Wall clock time and date at job start Tue Mar 31 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37986 * 120.07110 * 2 1 4 4 C 1.38335 * 120.14451 * 179.97438 * 3 2 1 5 5 C 1.38379 * 120.29241 * 359.97438 * 4 3 2 6 6 C 1.37938 * 120.14583 * 359.74713 * 5 4 3 7 7 N 1.48019 * 120.07603 * 180.25348 * 6 5 4 8 8 O 1.21798 * 119.99650 * 0.25512 * 7 6 5 9 9 O 1.21797 * 119.99894 * 180.25644 * 7 6 5 10 10 C 1.39549 * 120.07695 * 179.97438 * 2 1 3 11 11 C 1.47849 * 120.14500 * 359.97438 * 10 2 1 12 12 O 1.21553 * 119.99749 * 89.99991 * 11 10 2 13 13 N 1.34770 * 120.00037 * 270.00181 * 11 10 2 14 14 C 1.47023 * 125.65293 * 359.97438 * 13 11 10 15 15 C 1.54321 * 107.27344 * 178.96988 * 14 13 11 16 16 C 1.55154 * 102.94301 * 337.80965 * 15 14 13 17 17 O 1.42905 * 111.00315 * 277.38619 * 16 15 14 18 18 C 1.50702 * 111.00501 * 153.57397 * 16 15 14 19 19 H 1.08002 * 120.00299 * 244.58476 * 18 16 15 20 20 C 1.37884 * 119.99942 * 64.30035 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47476 * 125.62943 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47482 * 270.02361 * 1 2 3 28 28 H 1.09006 * 109.47237 * 30.02604 * 1 2 3 29 29 H 1.09002 * 109.46760 * 150.02377 * 1 2 3 30 30 H 1.07999 * 119.92884 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.85351 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.93060 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.87990 * 59.55313 * 14 13 11 34 34 H 1.08997 * 109.87957 * 298.39463 * 14 13 11 35 35 H 1.09005 * 110.72215 * 219.44116 * 15 14 13 36 36 H 1.09000 * 110.86748 * 96.24590 * 15 14 13 37 37 H 0.96701 * 113.99475 * 295.41540 * 17 16 15 38 38 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.34764 * 85.24918 * 26 13 11 40 40 H 1.09003 * 110.39902 * 322.91519 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 0.0005 5 6 4.2813 0.0020 0.0016 6 6 3.6023 -1.1987 0.0074 7 7 4.3521 -2.4749 0.0142 8 8 5.5700 -2.4656 0.0194 9 8 3.7512 -3.5343 0.0146 10 6 2.2064 -1.2076 0.0005 11 6 1.4721 -2.4909 0.0017 12 8 1.1698 -3.0190 -1.0505 13 7 1.1378 -3.0749 1.1693 14 6 1.4398 -2.5482 2.5084 15 6 0.8441 -3.5353 3.5341 16 6 -0.2500 -4.2696 2.7150 17 8 -1.4566 -3.5050 2.6713 18 6 -0.5067 -5.6471 3.2695 19 1 -0.2814 -6.5196 2.6741 20 6 -1.0238 -5.7939 4.5393 21 7 -1.2981 -4.7315 5.2643 22 14 -1.3347 -7.5016 5.2294 23 1 -0.9449 -8.5210 4.2225 24 1 -0.5293 -7.6913 6.4626 25 1 -2.7766 -7.6501 5.5523 26 6 0.4085 -4.3484 1.3151 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1294 -0.0004 31 1 4.1181 2.1333 0.0001 32 1 5.3613 0.0102 0.0024 33 1 0.9841 -1.5656 2.6316 34 1 2.5190 -2.4783 2.6444 35 1 0.4024 -2.9990 4.3740 36 1 1.6016 -4.2376 3.8823 37 1 -1.8789 -3.3871 3.5332 38 1 -1.6622 -4.8348 6.1575 39 1 1.1007 -5.1891 1.2682 40 1 -0.3541 -4.4402 0.5418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592849265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:34 Heat of formation + Delta-G solvation = -76.305465 kcal Electronic energy + Delta-G solvation = -28101.059887 eV Core-core repulsion = 24076.427735 eV Total energy + Delta-G solvation = -4024.632152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.45504 -41.60172 -40.15660 -38.90530 -37.75300 -36.17842 -34.42206 -34.20581 -33.23784 -31.49954 -30.17981 -28.76209 -27.78047 -27.08280 -24.96217 -23.60252 -23.02822 -21.70801 -20.90680 -19.90441 -19.74933 -19.20051 -18.79812 -18.57413 -17.37198 -17.23319 -16.96208 -16.47698 -16.11596 -15.88934 -15.24953 -15.09036 -15.00363 -14.71266 -14.16972 -13.90034 -13.71109 -13.55321 -13.44997 -13.26879 -13.21454 -13.13394 -12.83875 -12.73879 -12.68831 -12.55075 -12.40361 -12.31561 -12.27510 -11.96582 -11.40169 -11.24722 -10.67035 -10.63274 -10.25041 -10.18776 -9.75244 -8.27854 -6.41771 -1.41607 -0.29188 0.17579 0.24856 1.30967 1.39876 1.44190 1.54529 1.80101 2.16574 2.38747 2.95547 3.08295 3.14889 3.57225 3.69956 3.73753 3.85874 3.88665 3.94280 4.14000 4.19594 4.26681 4.45698 4.48091 4.49794 4.58501 4.71552 4.79692 4.91939 4.98760 5.02955 5.04580 5.11989 5.12892 5.37995 5.42066 5.44414 5.72986 6.02283 6.33046 6.39124 6.61327 6.85791 7.28707 7.39060 8.79016 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.004175 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.922607 B = 6704.928498 C = 7314.234110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.045 4.045 4 C -0.077 4.077 5 C -0.055 4.055 6 C -0.043 4.043 7 N 0.025 4.975 8 O -0.119 6.119 9 O -0.233 6.233 10 C -0.085 4.085 11 C 0.577 3.423 12 O -0.580 6.580 13 N -0.591 5.591 14 C 0.113 3.887 15 C -0.124 4.124 16 C 0.244 3.756 17 O -0.588 6.588 18 C -0.564 4.564 19 H 0.053 0.947 20 C 0.041 3.959 21 N -0.906 5.906 22 Si 0.960 3.040 23 H -0.276 1.276 24 H -0.275 1.275 25 H -0.277 1.277 26 C 0.128 3.872 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.037 0.963 30 H 0.199 0.801 31 H 0.208 0.792 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.066 0.934 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 19.738 -4.861 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.058 4.058 3 C -0.063 4.063 4 C -0.095 4.095 5 C -0.074 4.074 6 C -0.127 4.127 7 N 0.540 4.460 8 O -0.350 6.350 9 O -0.429 6.429 10 C -0.089 4.089 11 C 0.366 3.634 12 O -0.461 6.461 13 N -0.321 5.321 14 C -0.009 4.009 15 C -0.163 4.163 16 C 0.204 3.796 17 O -0.398 6.398 18 C -0.602 4.602 19 H 0.071 0.929 20 C -0.161 4.161 21 N -0.545 5.545 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.200 1.200 25 H -0.202 1.202 26 C 0.006 3.994 27 H 0.105 0.895 28 H 0.139 0.861 29 H 0.056 0.944 30 H 0.216 0.784 31 H 0.224 0.776 32 H 0.199 0.801 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.150 20.056 -5.927 22.445 hybrid contribution -0.162 -2.286 0.953 2.482 sum 7.988 17.770 -4.974 20.108 Atomic orbital electron populations 1.20987 0.88707 1.04217 1.04059 1.20322 0.97755 0.90411 0.97324 1.22079 0.94951 0.98015 0.91221 1.21994 0.93859 0.98297 0.95387 1.21549 1.03481 0.88538 0.93821 1.21400 0.90481 0.84166 1.16623 1.44030 1.01253 1.03716 0.97045 1.94405 0.95977 1.94333 1.50264 1.94707 1.70300 1.20178 1.57704 1.19730 0.91405 0.95282 1.02497 1.17895 0.78617 0.84255 0.82637 1.90739 1.57485 1.65920 1.31998 1.48394 1.54756 1.23157 1.05783 1.22077 0.98827 0.98528 0.81461 1.22963 0.98797 0.97225 0.97309 1.19628 0.82105 0.89384 0.88505 1.86098 1.41046 1.75731 1.36881 1.21689 1.44971 0.92610 1.00943 0.92863 1.25559 0.93534 1.00749 0.96256 1.69698 1.43582 1.29826 1.11403 0.85481 0.77975 0.79899 0.78102 1.20123 1.20008 1.20203 1.22189 0.93945 0.84883 0.98386 0.89496 0.86063 0.94419 0.78381 0.77552 0.80130 0.90308 0.92730 0.89919 0.92309 0.76862 0.91739 0.91571 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.62 71.24 0.69 -1.96 16 2 C -0.06 -1.22 5.91 -19.61 -0.12 -1.33 16 3 C -0.05 -0.44 9.69 22.23 0.22 -0.22 16 4 C -0.08 -0.58 10.04 22.33 0.22 -0.35 16 5 C -0.05 -0.88 9.55 22.23 0.21 -0.66 16 6 C -0.04 -1.22 6.88 36.63 0.25 -0.97 16 7 N 0.02 0.89 4.45 -45.85 -0.20 0.69 16 8 O -0.12 -3.87 18.45 18.89 0.35 -3.52 16 9 O -0.23 -10.38 16.26 22.42 0.36 -10.02 16 10 C -0.08 -2.67 4.81 -20.09 -0.10 -2.76 16 11 C 0.58 24.46 3.15 86.79 0.27 24.73 16 12 O -0.58 -29.16 17.25 4.03 0.07 -29.09 16 13 N -0.59 -25.61 3.20 -815.07 -2.61 -28.21 16 14 C 0.11 4.34 6.47 86.73 0.56 4.90 16 15 C -0.12 -5.51 5.50 31.78 0.17 -5.33 16 16 C 0.24 12.18 0.88 -10.15 -0.01 12.17 16 17 O -0.59 -29.97 13.17 -148.98 -1.96 -31.93 16 18 C -0.56 -30.41 8.25 25.60 0.21 -30.19 16 19 H 0.05 2.94 7.78 -2.91 -0.02 2.92 16 20 C 0.04 2.09 5.29 84.66 0.45 2.53 16 21 N -0.91 -45.95 10.76 21.45 0.23 -45.72 16 22 Si 0.96 41.69 29.54 68.60 2.03 43.71 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.13 6.31 6.08 86.84 0.53 6.84 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 1.51 8.09 -2.38 -0.02 1.50 16 29 H 0.04 1.13 7.08 -2.39 -0.02 1.12 16 30 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 31 H 0.21 -0.58 8.06 -2.91 -0.02 -0.61 16 32 H 0.18 1.99 7.61 -2.91 -0.02 1.97 16 33 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 3.69 7.68 -2.38 -0.02 3.67 16 36 H 0.06 2.70 8.03 -2.39 -0.02 2.68 16 37 H 0.38 19.28 7.26 -74.06 -0.54 18.75 16 38 H 0.27 13.08 8.31 -92.70 -0.77 12.31 16 39 H 0.07 3.34 8.03 -2.39 -0.02 3.32 16 40 H 0.05 2.71 8.04 -2.39 -0.02 2.70 16 Total: -1.00 -75.66 344.97 2.38 -73.28 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.55 Total: 23.43 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 3.56 Total: 7.38 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -2.58 Total: -73.25 kcal Atomic # 8 Polarization: -73.37 SS G_CDS: -1.18 Total: -74.55 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -75.66 2.38 -73.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.028 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds