Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39596 * 120.07249 * 2 1 4 4 C 1.47848 * 120.14479 * 0.03716 * 3 2 1 5 5 O 1.21558 * 119.99862 * 314.05917 * 4 3 2 6 6 N 1.34771 * 119.99992 * 134.05646 * 4 3 2 7 7 C 1.47026 * 125.64848 * 354.74091 * 6 4 3 8 8 C 1.54320 * 107.27096 * 181.02251 * 7 6 4 9 9 C 1.55158 * 102.94606 * 22.18714 * 8 7 6 10 10 O 1.42906 * 110.99982 * 82.57605 * 9 8 7 11 11 C 1.50692 * 111.00545 * 206.38438 * 9 8 7 12 12 H 1.08001 * 120.00303 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99905 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99830 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00047 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47475 * 89.99773 * 15 13 11 17 17 H 1.48497 * 109.46889 * 210.00346 * 15 13 11 18 18 H 1.48503 * 109.46911 * 329.99803 * 15 13 11 19 19 C 1.47426 * 125.65115 * 174.42806 * 6 4 3 20 20 C 1.39557 * 119.71228 * 180.02562 * 3 2 1 21 21 C 1.37974 * 119.84976 * 359.97438 * 20 3 2 22 22 C 1.38331 * 120.14780 * 0.25910 * 21 20 3 23 23 C 1.37941 * 120.07534 * 180.02562 * 2 1 3 24 24 N 1.48014 * 119.92522 * 359.95855 * 23 2 1 25 25 O 1.21804 * 119.99738 * 186.83143 * 24 23 2 26 26 O 1.21805 * 120.00064 * 6.82302 * 24 23 2 27 27 H 1.09000 * 109.47462 * 97.67725 * 1 2 3 28 28 H 1.09004 * 109.46842 * 217.67429 * 1 2 3 29 29 H 1.08996 * 109.47437 * 337.67102 * 1 2 3 30 30 H 1.09006 * 109.88007 * 300.43567 * 7 6 4 31 31 H 1.09001 * 109.88190 * 61.44674 * 7 6 4 32 32 H 1.09001 * 110.72218 * 140.55707 * 8 7 6 33 33 H 1.09007 * 110.72034 * 263.82765 * 8 7 6 34 34 H 0.96702 * 113.99769 * 180.02562 * 10 9 8 35 35 H 0.96998 * 119.99646 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.36605 * 274.75190 * 19 6 4 37 37 H 1.08998 * 110.36605 * 37.06840 * 19 6 4 38 38 H 1.08004 * 120.07493 * 179.97438 * 20 3 2 39 39 H 1.08011 * 119.92516 * 179.97438 * 21 20 3 40 40 H 1.08003 * 119.85201 * 179.71901 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2081 0.0000 4 6 1.4721 2.4912 0.0008 5 8 0.5344 2.6554 -0.7551 6 7 1.8423 3.4790 0.8397 7 6 2.8804 3.3789 1.8761 8 6 2.9376 4.7405 2.6001 9 6 1.5404 5.3486 2.3080 10 8 0.5618 4.8447 3.2194 11 6 1.5874 6.8542 2.3485 12 1 2.5177 7.3600 2.5609 13 6 0.4426 7.5862 2.1144 14 7 -0.6904 6.9704 1.8562 15 14 0.5009 9.4527 2.1640 16 1 0.8134 9.9744 0.8092 17 1 -0.8164 9.9775 2.6049 18 1 1.5521 9.8899 3.1174 19 6 1.2779 4.8406 0.8660 20 6 3.6020 1.1993 -0.0005 21 6 4.2812 -0.0017 -0.0005 22 6 3.5820 -1.1953 -0.0054 23 6 2.1983 -1.1937 -0.0005 24 7 1.4582 -2.4755 -0.0002 25 8 2.0609 -3.5266 0.1248 26 8 0.2465 -2.4793 -0.1247 27 1 -0.3634 -0.1373 -1.0184 28 1 -0.3633 -0.8134 0.6281 29 1 -0.3634 0.9506 0.3904 30 1 2.6216 2.5926 2.5852 31 1 3.8439 3.1604 1.4157 32 1 3.0815 4.6018 3.6716 33 1 3.7258 5.3668 2.1820 34 1 -0.3275 5.1962 3.0755 35 1 -1.4958 7.4853 1.6919 36 1 1.7850 5.4755 0.1394 37 1 0.2072 4.8115 0.6635 38 1 4.1491 2.1305 -0.0010 39 1 5.3613 -0.0099 -0.0014 40 1 4.1185 -2.1326 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = -70.201525 kcal Electronic energy + Delta-G solvation = -27291.705638 eV Core-core repulsion = 23267.338173 eV Total energy + Delta-G solvation = -4024.367465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.40167 -41.71295 -40.04758 -38.82096 -37.81963 -36.22742 -34.19604 -34.16012 -33.36683 -31.78012 -29.76090 -29.04744 -27.30790 -27.07220 -25.18564 -23.62775 -23.19795 -21.50981 -21.01919 -19.80854 -19.69343 -19.13572 -18.73883 -17.98222 -17.50508 -17.22001 -17.06750 -16.65692 -16.13983 -16.03461 -15.25805 -14.90945 -14.74710 -14.69224 -14.64930 -13.99882 -13.74727 -13.56112 -13.51752 -13.40569 -13.26902 -13.04324 -12.85712 -12.59837 -12.49677 -12.33888 -12.30044 -12.24530 -12.07908 -11.82602 -11.30656 -11.13375 -10.74486 -10.66854 -10.36619 -10.24325 -9.56380 -8.27998 -6.44946 -1.28981 -0.45069 0.18414 0.27598 1.41102 1.43864 1.45468 1.53568 1.85573 2.24061 2.36992 2.98551 3.10051 3.22248 3.48829 3.54089 3.74625 3.78562 3.94403 4.09201 4.17011 4.24119 4.34645 4.37281 4.43154 4.58406 4.69801 4.73500 4.84038 4.88430 4.92543 4.98589 5.05891 5.12933 5.24167 5.37867 5.42030 5.43493 5.74481 6.01410 6.47151 6.48084 6.64312 6.94525 7.27929 7.36125 8.77441 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.003235 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.595223 B = 8654.591466 C = 9129.881509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 C -0.138 4.138 4 C 0.561 3.439 5 O -0.579 6.579 6 N -0.602 5.602 7 C 0.101 3.899 8 C -0.113 4.113 9 C 0.230 3.770 10 O -0.593 6.593 11 C -0.554 4.554 12 H 0.074 0.926 13 C 0.025 3.975 14 N -0.920 5.920 15 Si 0.965 3.035 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.263 1.263 19 C 0.105 3.895 20 C -0.024 4.024 21 C -0.099 4.099 22 C -0.024 4.024 23 C -0.068 4.068 24 N 0.034 4.966 25 O -0.152 6.152 26 O -0.198 6.198 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.377 0.623 35 H 0.270 0.730 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.174 0.826 39 H 0.208 0.792 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.722 -12.644 -2.269 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 C -0.142 4.142 4 C 0.350 3.650 5 O -0.460 6.460 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.150 4.150 9 C 0.189 3.811 10 O -0.402 6.402 11 C -0.592 4.592 12 H 0.092 0.908 13 C -0.176 4.176 14 N -0.560 5.560 15 Si 0.790 3.210 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.018 4.018 20 C -0.042 4.042 21 C -0.117 4.117 22 C -0.043 4.043 23 C -0.151 4.151 24 N 0.548 4.452 25 O -0.372 6.372 26 O -0.403 6.403 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.228 0.772 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.192 0.808 39 H 0.225 0.775 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 14.822 -12.277 -2.504 19.408 hybrid contribution -1.901 1.206 -0.384 2.284 sum 12.921 -11.070 -2.888 17.258 Atomic orbital electron populations 1.21217 0.89448 1.03335 1.04335 1.19728 0.97752 0.90250 0.91108 1.19671 0.95502 0.90727 1.08314 1.18179 0.83193 0.83438 0.80160 1.90776 1.30298 1.82111 1.42823 1.48687 1.38758 1.12146 1.33708 1.22400 0.91212 0.98942 0.89494 1.22668 0.96375 0.94736 1.01242 1.19932 0.86379 0.91284 0.83463 1.86061 1.22971 1.72091 1.59061 1.21856 0.96289 0.91684 1.49369 0.90800 1.25843 0.95039 1.03617 0.93074 1.69681 1.00507 1.37701 1.48076 0.85447 0.77518 0.79531 0.78497 1.20165 1.21319 1.18768 1.22981 0.97447 0.80063 1.01296 1.22236 0.90858 1.02113 0.89037 1.21693 1.03341 0.88220 0.98475 1.21706 0.88995 1.03225 0.90358 1.20942 0.93587 0.81695 1.18900 1.43741 1.01145 1.03093 0.97248 1.94476 1.69875 1.20610 1.52193 1.94535 0.96856 1.94040 1.54910 0.89363 0.88450 0.92676 0.91438 0.87268 0.89782 0.88320 0.77240 0.92062 0.92522 0.94203 0.80837 0.77545 0.79649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 7.83 71.24 0.56 -3.49 16 2 C 0.01 0.39 5.91 -19.61 -0.12 0.27 16 3 C -0.14 -3.72 5.36 -20.09 -0.11 -3.83 16 4 C 0.56 20.82 6.56 86.79 0.57 21.39 16 5 O -0.58 -26.62 15.51 -3.90 -0.06 -26.68 16 6 N -0.60 -22.24 3.32 -814.75 -2.71 -24.95 16 7 C 0.10 2.82 5.95 86.73 0.52 3.34 16 8 C -0.11 -3.76 6.12 31.78 0.19 -3.57 16 9 C 0.23 10.47 0.89 -10.07 -0.01 10.46 16 10 O -0.59 -29.91 13.19 -148.98 -1.97 -31.87 16 11 C -0.55 -27.24 8.25 25.60 0.21 -27.03 16 12 H 0.07 3.46 7.76 -2.91 -0.02 3.43 16 13 C 0.02 1.25 5.30 84.66 0.45 1.69 16 14 N -0.92 -49.06 10.72 21.45 0.23 -48.83 16 15 Si 0.96 40.29 29.54 68.60 2.03 42.32 16 16 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 19 C 0.10 4.80 5.67 86.93 0.49 5.29 16 20 C -0.02 -0.38 8.42 22.53 0.19 -0.19 16 21 C -0.10 -0.89 10.03 22.23 0.22 -0.67 16 22 C -0.02 -0.33 9.55 22.32 0.21 -0.11 16 23 C -0.07 -1.56 6.82 36.34 0.25 -1.31 16 24 N 0.03 0.91 4.45 -46.55 -0.21 0.71 16 25 O -0.15 -3.87 18.46 18.88 0.35 -3.52 16 26 O -0.20 -6.06 15.37 18.88 0.29 -5.77 16 27 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.10 2.95 5.94 -2.38 -0.01 2.94 16 29 H 0.05 2.04 6.17 -2.39 -0.01 2.02 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.83 16 31 H 0.11 1.93 5.80 -2.39 -0.01 1.92 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.10 2.90 8.01 -2.38 -0.02 2.88 16 34 H 0.38 20.37 6.93 -74.06 -0.51 19.86 16 35 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 36 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 37 H 0.04 2.16 7.60 -2.39 -0.02 2.14 16 38 H 0.17 1.92 6.29 -2.91 -0.02 1.90 16 39 H 0.21 -0.19 8.06 -2.90 -0.02 -0.21 16 40 H 0.19 1.46 7.62 -2.91 -0.02 1.44 16 Total: -1.00 -69.07 335.51 2.18 -66.89 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.59 Total: 29.47 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 3.63 Total: 2.24 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -2.69 Total: -73.07 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -1.39 Total: -67.84 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -69.07 2.18 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds