Wall clock time and date at job start Tue Mar 31 2020 12:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 90.00241 * 8 6 4 10 10 H 1.48494 * 109.47178 * 209.99936 * 8 6 4 11 11 H 1.48500 * 109.47075 * 330.00183 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.30971 * 119.99818 * 120.00262 * 13 12 2 15 15 N 1.35645 * 125.43409 * 180.02562 * 14 13 12 16 16 H 0.97008 * 122.72158 * 359.96089 * 15 14 13 17 17 C 1.37221 * 114.55596 * 179.97438 * 15 14 13 18 18 C 1.47902 * 122.24787 * 180.02562 * 17 15 14 19 19 C 1.39564 * 120.11587 * 359.72395 * 18 17 15 20 20 C 1.37940 * 119.87766 * 179.76307 * 19 18 17 21 21 C 1.38569 * 120.11660 * 0.51609 * 20 19 18 22 22 F 1.35100 * 119.87597 * 179.76584 * 21 20 19 23 23 C 1.38564 * 120.23929 * 359.73558 * 21 20 19 24 24 C 1.37936 * 120.12195 * 0.02562 * 23 21 20 25 25 C 1.32574 * 115.50532 * 359.97438 * 17 15 14 26 26 S 1.75870 * 109.91050 * 359.73475 * 25 17 15 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 36 36 H 1.08001 * 120.05957 * 0.02670 * 19 18 17 37 37 H 1.07998 * 119.93804 * 180.27479 * 20 19 18 38 38 H 1.08003 * 119.94150 * 179.97438 * 23 21 20 39 39 H 1.07993 * 120.06375 * 180.02562 * 24 23 21 40 40 H 1.08002 * 125.04181 * 180.02562 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3444 -2.1615 -4.4124 10 1 2.4870 -0.1403 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 0.7989 -0.6672 3.3075 15 7 0.2878 -0.1376 4.4469 16 1 0.4478 0.7805 4.7161 17 6 -0.4735 -1.0060 5.1880 18 6 -1.1128 -0.6066 6.4605 19 6 -0.9480 0.6899 6.9503 20 6 -1.5505 1.0586 8.1351 21 6 -2.3095 0.1412 8.8441 22 9 -2.8935 0.5062 10.0064 23 6 -2.4720 -1.1488 8.3650 24 6 -1.8780 -1.5266 7.1788 25 6 -0.5984 -2.2267 4.6862 26 16 0.2811 -2.3430 3.1677 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 0.7080 1.1609 -3.4844 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2494 36 1 -0.3534 1.4044 6.4005 37 1 -1.4273 2.0628 8.5127 38 1 -3.0642 -1.8600 8.9217 39 1 -2.0056 -2.5321 6.8060 40 1 -1.1610 -3.0292 5.1401 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413411200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:56 Heat of formation + Delta-G solvation = 8.951756 kcal Electronic energy + Delta-G solvation = -23335.025316 eV Core-core repulsion = 19769.215855 eV Total energy + Delta-G solvation = -3565.809461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92531 -41.24617 -39.38160 -38.28707 -35.42200 -33.32917 -32.41768 -31.81327 -30.08345 -27.61906 -27.39847 -26.96575 -24.89074 -23.87623 -22.90744 -21.55911 -20.53526 -19.01212 -18.62787 -18.16968 -17.80807 -17.04635 -16.76397 -16.61726 -16.43355 -15.95546 -15.52400 -15.25973 -15.05450 -14.95918 -14.50015 -14.24772 -14.09517 -14.03903 -13.59570 -13.40152 -13.23511 -13.09518 -12.68139 -12.54610 -12.28306 -12.13371 -12.10292 -12.00123 -11.84031 -11.38393 -11.07490 -10.78996 -10.61237 -10.37653 -10.15769 -10.05925 -9.65111 -8.12656 -7.95371 -6.16975 -0.38485 0.22682 0.33968 0.86379 1.00189 1.43404 1.44105 1.46166 1.54176 1.79745 2.46637 2.66094 3.21233 3.23305 3.56749 3.70432 3.86014 3.89309 4.19914 4.23378 4.38799 4.61701 4.65189 4.67436 4.75927 4.83607 4.93464 4.96642 5.10621 5.12719 5.15077 5.18091 5.25667 5.34695 5.46355 5.65574 5.66725 5.73050 5.79634 6.06625 6.12100 6.25901 6.45152 6.83087 6.94150 7.50759 9.00080 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.002517 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.082530 B =11122.081461 C =11525.516143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.068 3.932 3 C -0.107 4.107 4 C -0.527 4.527 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.906 5.906 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.095 3.905 13 N -0.567 5.567 14 C 0.344 3.656 15 N -0.618 5.618 16 H 0.427 0.573 17 C 0.161 3.839 18 C -0.053 4.053 19 C -0.083 4.083 20 C -0.150 4.150 21 C 0.091 3.909 22 F -0.145 7.145 23 C -0.146 4.146 24 C -0.060 4.060 25 C -0.249 4.249 26 S -0.024 6.024 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.033 0.967 35 H 0.062 0.938 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.655 -4.387 24.200 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.067 3.933 3 C -0.165 4.165 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.177 4.177 7 N -0.545 5.545 8 Si 0.776 3.224 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.195 1.195 12 C -0.036 4.036 13 N -0.299 5.299 14 C -0.043 4.043 15 N -0.244 5.244 16 H 0.268 0.732 17 C 0.049 3.951 18 C -0.056 4.056 19 C -0.102 4.102 20 C -0.169 4.169 21 C 0.071 3.929 22 F -0.124 7.124 23 C -0.164 4.164 24 C -0.079 4.079 25 C -0.390 4.390 26 S 0.217 5.783 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.084 -4.486 22.877 24.365 hybrid contribution 0.002 0.580 -0.049 0.582 sum -7.082 -3.906 22.829 24.219 Atomic orbital electron populations 1.21529 0.98201 0.97798 0.98983 1.18128 0.92307 0.92827 0.90036 1.21489 0.97340 0.98463 0.99190 1.21376 1.31587 1.12096 0.91532 0.93209 1.25582 0.95182 0.95585 1.01341 1.69972 1.37349 1.23666 1.23473 0.85685 0.78825 0.78384 0.79493 1.20296 1.20997 1.19526 1.22026 0.98407 0.94397 0.88756 1.71623 1.19037 1.32795 1.06430 1.24376 0.96081 0.92768 0.91049 1.41394 1.48590 1.15433 1.19017 0.73219 1.17613 0.95239 0.89310 0.92916 1.18280 1.00172 0.95210 0.91937 1.21191 0.98391 0.95263 0.95384 1.21225 0.98858 1.01013 0.95781 1.18108 0.96633 0.94790 0.83369 1.91503 1.82340 1.92280 1.46263 1.21338 1.02374 0.95063 0.97624 1.21288 0.93569 1.00300 0.92763 1.24860 1.12845 1.00995 1.00261 1.85877 1.56481 1.10711 1.25267 0.96836 0.92444 0.96439 0.96536 0.92807 0.95646 0.93180 0.94877 0.91979 0.84087 0.82832 0.81882 0.81667 0.77260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 8.09 71.98 0.58 -4.91 16 2 C 0.07 3.49 0.57 -52.93 -0.03 3.46 16 3 C -0.11 -5.54 8.09 71.98 0.58 -4.96 16 4 C -0.53 -29.23 8.01 25.60 0.21 -29.02 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 6 C 0.02 1.22 5.15 84.66 0.44 1.66 16 7 N -0.91 -51.67 9.35 21.45 0.20 -51.47 16 8 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.09 4.28 5.17 86.38 0.45 4.73 16 13 N -0.57 -22.95 9.12 -348.26 -3.18 -26.13 16 14 C 0.34 11.54 8.34 179.93 1.50 13.05 16 15 N -0.62 -15.61 5.57 -187.27 -1.04 -16.65 16 16 H 0.43 9.22 7.41 -92.70 -0.69 8.53 16 17 C 0.16 3.27 6.65 39.71 0.26 3.54 16 18 C -0.05 -0.80 5.87 -20.08 -0.12 -0.92 16 19 C -0.08 -1.16 9.62 22.52 0.22 -0.94 16 20 C -0.15 -1.94 10.01 22.28 0.22 -1.71 16 21 C 0.09 1.25 7.30 22.43 0.16 1.41 16 22 F -0.15 -2.31 17.26 44.97 0.78 -1.53 16 23 C -0.15 -1.55 10.01 22.28 0.22 -1.33 16 24 C -0.06 -0.66 9.46 22.52 0.21 -0.45 16 25 C -0.25 -5.08 10.40 66.67 0.69 -4.38 16 26 S -0.02 -0.72 21.40 -56.49 -1.21 -1.93 16 27 H 0.01 0.63 7.60 -2.39 -0.02 0.61 16 28 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 3.02 6.07 -2.38 -0.01 3.00 16 32 H 0.02 1.22 7.60 -2.39 -0.02 1.20 16 33 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.03 1.48 6.20 -2.39 -0.01 1.46 16 35 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.14 1.64 6.69 -2.91 -0.02 1.62 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 39 H 0.17 0.95 6.54 -2.91 -0.02 0.93 16 40 H 0.21 2.55 6.69 -2.91 -0.02 2.53 16 Total: -1.00 -65.72 343.78 3.57 -62.15 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.40 Total: 10.50 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 5.60 Total: -20.77 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -4.02 Total: -94.24 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.21 Total: -1.93 kcal Total: -65.72 3.57 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413411200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.100 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds