Wall clock time and date at job start Tue Mar 31 2020 13:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21258 * 119.99645 * 2 1 4 4 C 1.47182 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.39772 * 120.13432 * 6.32151 * 4 2 1 6 6 C 1.38575 * 119.74549 * 180.22949 * 5 4 2 7 7 N 1.39713 * 119.99015 * 179.72272 * 6 5 4 8 8 C 1.47836 * 111.00170 * 337.31200 * 7 6 5 9 9 C 1.54909 * 104.79690 * 213.63584 * 8 7 6 10 10 C 1.55142 * 101.65085 * 37.06943 * 9 8 7 11 11 O 1.42902 * 110.70348 * 82.73079 * 10 9 8 12 12 C 1.50704 * 110.85131 * 205.89352 * 10 9 8 13 13 H 1.08001 * 119.99777 * 113.69266 * 12 10 9 14 14 C 1.37876 * 120.00189 * 293.68310 * 12 10 9 15 15 N 1.31517 * 119.99848 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99945 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47324 * 90.00331 * 16 14 12 18 18 H 1.48500 * 109.46707 * 210.00017 * 16 14 12 19 19 H 1.48497 * 109.47063 * 329.99789 * 16 14 12 20 20 C 1.47448 * 110.99882 * 216.46715 * 7 6 5 21 21 C 1.39066 * 120.01819 * 359.47008 * 6 5 4 22 22 C 1.38254 * 120.27446 * 0.55308 * 21 6 5 23 23 C 1.37956 * 120.25339 * 359.69981 * 22 21 6 24 24 N 1.48025 * 120.00733 * 180.02562 * 23 22 21 25 25 O 1.21797 * 119.99733 * 51.94819 * 24 23 22 26 26 O 1.21802 * 119.99745 * 231.94766 * 24 23 22 27 27 H 1.08999 * 109.47016 * 269.99516 * 1 2 3 28 28 H 1.09003 * 109.47698 * 30.00017 * 1 2 3 29 29 H 1.09004 * 109.46961 * 150.00438 * 1 2 3 30 30 H 1.07997 * 120.12898 * 359.95150 * 5 4 2 31 31 H 1.09004 * 110.37579 * 332.46094 * 8 7 6 32 32 H 1.09003 * 110.37908 * 94.80810 * 8 7 6 33 33 H 1.09001 * 110.99030 * 278.97405 * 9 8 7 34 34 H 1.09003 * 111.02300 * 155.17478 * 9 8 7 35 35 H 0.96698 * 114.00031 * 66.40263 * 11 10 9 36 36 H 0.97001 * 120.00076 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.88747 * 242.66639 * 20 7 6 38 38 H 1.09000 * 109.88857 * 3.69081 * 20 7 6 39 39 H 1.08002 * 119.86377 * 180.27501 * 21 6 5 40 40 H 1.08000 * 119.86888 * 179.72043 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5534 -2.4831 -0.1320 6 6 2.2539 -3.6787 -0.1256 7 7 1.5692 -4.8900 -0.2520 8 6 0.1558 -4.7447 0.1562 9 6 -0.2146 -6.1080 0.7919 10 6 1.1013 -6.4796 1.5250 11 8 1.1707 -5.8328 2.7974 12 6 1.2248 -7.9734 1.6812 13 1 2.0050 -8.5082 1.1598 14 6 0.3420 -8.6574 2.4898 15 7 -0.6082 -8.0062 3.1244 16 14 0.4956 -10.5089 2.6840 17 1 1.3927 -10.8140 3.8273 18 1 -0.8459 -11.0929 2.9378 19 1 1.0621 -11.0916 1.4411 20 6 2.1921 -5.9380 0.5774 21 6 3.6388 -3.6729 0.0012 22 6 4.3217 -2.4781 0.1328 23 6 3.6351 -1.2815 0.1331 24 7 4.3718 -0.0053 0.2738 25 8 5.3142 0.2376 -0.4585 26 8 4.0354 0.8017 1.1218 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 0.4783 -2.4854 -0.2345 31 1 0.0526 -3.9440 0.8887 32 1 -0.4720 -4.5483 -0.7129 33 1 -0.4555 -6.8439 0.0248 34 1 -1.0377 -5.9994 1.4981 35 1 0.5060 -6.1374 3.4302 36 1 -1.2291 -8.4873 3.6936 37 1 2.5636 -6.7418 -0.0582 38 1 3.0125 -5.5140 1.1563 39 1 4.1827 -4.6060 0.0014 40 1 5.3968 -2.4815 0.2354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:14 Heat of formation + Delta-G solvation = -58.405935 kcal Electronic energy + Delta-G solvation = -27314.330410 eV Core-core repulsion = 23290.474440 eV Total energy + Delta-G solvation = -4023.855970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.30609 -41.79643 -40.58760 -39.04881 -37.54901 -36.66986 -34.13662 -33.73376 -33.05526 -30.88197 -30.33259 -29.88531 -27.44065 -26.27304 -25.16088 -23.76946 -22.16560 -21.73373 -21.00587 -20.04309 -19.74647 -19.19299 -18.54213 -18.45404 -17.02166 -16.94612 -16.76824 -16.47694 -16.21490 -16.00731 -15.79169 -15.42777 -15.12196 -14.66388 -14.36400 -14.12410 -13.77554 -13.55885 -13.20971 -13.16182 -13.15859 -12.92373 -12.76598 -12.72054 -12.57825 -12.36310 -12.25180 -12.22875 -12.18480 -12.03157 -11.31126 -11.17192 -11.02370 -10.65231 -10.52864 -10.13804 -9.27168 -8.25316 -6.38869 -1.21134 -0.52769 -0.05527 0.36419 1.04746 1.40985 1.45957 1.52524 2.08613 2.37876 2.58093 2.74419 3.00042 3.17260 3.59494 3.63137 3.69911 3.76151 3.94432 4.10921 4.16922 4.28178 4.30378 4.38814 4.44949 4.56458 4.57916 4.62859 4.69182 4.77194 4.98682 4.99984 5.08593 5.12652 5.29354 5.40693 5.54596 5.65201 5.78302 5.93961 6.07396 6.17107 6.48474 6.65184 7.31990 7.41265 8.79983 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.003291 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.428770 B = 8505.314062 C = 9059.552436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.379 3.621 3 O -0.473 6.473 4 C -0.099 4.099 5 C -0.101 4.101 6 C 0.152 3.848 7 N -0.468 5.468 8 C 0.037 3.963 9 C -0.128 4.128 10 C 0.223 3.777 11 O -0.598 6.598 12 C -0.558 4.558 13 H 0.060 0.940 14 C 0.035 3.965 15 N -0.911 5.911 16 Si 0.954 3.046 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.056 3.944 21 C -0.124 4.124 22 C -0.038 4.038 23 C -0.057 4.057 24 N 0.031 4.969 25 O -0.182 6.182 26 O -0.147 6.147 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.186 0.814 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.381 0.619 36 H 0.270 0.730 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.168 0.832 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 7.369 -6.663 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.257 3.743 3 O -0.349 6.349 4 C -0.102 4.102 5 C -0.123 4.123 6 C 0.049 3.951 7 N -0.178 5.178 8 C -0.088 4.088 9 C -0.167 4.167 10 C 0.182 3.818 11 O -0.408 6.408 12 C -0.596 4.596 13 H 0.078 0.922 14 C -0.166 4.166 15 N -0.551 5.551 16 Si 0.780 3.220 17 H -0.207 1.207 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.068 4.068 21 C -0.146 4.146 22 C -0.057 4.057 23 C -0.140 4.140 24 N 0.554 4.446 25 O -0.395 6.395 26 O -0.370 6.370 27 H 0.139 0.861 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.203 0.797 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.186 0.814 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.273 7.294 -7.477 10.449 hybrid contribution -0.058 -0.989 1.299 1.634 sum -0.331 6.304 -6.178 8.833 Atomic orbital electron populations 1.22287 0.88297 1.07033 1.06932 1.23323 0.94615 0.85884 0.70445 1.90701 1.72998 1.34941 1.36268 1.20407 0.90163 0.97655 1.01972 1.21596 1.02062 0.87872 1.00727 1.19710 0.93595 0.90999 0.90827 1.60476 1.04824 1.03824 1.48645 1.23491 0.85974 0.98939 1.00381 1.23054 0.99829 0.94669 0.99162 1.19878 0.90629 0.90061 0.81198 1.86066 1.61235 1.67306 1.26240 1.21854 1.15221 0.93339 1.29208 0.92193 1.25574 0.94130 1.02348 0.94522 1.69628 1.17650 1.37479 1.30378 0.85617 0.77316 0.80621 0.78433 1.20699 1.20885 1.19432 1.23128 0.97100 0.93389 0.93214 1.21307 0.92953 0.98604 1.01721 1.20822 1.01876 0.88468 0.94573 1.21210 0.92330 0.83489 1.16958 1.43645 0.99675 1.02567 0.98725 1.94475 1.20641 1.82967 1.41410 1.94530 1.70282 1.43657 1.28574 0.86102 0.87865 0.86702 0.79664 0.91127 0.87092 0.92178 0.91575 0.76775 0.92043 0.88620 0.91066 0.81445 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 9.88 71.23 0.70 -1.88 16 2 C 0.38 9.34 7.10 28.04 0.20 9.54 16 3 O -0.47 -15.67 13.76 20.47 0.28 -15.39 16 4 C -0.10 -2.52 5.86 -20.17 -0.12 -2.64 16 5 C -0.10 -2.20 8.01 22.72 0.18 -2.02 16 6 C 0.15 3.81 5.77 38.16 0.22 4.03 16 7 N -0.47 -13.07 5.27 -685.31 -3.61 -16.68 16 8 C 0.04 0.99 5.45 86.78 0.47 1.46 16 9 C -0.13 -4.71 5.67 31.98 0.18 -4.53 16 10 C 0.22 9.22 0.85 -10.36 -0.01 9.21 16 11 O -0.60 -27.05 13.08 -148.98 -1.95 -29.00 16 12 C -0.56 -26.23 8.22 25.60 0.21 -26.02 16 13 H 0.06 2.80 7.53 -2.91 -0.02 2.77 16 14 C 0.04 1.66 5.28 84.65 0.45 2.11 16 15 N -0.91 -43.78 10.69 21.45 0.23 -43.55 16 16 Si 0.95 38.49 29.54 68.60 2.03 40.51 16 17 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 C 0.06 1.90 5.52 86.64 0.48 2.38 16 21 C -0.12 -2.94 8.59 22.47 0.19 -2.75 16 22 C -0.04 -0.92 9.82 22.21 0.22 -0.70 16 23 C -0.06 -1.65 6.31 36.70 0.23 -1.42 16 24 N 0.03 1.07 3.57 -45.69 -0.16 0.91 16 25 O -0.18 -6.37 19.15 18.89 0.36 -6.00 16 26 O -0.15 -5.50 16.18 26.30 0.43 -5.07 16 27 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.11 0.96 6.26 -2.39 -0.01 0.95 16 30 H 0.19 2.81 4.58 -2.91 -0.01 2.79 16 31 H 0.07 1.79 6.49 -2.38 -0.02 1.77 16 32 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 34 H 0.07 2.65 7.76 -2.39 -0.02 2.63 16 35 H 0.38 18.12 6.98 -74.06 -0.52 17.60 16 36 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 37 H 0.10 3.18 7.63 -2.39 -0.02 3.16 16 38 H 0.07 2.35 5.88 -2.39 -0.01 2.33 16 39 H 0.17 3.44 6.78 -2.91 -0.02 3.42 16 40 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -61.01 333.65 1.80 -59.20 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.60 Total: 28.29 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.61 Total: -13.22 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -3.55 Total: -59.32 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.88 Total: -55.46 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Total: -61.01 1.80 -59.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.797 kcal (2) G-P(sol) polarization free energy of solvation -61.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds