Wall clock time and date at job start Tue Mar 31 2020 13:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46764 * 2 1 4 4 C 1.50694 * 109.46662 * 240.00158 * 2 1 3 5 5 H 1.08003 * 119.99974 * 242.58793 * 4 2 1 6 6 C 1.37878 * 120.00457 * 62.59304 * 4 2 1 7 7 N 1.31509 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00068 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47272 * 89.99401 * 8 6 4 10 10 H 1.48494 * 109.46751 * 209.99649 * 8 6 4 11 11 H 1.48500 * 109.47099 * 329.99388 * 8 6 4 12 12 N 1.46503 * 109.47213 * 119.99778 * 2 1 3 13 13 C 1.46500 * 119.99424 * 66.38646 * 12 2 1 14 14 S 1.65590 * 119.99930 * 246.38351 * 12 2 1 15 15 O 1.42096 * 106.40578 * 6.74805 * 14 12 2 16 16 O 1.42103 * 106.40101 * 139.66401 * 14 12 2 17 17 N 1.65599 * 107.21876 * 253.20438 * 14 12 2 18 18 C 1.46501 * 119.99970 * 83.09447 * 17 14 12 19 19 C 1.50696 * 110.43431 * 75.21559 * 18 17 14 20 20 O 1.20827 * 119.99826 * 147.58944 * 19 18 17 21 21 O 1.34233 * 120.00098 * 327.59210 * 19 18 17 22 22 C 1.54882 * 110.48616 * 312.67247 * 18 17 14 23 23 C 1.55241 * 102.59152 * 279.18906 * 22 18 17 24 24 C 1.54270 * 104.22620 * 322.08517 * 23 22 18 25 25 C 1.53871 * 106.60108 * 23.60906 * 24 23 22 26 26 H 1.09000 * 109.47273 * 59.99748 * 1 2 3 27 27 H 1.09001 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46722 * 299.99936 * 1 2 3 29 29 H 0.97003 * 120.00280 * 179.97438 * 7 6 4 30 30 H 1.09008 * 109.47084 * 269.99379 * 13 12 2 31 31 H 1.09007 * 109.46761 * 150.00386 * 13 12 2 32 32 H 1.08994 * 109.47685 * 29.99881 * 13 12 2 33 33 H 0.97004 * 119.99702 * 263.09622 * 17 14 12 34 34 H 0.96695 * 117.00042 * 179.97438 * 21 19 18 35 35 H 1.09001 * 110.75751 * 37.58095 * 22 18 17 36 36 H 1.09001 * 110.76053 * 160.94634 * 22 18 17 37 37 H 1.08993 * 110.46603 * 203.39676 * 23 22 18 38 38 H 1.08998 * 110.57930 * 80.82856 * 23 22 18 39 39 H 1.09000 * 110.02938 * 264.32068 * 24 23 22 40 40 H 1.08999 * 110.02931 * 142.90034 * 24 23 22 41 41 H 1.09001 * 110.03406 * 240.71495 * 25 24 23 42 42 H 1.08996 * 110.02810 * 119.28468 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6182 -1.6123 -1.1320 6 6 1.7438 -0.2090 -2.4821 7 7 1.0300 0.8890 -2.6020 8 14 2.3670 -1.0892 -4.0073 9 1 1.3607 -2.0883 -4.4482 10 1 2.5914 -0.1006 -5.0923 11 1 3.6444 -1.7786 -3.6937 12 7 2.0184 -0.6906 1.1962 13 6 1.7834 -2.1273 1.3597 14 16 2.8360 0.1529 2.3633 15 8 2.7607 1.5232 1.9952 16 8 2.3757 -0.3425 3.6131 17 7 4.4318 -0.2748 2.2499 18 6 5.2984 0.3827 1.2686 19 6 5.6529 1.7735 1.7279 20 8 6.7271 2.2481 1.4438 21 8 4.7753 2.4850 2.4528 22 6 4.6097 0.4288 -0.1179 23 6 4.8758 -0.9953 -0.6756 24 6 6.3069 -1.3260 -0.2035 25 6 6.5755 -0.4498 1.0325 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.8274 1.2420 -3.4825 30 1 0.8373 -2.2841 1.8780 31 1 2.5940 -2.5640 1.9432 32 1 1.7440 -2.6029 0.3798 33 1 4.7928 -0.9606 2.8332 34 1 5.0477 3.3720 2.7248 35 1 3.5403 0.6114 -0.0122 36 1 5.0707 1.1850 -0.7534 37 1 4.8239 -0.9942 -1.7643 38 1 4.1631 -1.7084 -0.2612 39 1 7.0233 -1.0910 -0.9907 40 1 6.3776 -2.3804 0.0636 41 1 7.4223 0.2104 0.8453 42 1 6.7766 -1.0791 1.8995 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577164097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:52 Heat of formation + Delta-G solvation = -153.548166 kcal Electronic energy + Delta-G solvation = -28693.766063 eV Core-core repulsion = 24801.228368 eV Total energy + Delta-G solvation = -3892.537695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45231 -37.96077 -36.61241 -36.21875 -35.76590 -35.13460 -32.96669 -32.58980 -29.21818 -28.60981 -27.90613 -25.52243 -25.19857 -23.12107 -20.87245 -20.64813 -19.74494 -18.56884 -18.05713 -17.41749 -16.88778 -16.54922 -16.32999 -15.80290 -15.18867 -14.78096 -14.62660 -14.34836 -13.56002 -13.39133 -13.20237 -12.94550 -12.81353 -12.29140 -12.03756 -11.86846 -11.77914 -11.48951 -11.43966 -11.29861 -11.25472 -11.13996 -11.08580 -10.96030 -10.84770 -10.79917 -10.73031 -10.61946 -10.33584 -10.17791 -9.99335 -9.77912 -9.36007 -9.09884 -8.52541 -7.98240 -6.13815 -4.19911 1.20408 2.40807 3.20285 3.24231 3.28160 3.30064 3.46577 4.17690 4.31100 4.50845 4.76685 4.92364 5.18279 5.20912 5.34474 5.57530 5.62373 5.67246 5.75725 5.77586 5.97265 6.04962 6.14714 6.19350 6.27814 6.39131 6.61041 6.69758 6.71142 6.76883 6.83189 6.83978 6.88669 7.08942 7.14474 7.46987 7.58819 7.73731 7.98803 8.17552 8.20062 8.81001 9.44668 10.92232 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.007696 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.825183 B = 3637.437946 C = 4508.872515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.262 3.738 3 H 0.070 0.930 4 C -0.524 4.524 5 H 0.074 0.926 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.995 5.995 13 C 0.105 3.895 14 S 2.774 3.226 15 O -0.950 6.950 16 O -0.999 6.999 17 N -1.112 6.112 18 C 0.191 3.809 19 C 0.478 3.522 20 O -0.526 6.526 21 O -0.479 6.479 22 C -0.137 4.137 23 C -0.103 4.103 24 C -0.128 4.128 25 C -0.112 4.112 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.010 0.990 29 H 0.263 0.737 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.411 0.589 34 H 0.400 0.600 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -4.084 6.163 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.087 0.913 4 C -0.563 4.563 5 H 0.091 0.909 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.838 5.838 13 C -0.042 4.042 14 S 2.783 3.217 15 O -0.934 6.934 16 O -0.983 6.983 17 N -0.869 5.869 18 C 0.100 3.900 19 C 0.319 3.681 20 O -0.415 6.415 21 O -0.288 6.288 22 C -0.175 4.175 23 C -0.140 4.140 24 C -0.166 4.166 25 C -0.151 4.151 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.243 0.757 34 H 0.257 0.743 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.323 -3.441 6.349 10.285 hybrid contribution 0.805 -0.413 -0.739 1.169 sum 8.128 -3.854 5.609 10.601 Atomic orbital electron populations 1.22070 0.98286 0.99636 1.00437 1.18832 0.91416 0.93396 0.80467 0.91288 1.21448 1.33887 1.11264 0.89733 0.90856 1.24866 0.95051 0.94852 0.98764 1.69890 1.37812 1.20622 1.23852 0.86700 0.79321 0.79464 0.83061 1.20835 1.21343 1.19502 1.57861 1.70011 1.17957 1.37981 1.21200 0.99189 0.81321 1.02495 1.02243 0.72410 0.73976 0.73092 1.93634 1.85254 1.31038 1.83434 1.93559 1.79473 1.82406 1.42840 1.56251 1.29292 1.53430 1.47957 1.20759 0.93620 0.85120 0.90488 1.23930 0.81229 0.88819 0.74155 1.90655 1.24472 1.71739 1.54666 1.84878 1.46891 1.32020 1.64975 1.23436 1.04397 0.99431 0.90273 1.22443 0.94169 0.95893 1.01532 1.22259 0.98940 0.98935 0.96425 1.22428 0.95215 0.98039 0.99453 0.89342 0.94796 0.97058 0.92654 0.93851 0.93822 0.89816 0.75695 0.74283 0.85976 0.90094 0.90630 0.89749 0.91704 0.91726 0.89017 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.09 37.16 0.34 -2.90 16 2 C 0.26 5.78 1.50 -69.08 -0.10 5.68 16 3 H 0.07 1.72 5.53 -51.93 -0.29 1.44 16 4 C -0.52 -11.71 5.18 -34.44 -0.18 -11.89 16 5 H 0.07 1.54 4.43 -52.48 -0.23 1.31 16 6 C 0.07 1.63 5.31 -17.82 -0.09 1.53 16 7 N -0.88 -22.78 11.51 55.43 0.64 -22.14 16 8 Si 0.89 18.93 29.54 -169.99 -5.02 13.91 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.50 7.08 56.52 0.40 -5.10 16 12 N -1.00 -18.81 2.80 -115.85 -0.32 -19.13 16 13 C 0.10 1.68 9.65 59.85 0.58 2.26 16 14 S 2.77 51.77 5.29 -107.50 -0.57 51.20 16 15 O -0.95 -20.11 11.77 -67.05 -0.79 -20.90 16 16 O -1.00 -20.35 17.72 -57.17 -1.01 -21.37 16 17 N -1.11 -16.60 5.46 0.94 0.01 -16.59 16 18 C 0.19 2.98 0.77 -131.32 -0.10 2.88 16 19 C 0.48 7.99 7.16 36.00 0.26 8.25 16 20 O -0.53 -9.38 16.37 -18.75 -0.31 -9.69 16 21 O -0.48 -7.68 9.76 -47.29 -0.46 -8.15 16 22 C -0.14 -2.43 5.15 -24.55 -0.13 -2.56 16 23 C -0.10 -1.63 4.85 -24.88 -0.12 -1.75 16 24 C -0.13 -1.61 6.80 -25.61 -0.17 -1.79 16 25 C -0.11 -1.44 6.03 -25.61 -0.15 -1.59 16 26 H 0.09 2.17 6.28 -51.93 -0.33 1.84 16 27 H 0.03 0.71 7.84 -51.93 -0.41 0.30 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 30 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.04 0.58 8.04 -51.93 -0.42 0.16 16 32 H 0.08 1.34 6.50 -51.93 -0.34 1.01 16 33 H 0.41 4.88 8.44 -34.47 -0.29 4.59 16 34 H 0.40 4.49 9.10 45.56 0.41 4.91 16 35 H 0.12 2.48 1.68 -51.93 -0.09 2.39 16 36 H 0.08 1.45 8.05 -51.93 -0.42 1.04 16 37 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 38 H 0.08 1.35 6.43 -51.93 -0.33 1.01 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.22 6.80 -51.93 -0.35 0.87 16 42 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -30.01 328.85 -7.49 -37.50 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.73 Total: 12.28 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 0.12 Total: -1.88 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.32 Total: -57.86 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -2.57 Total: -60.10 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: 51.77 SS G_CDS: -0.57 Total: 51.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.01 -7.49 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577164097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.045 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds