Wall clock time and date at job start Tue Mar 31 2020 13:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21258 * 119.99645 * 2 1 4 4 C 1.47182 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.39772 * 120.13432 * 6.32151 * 4 2 1 6 6 C 1.38575 * 119.74549 * 180.22949 * 5 4 2 7 7 N 1.39713 * 119.99015 * 179.72272 * 6 5 4 8 8 C 1.47836 * 111.00170 * 337.31200 * 7 6 5 9 9 C 1.54909 * 104.79690 * 213.63584 * 8 7 6 10 10 C 1.55142 * 101.65085 * 37.06943 * 9 8 7 11 11 O 1.42902 * 110.70348 * 82.73079 * 10 9 8 12 12 C 1.50704 * 110.85131 * 205.89352 * 10 9 8 13 13 H 1.08001 * 119.99777 * 113.69266 * 12 10 9 14 14 C 1.37876 * 120.00189 * 293.68310 * 12 10 9 15 15 N 1.31517 * 119.99848 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99945 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47324 * 90.00331 * 16 14 12 18 18 H 1.48500 * 109.46707 * 210.00017 * 16 14 12 19 19 H 1.48497 * 109.47063 * 329.99789 * 16 14 12 20 20 C 1.47448 * 110.99882 * 216.46715 * 7 6 5 21 21 C 1.39066 * 120.01819 * 359.47008 * 6 5 4 22 22 C 1.38254 * 120.27446 * 0.55308 * 21 6 5 23 23 C 1.37956 * 120.25339 * 359.69981 * 22 21 6 24 24 N 1.48025 * 120.00733 * 180.02562 * 23 22 21 25 25 O 1.21797 * 119.99733 * 51.94819 * 24 23 22 26 26 O 1.21802 * 119.99745 * 231.94766 * 24 23 22 27 27 H 1.08999 * 109.47016 * 269.99516 * 1 2 3 28 28 H 1.09003 * 109.47698 * 30.00017 * 1 2 3 29 29 H 1.09004 * 109.46961 * 150.00438 * 1 2 3 30 30 H 1.07997 * 120.12898 * 359.95150 * 5 4 2 31 31 H 1.09004 * 110.37579 * 332.46094 * 8 7 6 32 32 H 1.09003 * 110.37908 * 94.80810 * 8 7 6 33 33 H 1.09001 * 110.99030 * 278.97405 * 9 8 7 34 34 H 1.09003 * 111.02300 * 155.17478 * 9 8 7 35 35 H 0.96698 * 114.00031 * 66.40263 * 11 10 9 36 36 H 0.97001 * 120.00076 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.88747 * 242.66639 * 20 7 6 38 38 H 1.09000 * 109.88857 * 3.69081 * 20 7 6 39 39 H 1.08002 * 119.86377 * 180.27501 * 21 6 5 40 40 H 1.08000 * 119.86888 * 179.72043 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5534 -2.4831 -0.1320 6 6 2.2539 -3.6787 -0.1256 7 7 1.5692 -4.8900 -0.2520 8 6 0.1558 -4.7447 0.1562 9 6 -0.2146 -6.1080 0.7919 10 6 1.1013 -6.4796 1.5250 11 8 1.1707 -5.8328 2.7974 12 6 1.2248 -7.9734 1.6812 13 1 2.0050 -8.5082 1.1598 14 6 0.3420 -8.6574 2.4898 15 7 -0.6082 -8.0062 3.1244 16 14 0.4956 -10.5089 2.6840 17 1 1.3927 -10.8140 3.8273 18 1 -0.8459 -11.0929 2.9378 19 1 1.0621 -11.0916 1.4411 20 6 2.1921 -5.9380 0.5774 21 6 3.6388 -3.6729 0.0012 22 6 4.3217 -2.4781 0.1328 23 6 3.6351 -1.2815 0.1331 24 7 4.3718 -0.0053 0.2738 25 8 5.3142 0.2376 -0.4585 26 8 4.0354 0.8017 1.1218 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 0.4783 -2.4854 -0.2345 31 1 0.0526 -3.9440 0.8887 32 1 -0.4720 -4.5483 -0.7129 33 1 -0.4555 -6.8439 0.0248 34 1 -1.0377 -5.9994 1.4981 35 1 0.5060 -6.1374 3.4302 36 1 -1.2291 -8.4873 3.6936 37 1 2.5636 -6.7418 -0.0582 38 1 3.0125 -5.5140 1.1563 39 1 4.1827 -4.6060 0.0014 40 1 5.3968 -2.4815 0.2354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:15 Heat of formation + Delta-G solvation = -41.880104 kcal Electronic energy + Delta-G solvation = -27313.613796 eV Core-core repulsion = 23290.474440 eV Total energy + Delta-G solvation = -4023.139356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05414 -40.61145 -39.44987 -37.76649 -36.21768 -35.17087 -32.71792 -32.33799 -31.74129 -29.91491 -29.03717 -28.57358 -26.04321 -24.82922 -24.01375 -22.56608 -20.97072 -20.38814 -19.69654 -18.89287 -18.44894 -17.48116 -17.30872 -17.25116 -15.88327 -15.71572 -15.38614 -15.21962 -14.96156 -14.74036 -14.61991 -14.20970 -13.82567 -13.39307 -13.06979 -12.88184 -12.53831 -12.44139 -12.22529 -12.12258 -11.64207 -11.53642 -11.40460 -11.31906 -11.03123 -10.92585 -10.87674 -10.79253 -10.63661 -10.41269 -10.06581 -9.90291 -9.68827 -9.47167 -8.86400 -8.44796 -8.07602 -6.46917 -4.55411 -0.05375 0.56945 1.17794 1.56999 2.04825 3.07943 3.15662 3.16583 3.19076 3.53775 3.87794 4.11110 4.17995 4.58980 4.68570 4.78394 4.79650 4.85163 4.98540 5.15036 5.16482 5.27051 5.42519 5.48433 5.57238 5.60176 5.69213 5.77424 5.81250 5.90676 5.99960 6.10556 6.43403 6.54369 6.59988 6.85594 7.09035 7.10941 7.12908 7.17602 7.55471 7.78630 7.85619 8.45929 9.12225 9.22674 10.60695 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.003291 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.428770 B = 8505.314062 C = 9059.552436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.381 3.619 3 O -0.429 6.429 4 C -0.089 4.089 5 C -0.120 4.120 6 C 0.167 3.833 7 N -0.472 5.472 8 C 0.030 3.970 9 C -0.133 4.133 10 C 0.241 3.759 11 O -0.591 6.591 12 C -0.539 4.539 13 H 0.065 0.935 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.049 3.951 21 C -0.128 4.128 22 C -0.042 4.042 23 C -0.037 4.037 24 N 0.029 4.971 25 O -0.177 6.177 26 O -0.116 6.116 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.388 0.612 36 H 0.271 0.729 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.154 0.846 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 7.666 -5.697 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.257 3.743 3 O -0.302 6.302 4 C -0.092 4.092 5 C -0.141 4.141 6 C 0.063 3.937 7 N -0.182 5.182 8 C -0.095 4.095 9 C -0.172 4.172 10 C 0.200 3.800 11 O -0.402 6.402 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.075 4.075 21 C -0.150 4.150 22 C -0.062 4.062 23 C -0.121 4.121 24 N 0.556 4.444 25 O -0.388 6.388 26 O -0.345 6.345 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.174 0.826 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.241 0.759 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.171 0.829 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.520 7.564 -6.525 10.003 hybrid contribution -0.338 -1.032 1.008 1.482 sum 0.183 6.532 -5.517 8.552 Atomic orbital electron populations 1.22203 0.92242 1.05236 1.05496 1.22604 0.92568 0.86923 0.72206 1.90705 1.71781 1.33746 1.33968 1.20122 0.90572 0.96618 1.01858 1.21365 1.00820 0.89180 1.02758 1.19550 0.93093 0.91066 0.89983 1.60441 1.04854 1.03807 1.49073 1.23472 0.85753 1.01272 0.98994 1.23283 1.01535 0.92481 0.99914 1.19620 0.88102 0.91042 0.81196 1.86074 1.61364 1.67212 1.25513 1.21512 1.15429 0.91538 1.29202 0.91656 1.24997 0.94126 0.99392 0.94442 1.69556 1.17348 1.36667 1.30100 0.86395 0.77646 0.84067 0.78805 1.20330 1.20942 1.19647 1.23305 0.98062 0.92511 0.93603 1.21121 0.93014 0.98175 1.02667 1.20617 1.00907 0.89236 0.95393 1.20888 0.91472 0.84242 1.15463 1.43334 0.99866 1.01967 0.99262 1.94506 1.20167 1.82577 1.41576 1.94539 1.69776 1.42446 1.27781 0.87692 0.88859 0.89268 0.82610 0.92061 0.90466 0.91063 0.89763 0.75907 0.91938 0.88777 0.91264 0.82892 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 9.88 36.00 0.36 -1.30 16 2 C 0.38 5.02 7.10 -30.68 -0.22 4.80 16 3 O -0.43 -7.14 13.76 -18.93 -0.26 -7.40 16 4 C -0.09 -1.22 5.86 -105.09 -0.62 -1.84 16 5 C -0.12 -1.50 8.01 -38.88 -0.31 -1.81 16 6 C 0.17 2.35 5.77 -83.83 -0.48 1.87 16 7 N -0.47 -7.30 5.27 -167.96 -0.89 -8.18 16 8 C 0.03 0.45 5.45 -2.30 -0.01 0.44 16 9 C -0.13 -2.54 5.67 -24.59 -0.14 -2.68 16 10 C 0.24 5.09 0.85 -89.95 -0.08 5.02 16 11 O -0.59 -13.49 13.08 -35.23 -0.46 -13.95 16 12 C -0.54 -12.74 8.22 -34.44 -0.28 -13.02 16 13 H 0.07 1.53 7.53 -52.49 -0.40 1.13 16 14 C 0.07 1.74 5.28 -17.82 -0.09 1.65 16 15 N -0.90 -21.55 10.69 55.43 0.59 -20.96 16 16 Si 0.90 18.89 29.54 -169.99 -5.02 13.87 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C 0.05 0.87 5.52 -2.84 -0.02 0.86 16 21 C -0.13 -1.67 8.59 -39.27 -0.34 -2.01 16 22 C -0.04 -0.54 9.82 -39.68 -0.39 -0.93 16 23 C -0.04 -0.57 6.31 -79.45 -0.50 -1.07 16 24 N 0.03 0.51 3.57 34.21 0.12 0.63 16 25 O -0.18 -3.10 19.15 -29.46 -0.56 -3.67 16 26 O -0.12 -2.14 16.18 -37.22 -0.60 -2.74 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.59 6.26 -51.93 -0.33 0.26 16 30 H 0.16 1.57 4.58 -52.49 -0.24 1.33 16 31 H 0.06 0.89 6.49 -51.93 -0.34 0.56 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 34 H 0.08 1.71 7.76 -51.93 -0.40 1.31 16 35 H 0.39 9.18 6.98 45.56 0.32 9.50 16 36 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 37 H 0.09 1.63 7.63 -51.93 -0.40 1.24 16 38 H 0.07 1.20 5.88 -51.93 -0.31 0.90 16 39 H 0.15 1.77 6.78 -52.49 -0.36 1.41 16 40 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -27.85 333.65 -8.86 -36.71 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -3.68 Total: 10.69 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.12 Total: -10.03 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: -0.17 Total: -28.51 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -1.89 Total: -27.76 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.85 -8.86 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.168 kcal (2) G-P(sol) polarization free energy of solvation -27.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds