Wall clock time and date at job start Tue Mar 31 2020 12:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37986 * 120.07110 * 2 1 4 4 C 1.38335 * 120.14451 * 179.97438 * 3 2 1 5 5 C 1.38379 * 120.29241 * 359.97438 * 4 3 2 6 6 C 1.37938 * 120.14583 * 359.74713 * 5 4 3 7 7 N 1.48019 * 120.07603 * 180.25348 * 6 5 4 8 8 O 1.21798 * 119.99650 * 0.25512 * 7 6 5 9 9 O 1.21797 * 119.99894 * 180.25644 * 7 6 5 10 10 C 1.39549 * 120.07695 * 179.97438 * 2 1 3 11 11 C 1.47849 * 120.14500 * 359.97438 * 10 2 1 12 12 O 1.21553 * 119.99749 * 89.99991 * 11 10 2 13 13 N 1.34770 * 120.00037 * 270.00181 * 11 10 2 14 14 C 1.47023 * 125.65293 * 359.97438 * 13 11 10 15 15 C 1.54321 * 107.27344 * 178.96988 * 14 13 11 16 16 C 1.55154 * 102.94301 * 337.80965 * 15 14 13 17 17 O 1.42905 * 111.00315 * 277.38619 * 16 15 14 18 18 C 1.50702 * 111.00501 * 153.57397 * 16 15 14 19 19 H 1.08002 * 120.00299 * 244.58476 * 18 16 15 20 20 C 1.37884 * 119.99942 * 64.30035 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47476 * 125.62943 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47482 * 270.02361 * 1 2 3 28 28 H 1.09006 * 109.47237 * 30.02604 * 1 2 3 29 29 H 1.09002 * 109.46760 * 150.02377 * 1 2 3 30 30 H 1.07999 * 119.92884 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.85351 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.93060 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.87990 * 59.55313 * 14 13 11 34 34 H 1.08997 * 109.87957 * 298.39463 * 14 13 11 35 35 H 1.09005 * 110.72215 * 219.44116 * 15 14 13 36 36 H 1.09000 * 110.86748 * 96.24590 * 15 14 13 37 37 H 0.96701 * 113.99475 * 295.41540 * 17 16 15 38 38 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.34764 * 85.24918 * 26 13 11 40 40 H 1.09003 * 110.39902 * 322.91519 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 0.0005 5 6 4.2813 0.0020 0.0016 6 6 3.6023 -1.1987 0.0074 7 7 4.3521 -2.4749 0.0142 8 8 5.5700 -2.4656 0.0194 9 8 3.7512 -3.5343 0.0146 10 6 2.2064 -1.2076 0.0005 11 6 1.4721 -2.4909 0.0017 12 8 1.1698 -3.0190 -1.0505 13 7 1.1378 -3.0749 1.1693 14 6 1.4398 -2.5482 2.5084 15 6 0.8441 -3.5353 3.5341 16 6 -0.2500 -4.2696 2.7150 17 8 -1.4566 -3.5050 2.6713 18 6 -0.5067 -5.6471 3.2695 19 1 -0.2814 -6.5196 2.6741 20 6 -1.0238 -5.7939 4.5393 21 7 -1.2981 -4.7315 5.2643 22 14 -1.3347 -7.5016 5.2294 23 1 -0.9449 -8.5210 4.2225 24 1 -0.5293 -7.6913 6.4626 25 1 -2.7766 -7.6501 5.5523 26 6 0.4085 -4.3484 1.3151 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1294 -0.0004 31 1 4.1181 2.1333 0.0001 32 1 5.3613 0.0102 0.0024 33 1 0.9841 -1.5656 2.6316 34 1 2.5190 -2.4783 2.6444 35 1 0.4024 -2.9990 4.3740 36 1 1.6016 -4.2376 3.8823 37 1 -1.8789 -3.3871 3.5332 38 1 -1.6622 -4.8348 6.1575 39 1 1.1007 -5.1891 1.2682 40 1 -0.3541 -4.4402 0.5418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592849265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:35 Heat of formation + Delta-G solvation = -55.823759 kcal Electronic energy + Delta-G solvation = -28100.171733 eV Core-core repulsion = 24076.427735 eV Total energy + Delta-G solvation = -4023.743998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22100 -40.31612 -38.85367 -37.23622 -36.43218 -34.36118 -33.51908 -32.23726 -32.20634 -29.82246 -28.43900 -27.66436 -26.72956 -25.31553 -23.63413 -22.24005 -21.92195 -19.99116 -19.44503 -18.71736 -18.51271 -17.59211 -17.33836 -17.09730 -16.21271 -15.92078 -15.22674 -14.99284 -14.73525 -14.36621 -14.08408 -14.03364 -13.51152 -13.12235 -12.93144 -12.62302 -12.34532 -12.29692 -12.19354 -11.83354 -11.77975 -11.46748 -11.39972 -11.36033 -11.04995 -11.02072 -10.93223 -10.65978 -10.46865 -10.08524 -9.89474 -9.68279 -9.44121 -9.31442 -8.71383 -8.26951 -8.08309 -6.32198 -4.39208 -0.30420 0.54123 1.26471 1.35254 2.77238 2.90420 3.18496 3.26863 3.28868 3.34936 4.06156 4.22529 4.25938 4.40314 4.55362 4.61696 4.77453 4.95810 5.14136 5.22813 5.38333 5.44028 5.46924 5.62017 5.65060 5.74919 5.82514 5.85970 5.92825 6.09205 6.20273 6.38058 6.39845 6.62621 6.83425 6.88488 7.25070 7.28522 7.67280 7.71138 7.93774 7.99164 8.39700 8.64190 9.28133 9.37777 10.75703 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.004175 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.922607 B = 6704.928498 C = 7314.234110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.049 4.049 3 C -0.073 4.073 4 C -0.106 4.106 5 C -0.065 4.065 6 C -0.017 4.017 7 N 0.023 4.977 8 O -0.163 6.163 9 O -0.131 6.131 10 C -0.048 4.048 11 C 0.575 3.425 12 O -0.531 6.531 13 N -0.586 5.586 14 C 0.100 3.900 15 C -0.135 4.135 16 C 0.250 3.750 17 O -0.583 6.583 18 C -0.533 4.533 19 H 0.068 0.932 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.123 3.877 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.383 0.617 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 15.067 -5.515 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.050 4.050 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.084 4.084 6 C -0.100 4.100 7 N 0.544 4.456 8 O -0.376 6.376 9 O -0.350 6.350 10 C -0.053 4.053 11 C 0.360 3.640 12 O -0.410 6.410 13 N -0.317 5.317 14 C -0.022 4.022 15 C -0.174 4.174 16 C 0.209 3.791 17 O -0.393 6.393 18 C -0.572 4.572 19 H 0.086 0.914 20 C -0.129 4.129 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.003 3.997 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.789 15.494 -6.595 18.156 hybrid contribution 0.169 -1.093 1.199 1.631 sum 6.958 14.401 -5.396 16.880 Atomic orbital electron populations 1.20970 0.88532 1.04350 1.04233 1.20065 0.97625 0.90259 0.97045 1.21474 0.94328 0.98142 0.95127 1.21283 0.94131 0.97624 0.99439 1.20992 1.02090 0.89580 0.95770 1.21132 0.90848 0.84704 1.13344 1.43557 1.01192 1.02821 0.98044 1.94492 0.95417 1.94095 1.53637 1.94677 1.70073 1.18220 1.52043 1.19959 0.90964 0.96540 0.97798 1.17219 0.79736 0.83070 0.83927 1.90804 1.55645 1.64011 1.30502 1.48394 1.54716 1.23936 1.04641 1.22168 0.98240 0.98640 0.83196 1.23187 0.99921 0.97184 0.97115 1.19597 0.81830 0.89729 0.87903 1.86108 1.40502 1.75677 1.36984 1.21505 1.43437 0.92053 1.00160 0.91419 1.24980 0.94018 0.97620 0.96329 1.69656 1.44125 1.28763 1.11222 0.86348 0.77971 0.83727 0.78884 1.19453 1.20834 1.20784 1.22481 0.94474 0.83464 0.99320 0.89282 0.90146 0.90119 0.83440 0.83240 0.82595 0.92498 0.93817 0.89584 0.91118 0.76622 0.92233 0.90259 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.62 36.00 0.35 -1.08 16 2 C -0.05 -0.59 5.91 -104.23 -0.62 -1.20 16 3 C -0.07 -0.59 9.69 -39.64 -0.38 -0.98 16 4 C -0.11 -0.79 10.04 -39.49 -0.40 -1.19 16 5 C -0.07 -0.68 9.55 -39.64 -0.38 -1.06 16 6 C -0.02 -0.25 6.88 -79.55 -0.55 -0.80 16 7 N 0.02 0.40 4.45 34.16 0.15 0.56 16 8 O -0.16 -2.71 18.45 -29.46 -0.54 -3.26 16 9 O -0.13 -2.67 16.26 -33.16 -0.54 -3.21 16 10 C -0.05 -0.76 4.81 -104.97 -0.51 -1.27 16 11 C 0.57 11.39 3.15 -12.33 -0.04 11.35 16 12 O -0.53 -12.17 17.25 -2.96 -0.05 -12.23 16 13 N -0.59 -11.88 3.20 -171.59 -0.55 -12.43 16 14 C 0.10 1.88 6.47 -3.06 -0.02 1.86 16 15 C -0.14 -2.89 5.50 -24.90 -0.14 -3.03 16 16 C 0.25 5.91 0.88 -89.63 -0.08 5.83 16 17 O -0.58 -14.25 13.17 -35.23 -0.46 -14.72 16 18 C -0.53 -13.70 8.25 -34.44 -0.28 -13.98 16 19 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 20 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 21 N -0.90 -22.61 10.76 55.43 0.60 -22.01 16 22 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.12 2.78 6.08 -2.50 -0.02 2.76 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.08 1.17 7.08 -51.93 -0.37 0.80 16 30 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 32 H 0.16 1.31 7.61 -52.48 -0.40 0.91 16 33 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.89 7.68 -51.93 -0.40 1.49 16 36 H 0.07 1.55 8.03 -51.93 -0.42 1.14 16 37 H 0.38 9.41 7.26 45.56 0.33 9.74 16 38 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.08 1.78 8.03 -51.93 -0.42 1.37 16 40 H 0.07 1.73 8.04 -51.93 -0.42 1.31 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -30.55 344.97 -8.53 -39.09 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.16 Total: 9.06 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.15 Total: -1.05 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.20 Total: -33.88 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.60 Total: -33.41 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.55 -8.53 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.737 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds