Wall clock time and date at job start Tue Mar 31 2020 13:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47548 * 2 1 4 4 C 1.36930 * 120.00073 * 267.14333 * 3 2 1 5 5 H 1.08004 * 119.99944 * 324.81373 * 4 3 2 6 6 C 1.38815 * 120.00525 * 144.82260 * 4 3 2 7 7 N 1.31626 * 119.99599 * 338.31204 * 6 4 3 8 8 Si 1.86797 * 120.00300 * 158.31626 * 6 4 3 9 9 H 1.48497 * 109.47472 * 89.99991 * 8 6 4 10 10 H 1.48507 * 109.46885 * 209.99914 * 8 6 4 11 11 H 1.48494 * 109.47076 * 329.99593 * 8 6 4 12 12 C 1.46507 * 119.99743 * 87.13268 * 3 2 1 13 13 C 1.50699 * 109.46559 * 90.00941 * 12 3 2 14 14 N 1.30605 * 126.27516 * 269.96737 * 13 12 3 15 15 N 1.28540 * 110.06185 * 180.02562 * 14 13 12 16 16 C 1.31455 * 109.72332 * 0.02562 * 15 14 13 17 17 C 1.47925 * 126.50982 * 179.97438 * 16 15 14 18 18 C 1.39534 * 120.12276 * 151.19897 * 17 16 15 19 19 C 1.37939 * 119.86955 * 179.81365 * 18 17 16 20 20 C 1.38467 * 120.12866 * 0.44628 * 19 18 17 21 21 Cl 1.73601 * 119.87383 * 179.76727 * 20 19 18 22 22 C 1.38476 * 120.25492 * 359.78433 * 20 19 18 23 23 C 1.37940 * 120.12271 * 0.02562 * 22 20 19 24 24 N 1.36100 * 126.28421 * 90.00003 * 13 12 3 25 25 C 1.46500 * 127.09787 * 0.23646 * 24 13 12 26 26 H 1.09000 * 109.47131 * 299.99847 * 1 2 3 27 27 H 1.09002 * 109.46699 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47425 * 239.99693 * 2 1 3 30 30 H 1.09002 * 109.46699 * 120.00021 * 2 1 3 31 31 H 0.96993 * 119.99686 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47263 * 330.00453 * 12 3 2 33 33 H 1.09007 * 109.46945 * 210.00121 * 12 3 2 34 34 H 1.08003 * 120.06256 * 0.02562 * 18 17 16 35 35 H 1.08010 * 119.93408 * 180.18522 * 19 18 17 36 36 H 1.07994 * 119.93536 * 179.97438 * 22 20 19 37 37 H 1.08000 * 120.06189 * 179.97438 * 23 22 20 38 38 H 1.08994 * 109.47055 * 266.28644 * 25 24 13 39 39 H 1.08997 * 109.47563 * 26.29623 * 25 24 13 40 40 H 1.09008 * 109.46392 * 146.29280 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3024 2.0069 -1.1844 5 1 2.7192 1.4437 -2.0063 6 6 2.0549 3.3652 -1.3286 7 7 1.1862 3.9631 -0.5409 8 14 2.9545 4.3444 -2.6406 9 1 2.1700 4.3206 -3.9012 10 1 3.1175 5.7486 -2.1855 11 1 4.2912 3.7427 -2.8779 12 6 2.2028 2.0929 1.2672 13 6 3.6040 1.8639 1.7726 14 7 3.9937 0.8958 2.5579 15 7 5.2532 0.9986 2.7929 16 6 5.7376 2.0469 2.1648 17 6 7.1424 2.5101 2.1793 18 6 7.6626 3.2027 1.0854 19 6 8.9722 3.6356 1.1060 20 6 9.7728 3.3759 2.2056 21 17 11.4218 3.9185 2.2220 22 6 9.2633 2.6848 3.2920 23 6 7.9541 2.2505 3.2841 24 7 4.6953 2.6282 1.4948 25 6 4.7431 3.8292 0.6572 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.0130 4.9121 -0.6420 32 1 1.4868 1.7212 2.0002 33 1 2.0427 3.1598 1.1114 34 1 7.0402 3.4025 0.2257 35 1 9.3751 4.1744 0.2611 36 1 9.8924 2.4847 4.1467 37 1 7.5579 1.7112 4.1318 38 1 5.0179 3.5517 -0.3604 39 1 3.7637 4.3075 0.6515 40 1 5.4834 4.5220 1.0574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352073550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:33 Heat of formation + Delta-G solvation = 102.515340 kcal Electronic energy + Delta-G solvation = -24582.042027 eV Core-core repulsion = 21038.166043 eV Total energy + Delta-G solvation = -3543.875984 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.85386 -40.23975 -37.95521 -37.51936 -35.93075 -33.86048 -33.51401 -32.21908 -31.44605 -30.02324 -28.64880 -27.64761 -25.50418 -24.58887 -23.87254 -22.57421 -21.83871 -21.37234 -18.94650 -18.38681 -17.69363 -17.35606 -16.95413 -16.64683 -16.26420 -15.76253 -15.62909 -15.28500 -15.07864 -14.70501 -14.56078 -14.34300 -14.16223 -13.96958 -13.57203 -13.13819 -12.95116 -12.81874 -12.72646 -12.68139 -12.58653 -12.46488 -12.35053 -12.19370 -11.96851 -11.85497 -11.57702 -11.32876 -11.07973 -10.62882 -10.55178 -10.17242 -9.33593 -8.74082 -7.93159 -5.50458 -0.37022 0.19336 1.01262 1.04671 1.38652 1.48258 1.54225 1.57364 1.85039 2.46489 2.56607 3.10080 3.17229 3.60566 3.65989 3.77433 3.80014 3.87231 4.08114 4.15071 4.20404 4.31325 4.42658 4.47288 4.53782 4.73020 4.75935 4.84522 4.88540 4.91034 5.06112 5.09201 5.10633 5.22464 5.27293 5.36226 5.43052 5.56489 5.59128 5.68332 5.95807 6.38226 7.04669 7.69012 7.76259 8.27845 9.07640 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003793 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.106156 B = 7379.315925 C = 8668.409638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 N -0.582 5.582 4 C -0.274 4.274 5 H 0.050 0.950 6 C -0.008 4.008 7 N -0.904 5.904 8 Si 0.928 3.072 9 H -0.291 1.291 10 H -0.271 1.271 11 H -0.268 1.268 12 C 0.222 3.778 13 C 0.196 3.804 14 N -0.339 5.339 15 N -0.312 5.312 16 C 0.188 3.812 17 C -0.018 4.018 18 C -0.100 4.100 19 C -0.101 4.101 20 C -0.029 4.029 21 Cl -0.058 7.058 22 C -0.100 4.100 23 C -0.071 4.071 24 N -0.460 5.460 25 C 0.075 3.925 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.455 3.601 4.300 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 N -0.302 5.302 4 C -0.404 4.404 5 H 0.067 0.933 6 C -0.207 4.207 7 N -0.547 5.547 8 Si 0.755 3.245 9 H -0.218 1.218 10 H -0.196 1.196 11 H -0.192 1.192 12 C 0.092 3.908 13 C -0.074 4.074 14 N -0.180 5.180 15 N -0.153 5.153 16 C -0.077 4.077 17 C -0.021 4.021 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.056 4.056 21 Cl -0.029 7.029 22 C -0.119 4.119 23 C -0.091 4.091 24 N -0.149 5.149 25 C -0.067 4.067 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.181 0.819 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.401 2.575 5.124 16.434 hybrid contribution 0.040 1.459 -1.639 2.195 sum 15.442 4.034 3.485 16.336 Atomic orbital electron populations 1.22059 0.97652 1.00347 1.00501 1.21008 0.93293 0.85631 0.98837 1.43905 1.73905 1.11157 1.01200 1.19163 1.36356 0.92714 0.92153 0.93263 1.25503 0.97148 0.98746 0.99319 1.70028 1.32054 1.11045 1.41558 0.85950 0.79625 0.79046 0.79893 1.21847 1.19585 1.19241 1.19452 0.82870 1.01845 0.86640 1.27192 0.94753 0.89530 0.95956 1.74053 1.04751 1.21295 1.17944 1.74280 1.03238 1.15952 1.21824 1.23154 0.91337 0.94932 0.98256 1.17686 0.86786 1.00681 0.96911 1.21370 0.96012 0.97224 0.97358 1.21135 0.92237 1.00173 0.98372 1.21194 0.86927 1.00753 0.96735 1.98384 1.17482 1.88506 1.98558 1.21199 0.94851 0.97239 0.98566 1.21205 0.92890 0.97777 0.97198 1.46428 1.07496 1.23772 1.37245 1.22326 1.05723 0.84251 0.94371 0.94229 0.94637 0.91628 0.93955 0.93943 0.93051 0.92024 0.87559 0.84520 0.82126 0.81884 0.84054 0.90178 0.89316 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 10.24 71.98 0.74 -4.88 16 2 C 0.14 5.85 6.39 86.38 0.55 6.40 16 3 N -0.58 -27.49 2.43 -706.32 -1.71 -29.20 16 4 C -0.27 -13.64 9.47 84.04 0.80 -12.84 16 5 H 0.05 2.55 7.92 -2.91 -0.02 2.52 16 6 C -0.01 -0.40 4.33 84.86 0.37 -0.03 16 7 N -0.90 -45.04 11.32 21.65 0.25 -44.80 16 8 Si 0.93 37.64 28.95 68.60 1.99 39.62 16 9 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 12 C 0.22 10.08 5.66 85.63 0.48 10.56 16 13 C 0.20 8.57 7.63 137.76 1.05 9.62 16 14 N -0.34 -15.51 12.19 -49.76 -0.61 -16.12 16 15 N -0.31 -13.23 12.17 -51.07 -0.62 -13.85 16 16 C 0.19 6.92 7.59 136.41 1.03 7.95 16 17 C -0.02 -0.50 5.80 -20.09 -0.12 -0.62 16 18 C -0.10 -2.31 8.56 22.51 0.19 -2.12 16 19 C -0.10 -1.86 9.81 22.25 0.22 -1.65 16 20 C -0.03 -0.52 6.32 22.38 0.14 -0.38 16 21 Cl -0.06 -0.93 28.95 -2.72 -0.08 -1.01 16 22 C -0.10 -1.83 9.81 22.26 0.22 -1.61 16 23 C -0.07 -1.66 9.73 22.51 0.22 -1.44 16 24 N -0.46 -17.59 3.20 -528.03 -1.69 -19.28 16 25 C 0.08 2.42 9.16 127.77 1.17 3.59 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.78 8.02 -2.39 -0.02 1.76 16 30 H 0.04 1.78 8.09 -2.39 -0.02 1.77 16 31 H 0.26 12.43 8.31 -92.71 -0.77 11.66 16 32 H 0.06 2.77 8.07 -2.39 -0.02 2.75 16 33 H 0.11 5.09 4.38 -2.38 -0.01 5.08 16 34 H 0.14 3.10 5.87 -2.91 -0.02 3.09 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.08 2.59 7.14 -2.39 -0.02 2.57 16 39 H 0.09 3.16 6.59 -2.39 -0.02 3.15 16 40 H 0.11 2.75 6.99 -2.38 -0.02 2.73 16 Total: -1.00 -59.07 351.01 5.65 -53.42 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.06 Total: 18.66 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 7.07 Total: 12.56 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -4.39 Total: -123.26 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.99 Total: 39.62 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -59.07 5.65 -53.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352073550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.936 kcal (2) G-P(sol) polarization free energy of solvation -59.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds