884 0.90041 0.87744 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 37.16 0.38 -2.69 16 2 C 0.14 2.91 6.39 -4.04 -0.03 2.89 16 3 N -0.57 -13.14 2.43 -174.60 -0.42 -13.56 16 4 C -0.26 -6.27 9.47 -15.06 -0.14 -6.41 16 5 H 0.06 1.59 7.92 -52.48 -0.42 1.18 16 6 C 0.01 0.29 4.33 -17.43 -0.08 0.22 16 7 N -0.88 -21.83 11.32 55.49 0.63 -21.20 16 8 Si 0.88 18.57 28.95 -169.99 -4.92 13.65 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.21 4.64 5.66 -5.19 -0.03 4.61 16 13 C 0.21 4.54 7.63 -154.36 -1.18 3.36 16 14 N -0.32 -7.04 12.19 32.92 0.40 -6.64 16 15 N -0.28 -5.82 12.17 32.51 0.40 -5.43 16 16 C 0.17 3.08 7.59 -154.24 -1.17 1.91 16 17 C 0.01 0.20 5.80 -104.97 -0.61 -0.41 16 18 C -0.10 -1.29 8.56 -39.21 -0.34 -1.63 16 19 C -0.11 -1.16 9.81 -39.61 -0.39 -1.55 16 20 C -0.03 -0.36 6.32 -39.41 -0.25 -0.61 16 21 Cl -0.07 -0.72 28.95 -51.86 -1.50 -2.22 16 22 C -0.11 -1.15 9.81 -39.60 -0.39 -1.54 16 23 C -0.07 -0.90 9.73 -39.21 -0.38 -1.28 16 24 N -0.46 -8.73 3.20 -118.25 -0.38 -9.11 16 25 C 0.07 1.23 9.16 59.85 0.55 1.78 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 30 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.26 6.19 8.31 -40.82 -0.34 5.85 16 32 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.12 2.75 4.38 -51.92 -0.23 2.52 16 34 H 0.14 1.69 5.87 -52.48 -0.31 1.38 16 35 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.08 1.36 7.14 -51.93 -0.37 0.99 16 39 H 0.10 1.87 6.59 -51.93 -0.34 1.53 16 40 H 0.08 1.02 6.99 -51.92 -0.36 0.66 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -27.29 351.01 -9.51 -36.80 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.95 Total: 3.77 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -4.05 Total: -1.35 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.62 Total: -55.94 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.92 Total: 13.65 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.29 -9.51 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352073550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.647 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds