Wall clock time and date at job start Tue Mar 31 2020 12:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39596 * 120.07249 * 2 1 4 4 C 1.47848 * 120.14479 * 0.03716 * 3 2 1 5 5 O 1.21558 * 119.99862 * 314.05917 * 4 3 2 6 6 N 1.34771 * 119.99992 * 134.05646 * 4 3 2 7 7 C 1.47026 * 125.64848 * 354.74091 * 6 4 3 8 8 C 1.54320 * 107.27096 * 181.02251 * 7 6 4 9 9 C 1.55158 * 102.94606 * 22.18714 * 8 7 6 10 10 O 1.42906 * 110.99982 * 82.57605 * 9 8 7 11 11 C 1.50692 * 111.00545 * 206.38438 * 9 8 7 12 12 H 1.08001 * 120.00303 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99905 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99830 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00047 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47475 * 89.99773 * 15 13 11 17 17 H 1.48497 * 109.46889 * 210.00346 * 15 13 11 18 18 H 1.48503 * 109.46911 * 329.99803 * 15 13 11 19 19 C 1.47426 * 125.65115 * 174.42806 * 6 4 3 20 20 C 1.39557 * 119.71228 * 180.02562 * 3 2 1 21 21 C 1.37974 * 119.84976 * 359.97438 * 20 3 2 22 22 C 1.38331 * 120.14780 * 0.25910 * 21 20 3 23 23 C 1.37941 * 120.07534 * 180.02562 * 2 1 3 24 24 N 1.48014 * 119.92522 * 359.95855 * 23 2 1 25 25 O 1.21804 * 119.99738 * 186.83143 * 24 23 2 26 26 O 1.21805 * 120.00064 * 6.82302 * 24 23 2 27 27 H 1.09000 * 109.47462 * 97.67725 * 1 2 3 28 28 H 1.09004 * 109.46842 * 217.67429 * 1 2 3 29 29 H 1.08996 * 109.47437 * 337.67102 * 1 2 3 30 30 H 1.09006 * 109.88007 * 300.43567 * 7 6 4 31 31 H 1.09001 * 109.88190 * 61.44674 * 7 6 4 32 32 H 1.09001 * 110.72218 * 140.55707 * 8 7 6 33 33 H 1.09007 * 110.72034 * 263.82765 * 8 7 6 34 34 H 0.96702 * 113.99769 * 180.02562 * 10 9 8 35 35 H 0.96998 * 119.99646 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.36605 * 274.75190 * 19 6 4 37 37 H 1.08998 * 110.36605 * 37.06840 * 19 6 4 38 38 H 1.08004 * 120.07493 * 179.97438 * 20 3 2 39 39 H 1.08011 * 119.92516 * 179.97438 * 21 20 3 40 40 H 1.08003 * 119.85201 * 179.71901 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2081 0.0000 4 6 1.4721 2.4912 0.0008 5 8 0.5344 2.6554 -0.7551 6 7 1.8423 3.4790 0.8397 7 6 2.8804 3.3789 1.8761 8 6 2.9376 4.7405 2.6001 9 6 1.5404 5.3486 2.3080 10 8 0.5618 4.8447 3.2194 11 6 1.5874 6.8542 2.3485 12 1 2.5177 7.3600 2.5609 13 6 0.4426 7.5862 2.1144 14 7 -0.6904 6.9704 1.8562 15 14 0.5009 9.4527 2.1640 16 1 0.8134 9.9744 0.8092 17 1 -0.8164 9.9775 2.6049 18 1 1.5521 9.8899 3.1174 19 6 1.2779 4.8406 0.8660 20 6 3.6020 1.1993 -0.0005 21 6 4.2812 -0.0017 -0.0005 22 6 3.5820 -1.1953 -0.0054 23 6 2.1983 -1.1937 -0.0005 24 7 1.4582 -2.4755 -0.0002 25 8 2.0609 -3.5266 0.1248 26 8 0.2465 -2.4793 -0.1247 27 1 -0.3634 -0.1373 -1.0184 28 1 -0.3633 -0.8134 0.6281 29 1 -0.3634 0.9506 0.3904 30 1 2.6216 2.5926 2.5852 31 1 3.8439 3.1604 1.4157 32 1 3.0815 4.6018 3.6716 33 1 3.7258 5.3668 2.1820 34 1 -0.3275 5.1962 3.0755 35 1 -1.4958 7.4853 1.6919 36 1 1.7850 5.4755 0.1394 37 1 0.2072 4.8115 0.6635 38 1 4.1491 2.1305 -0.0010 39 1 5.3613 -0.0099 -0.0014 40 1 4.1185 -2.1326 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:44 Heat of formation + Delta-G solvation = -51.580614 kcal Electronic energy + Delta-G solvation = -27290.898175 eV Core-core repulsion = 23267.338173 eV Total energy + Delta-G solvation = -4023.560002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37277 -40.49798 -38.79357 -37.29710 -36.75205 -34.55653 -33.22170 -32.31098 -32.25077 -30.29906 -28.33931 -27.76872 -26.23918 -25.48234 -23.85234 -22.39512 -22.20652 -19.94722 -19.77266 -18.74408 -18.47887 -17.70111 -17.34596 -16.67125 -16.49042 -16.15878 -15.49111 -15.04106 -14.74373 -14.49860 -14.05354 -13.93482 -13.44145 -13.20028 -13.00755 -12.78966 -12.63442 -12.48239 -12.22159 -11.99197 -11.72951 -11.63330 -11.47970 -11.22144 -11.14386 -10.92361 -10.76847 -10.72017 -10.59200 -10.31182 -9.90562 -9.68907 -9.52484 -9.34035 -8.79834 -8.53984 -8.00866 -6.40177 -4.50322 -0.32259 0.48462 1.13880 1.25361 2.63709 3.08804 3.13895 3.21668 3.23712 3.36912 4.11324 4.13845 4.18840 4.35334 4.50454 4.58040 4.84010 4.89509 5.15462 5.20635 5.23192 5.40209 5.52835 5.63397 5.64873 5.66484 5.86534 5.88524 5.89749 6.03269 6.07786 6.32610 6.42415 6.54848 6.65788 6.73125 7.08666 7.18612 7.56047 7.62939 7.85359 7.91112 8.36463 8.53466 9.19903 9.33945 10.67115 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.003235 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.595223 B = 8654.591466 C = 9129.881509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.033 3.967 3 C -0.119 4.119 4 C 0.564 3.436 5 O -0.530 6.530 6 N -0.598 5.598 7 C 0.099 3.901 8 C -0.118 4.118 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.540 4.540 12 H 0.068 0.932 13 C 0.071 3.929 14 N -0.894 5.894 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.091 3.909 20 C -0.036 4.036 21 C -0.130 4.130 22 C -0.040 4.040 23 C -0.057 4.057 24 N 0.034 4.966 25 O -0.171 6.171 26 O -0.153 6.153 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.387 0.613 35 H 0.273 0.727 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 -11.612 -2.563 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.031 3.969 3 C -0.123 4.123 4 C 0.351 3.649 5 O -0.408 6.408 6 N -0.330 5.330 7 C -0.024 4.024 8 C -0.156 4.156 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.578 4.578 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.533 5.533 15 Si 0.733 3.267 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.029 4.029 20 C -0.054 4.054 21 C -0.148 4.148 22 C -0.059 4.059 23 C -0.140 4.140 24 N 0.551 4.449 25 O -0.384 6.384 26 O -0.369 6.369 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.240 0.760 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.100 -11.257 -2.808 15.383 hybrid contribution -0.538 0.951 -0.296 1.132 sum 9.562 -10.306 -3.104 14.397 Atomic orbital electron populations 1.21394 0.87634 1.05137 1.04893 1.19868 0.98591 0.89178 0.89249 1.20039 0.93892 0.93432 1.04894 1.17514 0.83708 0.82333 0.81344 1.90812 1.28015 1.81060 1.40934 1.48687 1.38093 1.13395 1.32826 1.22195 0.89927 1.00234 0.90022 1.22650 0.99291 0.93490 1.00189 1.19610 0.84377 0.91496 0.83547 1.86070 1.23158 1.71921 1.58255 1.21482 0.96144 0.90318 1.49903 0.91375 1.25091 0.95196 0.99745 0.93166 1.69552 1.00078 1.36534 1.47144 0.86368 0.77739 0.84109 0.78517 1.20364 1.20905 1.19638 1.23469 1.00177 0.77736 1.01566 1.21906 0.92960 0.99754 0.90805 1.21116 1.01126 0.90435 1.02143 1.21154 0.90744 1.00994 0.92989 1.20807 0.92443 0.83244 1.17534 1.43497 1.01176 1.02556 0.97649 1.94517 1.70149 1.20024 1.53690 1.94515 0.96112 1.93745 1.52484 0.88556 0.88668 0.89661 0.91995 0.92503 0.90454 0.90243 0.76026 0.91728 0.91683 0.89578 0.83211 0.83007 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 7.83 36.00 0.28 -1.69 16 2 C 0.03 0.47 5.91 -104.23 -0.62 -0.14 16 3 C -0.12 -1.68 5.36 -104.97 -0.56 -2.25 16 4 C 0.56 10.26 6.56 -12.33 -0.08 10.18 16 5 O -0.53 -11.39 15.51 5.32 0.08 -11.31 16 6 N -0.60 -11.08 3.32 -171.49 -0.57 -11.65 16 7 C 0.10 1.53 5.95 -3.06 -0.02 1.51 16 8 C -0.12 -2.11 6.12 -24.90 -0.15 -2.26 16 9 C 0.25 5.64 0.89 -89.51 -0.08 5.56 16 10 O -0.58 -14.25 13.19 -35.23 -0.46 -14.71 16 11 C -0.54 -13.21 8.25 -34.44 -0.28 -13.49 16 12 H 0.07 1.62 7.76 -52.49 -0.41 1.22 16 13 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -22.81 10.72 55.43 0.59 -22.22 16 15 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C 0.09 2.01 5.67 -2.41 -0.01 2.00 16 20 C -0.04 -0.37 8.42 -39.19 -0.33 -0.70 16 21 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 22 C -0.04 -0.38 9.55 -39.50 -0.38 -0.75 16 23 C -0.06 -0.72 6.82 -80.01 -0.55 -1.26 16 24 N 0.03 0.48 4.45 33.93 0.15 0.63 16 25 O -0.17 -2.39 18.46 -29.46 -0.54 -2.93 16 26 O -0.15 -2.26 15.37 -29.46 -0.45 -2.72 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.10 1.31 5.94 -51.93 -0.31 1.01 16 29 H 0.08 1.41 6.17 -51.93 -0.32 1.09 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.67 5.80 -51.93 -0.30 0.36 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 34 H 0.39 9.88 6.93 45.56 0.32 10.19 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.06 1.45 8.04 -51.93 -0.42 1.03 16 37 H 0.09 2.17 7.60 -51.93 -0.39 1.78 16 38 H 0.15 1.31 6.29 -52.48 -0.33 0.98 16 39 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 40 H 0.15 1.13 7.62 -52.48 -0.40 0.73 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -28.62 335.51 -8.24 -36.86 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -3.80 Total: 11.60 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.27 Total: -3.06 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.18 Total: -33.23 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.38 Total: -31.66 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.62 -8.24 -36.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.717 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds