Wall clock time and date at job start Tue Mar 31 2020 12:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47404 * 2 1 4 4 H 1.08998 * 109.47176 * 306.81517 * 3 2 1 5 5 C 1.50708 * 109.47357 * 186.81921 * 3 2 1 6 6 H 1.08002 * 119.99885 * 244.94208 * 5 3 2 7 7 C 1.37875 * 120.00223 * 64.93339 * 5 3 2 8 8 N 1.31513 * 120.00404 * 186.06513 * 7 5 3 9 9 Si 1.86808 * 119.99707 * 6.07093 * 7 5 3 10 10 H 1.48492 * 109.47033 * 269.99552 * 9 7 5 11 11 H 1.48504 * 109.47100 * 29.99834 * 9 7 5 12 12 H 1.48501 * 109.47086 * 149.99769 * 9 7 5 13 13 N 1.46496 * 109.47364 * 66.81935 * 3 2 1 14 14 C 1.34781 * 119.99573 * 274.99916 * 13 3 2 15 15 O 1.21360 * 119.99983 * 0.02562 * 14 13 3 16 16 C 1.49341 * 119.99831 * 179.97438 * 14 13 3 17 17 O 1.21389 * 119.99458 * 0.02562 * 16 14 13 18 18 N 1.34771 * 119.99906 * 179.97438 * 16 14 13 19 19 C 1.39895 * 120.00085 * 185.00534 * 18 16 14 20 20 C 1.38916 * 120.05048 * 29.73718 * 19 18 16 21 21 C 1.38130 * 120.05191 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.21255 * 0.02562 * 21 20 19 23 23 C 1.38642 * 120.17624 * 359.97438 * 22 21 20 24 24 C 1.39099 * 119.87626 * 359.72958 * 23 22 21 25 25 O 1.36557 * 108.67469 * 179.81098 * 24 23 22 26 26 C 1.43992 * 105.53887 * 343.13038 * 25 24 23 27 27 O 1.36523 * 131.47537 * 180.02562 * 23 22 21 28 28 H 1.08998 * 109.47731 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47063 * 300.00403 * 1 2 3 30 30 H 1.08998 * 109.47242 * 59.99873 * 1 2 3 31 31 H 1.08999 * 109.47063 * 239.99597 * 2 1 3 32 32 H 1.09006 * 109.46977 * 120.00345 * 2 1 3 33 33 H 0.97003 * 119.99673 * 354.98079 * 8 7 5 34 34 H 0.96999 * 120.00706 * 95.00154 * 13 3 2 35 35 H 0.97000 * 119.99889 * 5.00432 * 18 16 14 36 36 H 1.08000 * 119.97327 * 359.97438 * 20 19 18 37 37 H 1.07997 * 119.89229 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.91367 * 179.97438 * 22 21 20 39 39 H 1.09000 * 110.57745 * 268.29741 * 26 25 24 40 40 H 1.08994 * 110.70676 * 145.46555 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5805 1.9903 -0.8227 5 6 3.5376 1.4457 -0.1687 6 1 4.1699 1.8092 0.6278 7 6 4.1005 0.9846 -1.3398 8 7 5.4070 0.8753 -1.4431 9 14 3.0072 0.5152 -2.7800 10 1 2.6459 -0.9216 -2.6794 11 1 1.7722 1.3394 -2.7532 12 1 3.7346 0.7547 -4.0523 13 7 1.6902 2.0841 1.2697 14 6 0.4770 2.6497 1.4271 15 8 -0.3258 2.6269 0.5172 16 6 0.1202 3.3033 2.7216 17 8 0.9231 3.3256 3.6317 18 7 -1.0928 3.8693 2.8788 19 6 -1.3900 4.5722 4.0513 20 6 -0.3788 5.2208 4.7488 21 6 -0.6721 5.9144 5.9067 22 6 -1.9716 5.9660 6.3767 23 6 -2.9880 5.3221 5.6878 24 6 -2.6998 4.6271 4.5178 25 8 -3.8561 4.0835 4.0361 26 6 -4.7856 4.1176 5.1352 27 8 -4.3268 5.2229 5.9359 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.9781 1.1870 -0.7236 34 1 2.3317 2.1020 1.9970 35 1 -1.7597 3.7893 2.1790 36 1 0.6377 5.1819 4.3859 37 1 0.1161 6.4173 6.4472 38 1 -2.1955 6.5094 7.2829 39 1 -4.7413 3.1885 5.7035 40 1 -5.7991 4.2986 4.7774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439561664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:43 Heat of formation + Delta-G solvation = -96.574132 kcal Electronic energy + Delta-G solvation = -26663.965836 eV Core-core repulsion = 22638.454769 eV Total energy + Delta-G solvation = -4025.511067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49303 -40.77480 -38.93705 -37.64030 -36.64524 -35.71012 -34.70108 -32.51503 -31.59009 -30.25482 -29.85598 -27.56554 -26.14569 -25.07741 -23.41680 -22.69106 -22.24258 -20.61833 -19.78047 -19.14305 -18.47759 -18.05119 -17.72664 -17.10759 -16.73685 -16.33574 -15.83996 -15.56175 -15.21592 -14.93428 -14.50596 -14.42524 -13.94759 -13.57523 -13.42007 -13.28057 -13.18455 -12.77991 -12.56945 -12.52457 -12.39789 -12.07127 -11.92720 -11.42585 -11.31005 -11.03680 -10.81547 -10.63085 -10.56404 -9.90640 -9.77970 -9.30751 -8.98855 -8.62585 -8.47959 -8.35876 -8.29762 -6.63276 -4.32021 0.73165 0.87272 1.68968 2.41065 2.42593 3.10197 3.26770 3.30617 3.39785 3.52704 3.53950 3.83832 4.30460 4.34472 4.36626 4.52617 4.72403 4.83712 4.88273 5.03286 5.06382 5.12065 5.34199 5.67023 5.88336 5.89607 5.95005 5.98798 6.08290 6.12502 6.24980 6.52951 6.61591 6.70775 6.79678 6.83368 6.90498 7.09305 7.18627 7.44768 7.66051 8.11417 8.21091 8.43260 8.71560 9.39064 10.77882 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.002942 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.281436 B = 9514.495220 C =10275.819653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.055 0.945 5 C -0.613 4.613 6 H 0.065 0.935 7 C 0.038 3.962 8 N -0.901 5.901 9 Si 1.048 2.952 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.659 5.659 14 C 0.496 3.504 15 O -0.528 6.528 16 C 0.509 3.491 17 O -0.501 6.501 18 N -0.646 5.646 19 C 0.178 3.822 20 C -0.118 4.118 21 C -0.086 4.086 22 C -0.118 4.118 23 C 0.051 3.949 24 C -0.001 4.001 25 O -0.307 6.307 26 C 0.215 3.785 27 O -0.308 6.308 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.406 0.594 35 H 0.427 0.573 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.552 7.841 14.376 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.137 3.863 4 H 0.072 0.928 5 C -0.651 4.651 6 H 0.083 0.917 7 C -0.169 4.169 8 N -0.534 5.534 9 Si 0.877 3.123 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.308 5.308 14 C 0.274 3.726 15 O -0.406 6.406 16 C 0.293 3.707 17 O -0.374 6.374 18 N -0.293 5.293 19 C 0.082 3.918 20 C -0.138 4.138 21 C -0.105 4.105 22 C -0.137 4.137 23 C 0.006 3.994 24 C -0.048 4.048 25 O -0.223 6.223 26 C 0.104 3.896 27 O -0.225 6.225 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.241 0.759 35 H 0.265 0.735 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.642 7.178 12.676 22.879 hybrid contribution -0.291 0.419 1.674 1.751 sum -17.934 7.597 14.351 24.192 Atomic orbital electron populations 1.21920 0.97091 0.99432 1.02028 1.22285 0.94067 0.99507 1.01897 1.19486 0.96815 0.88899 0.81135 0.92764 1.22150 0.89369 1.49149 1.04473 0.91655 1.25713 0.97822 0.93584 0.99756 1.70823 1.03574 1.42154 1.36827 0.83959 0.75284 0.77215 0.75885 1.20591 1.19809 1.21260 1.46195 1.13157 1.52726 1.18762 1.19591 0.84543 0.81426 0.87012 1.90751 1.49282 1.59008 1.41549 1.20914 0.81691 0.78711 0.89428 1.90739 1.48743 1.56251 1.41679 1.43202 1.16345 1.51359 1.18433 1.16781 0.88658 0.96532 0.89819 1.21195 0.99712 0.96667 0.96228 1.20854 0.95398 0.98482 0.95730 1.20107 0.89877 1.02747 1.00974 1.19532 0.83919 1.00919 0.95029 1.19375 0.87510 1.02829 0.95066 1.87366 1.19770 1.79684 1.35470 1.25605 0.94468 0.89467 0.80088 1.87366 1.18558 1.50964 1.65569 0.94534 0.93383 0.92690 0.91707 0.92345 0.91952 0.75860 0.73481 0.82633 0.83789 0.84532 0.89842 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.55 37.15 0.32 -2.47 16 2 C -0.14 -2.96 5.18 -26.74 -0.14 -3.10 16 3 C 0.24 5.50 1.80 -69.08 -0.12 5.38 16 4 H 0.05 1.34 6.08 -51.93 -0.32 1.03 16 5 C -0.61 -16.20 9.10 -34.44 -0.31 -16.51 16 6 H 0.07 1.82 7.95 -52.49 -0.42 1.40 16 7 C 0.04 1.04 5.42 -17.82 -0.10 0.94 16 8 N -0.90 -26.50 13.70 55.43 0.76 -25.74 16 9 Si 1.05 24.56 25.34 -169.99 -4.31 20.25 16 10 H -0.28 -6.18 6.75 56.52 0.38 -5.80 16 11 H -0.27 -6.09 6.37 56.52 0.36 -5.73 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.66 -13.21 5.03 -55.40 -0.28 -13.49 16 14 C 0.50 9.15 6.54 -11.63 -0.08 9.08 16 15 O -0.53 -10.46 13.63 5.49 0.07 -10.38 16 16 C 0.51 8.18 7.66 -11.64 -0.09 8.09 16 17 O -0.50 -8.48 13.91 5.46 0.08 -8.40 16 18 N -0.65 -8.99 5.34 -10.21 -0.05 -9.04 16 19 C 0.18 2.32 6.36 -83.59 -0.53 1.79 16 20 C -0.12 -1.41 8.67 -39.37 -0.34 -1.75 16 21 C -0.09 -0.80 10.03 -39.60 -0.40 -1.19 16 22 C -0.12 -1.09 10.06 -39.41 -0.40 -1.49 16 23 C 0.05 0.57 7.15 -39.11 -0.28 0.29 16 24 C 0.00 -0.02 7.06 -38.92 -0.27 -0.29 16 25 O -0.31 -3.52 11.40 -45.88 -0.52 -4.04 16 26 C 0.22 1.72 8.90 101.05 0.90 2.62 16 27 O -0.31 -3.18 11.40 -45.77 -0.52 -3.70 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.90 5.60 -51.93 -0.29 0.61 16 30 H 0.05 1.07 7.95 -51.93 -0.41 0.65 16 31 H 0.06 1.43 4.39 -51.93 -0.23 1.20 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.27 7.88 8.72 -40.82 -0.36 7.53 16 34 H 0.41 7.78 8.00 -40.82 -0.33 7.45 16 35 H 0.43 5.59 8.28 -40.82 -0.34 5.25 16 36 H 0.16 1.98 6.13 -52.49 -0.32 1.66 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -30.94 334.23 -5.98 -36.93 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.40 Total: 11.20 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.84 Total: 1.38 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.43 Total: -48.27 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.89 Total: -26.52 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.31 Total: 20.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.94 -5.98 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439561664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.648 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds