Wall clock time and date at job start Tue Mar 31 2020 13:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46779 * 2 1 4 4 C 1.50699 * 109.47268 * 119.99896 * 2 1 3 5 5 H 1.07996 * 120.00153 * 119.99701 * 4 2 1 6 6 C 1.37880 * 119.99691 * 300.00137 * 4 2 1 7 7 N 1.31514 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99991 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46936 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47310 * 119.99927 * 8 6 4 11 11 H 1.48500 * 109.47258 * 240.00316 * 8 6 4 12 12 N 1.46505 * 109.47050 * 239.99859 * 2 1 3 13 13 C 1.46496 * 119.99944 * 299.99932 * 12 2 1 14 14 S 1.65598 * 119.99653 * 120.00010 * 12 2 1 15 15 O 1.42101 * 106.40043 * 203.53707 * 14 12 2 16 16 O 1.42094 * 106.40656 * 336.45924 * 14 12 2 17 17 N 1.65606 * 107.22028 * 90.00086 * 14 12 2 18 18 C 1.46494 * 119.99749 * 270.00003 * 17 14 12 19 19 C 1.46502 * 120.00085 * 89.99282 * 17 14 12 20 20 H 1.08997 * 112.84829 * 5.35502 * 19 17 14 21 21 C 1.53776 * 113.60999 * 136.66355 * 19 17 14 22 22 C 1.53783 * 87.08027 * 139.98254 * 21 19 17 23 23 H 1.09000 * 113.61549 * 89.11363 * 22 21 19 24 24 C 1.50702 * 113.68912 * 220.00639 * 22 21 19 25 25 O 1.20826 * 120.00056 * 97.53671 * 24 22 21 26 26 O 1.34235 * 120.00026 * 277.53452 * 24 22 21 27 27 C 1.53780 * 113.61252 * 234.15926 * 19 17 14 28 28 H 1.09001 * 109.47428 * 300.00015 * 1 2 3 29 29 H 1.09007 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47464 * 60.00357 * 1 2 3 31 31 H 0.97004 * 119.99575 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47452 * 90.00307 * 13 12 2 33 33 H 1.09008 * 109.46754 * 210.00214 * 13 12 2 34 34 H 1.09007 * 109.47238 * 329.99697 * 13 12 2 35 35 H 1.09003 * 109.47760 * 95.14412 * 18 17 14 36 36 H 1.09003 * 109.47082 * 215.14580 * 18 17 14 37 37 H 1.09004 * 109.47351 * 335.14451 * 18 17 14 38 38 H 1.09004 * 113.61403 * 254.53001 * 21 19 17 39 39 H 1.08993 * 113.61983 * 25.43300 * 21 19 17 40 40 H 0.96697 * 116.99620 * 180.02562 * 26 24 22 41 41 H 1.08998 * 113.61474 * 334.56975 * 27 19 17 42 42 H 1.08997 * 113.61083 * 105.39473 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.1454 -2.2876 3.6038 10 1 3.1465 -0.1872 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5438 -0.1042 -1.8180 18 6 5.1724 0.8458 -0.8969 19 6 5.3069 -1.2475 -2.3248 20 1 4.7598 -1.8245 -3.0703 21 6 6.7411 -0.8909 -2.7498 22 6 7.1761 -2.2226 -2.1156 23 1 7.1413 -3.0664 -2.8047 24 6 8.4775 -2.1370 -1.3604 25 8 8.4715 -1.9930 -0.1608 26 8 9.6433 -2.2208 -2.0205 27 6 5.9336 -2.1098 -1.2165 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 0.7080 1.1609 3.4843 32 1 0.7376 -2.1445 -1.9993 33 1 2.4629 -2.5819 -1.9863 34 1 1.5295 -2.5969 -0.4707 35 1 5.0920 0.4703 0.1232 36 1 6.2239 0.9641 -1.1587 37 1 4.6692 1.8099 -0.9699 38 1 6.8804 -0.8558 -3.8304 39 1 7.1419 -0.0138 -2.2418 40 1 10.4516 -2.1610 -1.4931 41 1 6.1135 -1.5659 -0.2892 42 1 5.4201 -3.0581 -1.0582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600658383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:43 Heat of formation + Delta-G solvation = -137.407671 kcal Electronic energy + Delta-G solvation = -26938.502558 eV Core-core repulsion = 23046.664767 eV Total energy + Delta-G solvation = -3891.837791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85653 -38.76836 -36.76432 -36.23589 -36.12942 -35.28428 -33.98628 -32.59845 -29.08708 -27.49180 -25.91115 -25.58648 -25.45406 -25.17868 -21.80865 -20.71364 -19.36257 -18.83198 -18.12857 -17.49411 -16.90985 -16.74467 -16.34929 -16.05448 -15.48599 -15.05048 -14.76968 -14.28468 -13.98731 -13.49819 -13.31442 -13.12502 -12.78239 -12.70575 -12.34269 -12.12470 -12.00532 -11.97916 -11.79672 -11.66391 -11.41248 -11.31254 -11.21807 -11.15341 -11.04143 -10.95947 -10.86810 -10.78183 -10.43587 -10.39914 -10.21464 -10.07079 -9.29353 -8.71539 -8.48787 -7.95154 -6.09865 -4.18060 1.17548 2.02210 2.84884 3.24090 3.33075 3.34974 3.42770 4.03450 4.19959 4.30835 4.35759 4.67848 4.68772 4.86411 5.12362 5.18404 5.21045 5.45235 5.49460 5.57930 5.63209 5.72539 5.84051 5.96878 6.06947 6.17003 6.26821 6.28566 6.31651 6.47667 6.64188 6.77684 6.87398 6.92122 7.11791 7.48837 7.62526 7.72490 7.77633 8.04604 8.25703 8.85643 9.48586 10.95113 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.005424 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.012454 B = 5160.802258 C = 6654.372841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.779 3.221 15 O -0.997 6.997 16 O -0.978 6.978 17 N -0.996 5.996 18 C 0.084 3.916 19 C 0.131 3.869 20 H 0.127 0.873 21 C -0.131 4.131 22 C -0.111 4.111 23 H 0.127 0.873 24 C 0.488 3.512 25 O -0.509 6.509 26 O -0.518 6.518 27 C -0.130 4.130 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.011 0.989 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.407 0.593 41 H 0.108 0.892 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.185 -5.847 -9.384 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.790 3.210 15 O -0.981 6.981 16 O -0.962 6.962 17 N -0.831 5.831 18 C -0.061 4.061 19 C 0.023 3.977 20 H 0.144 0.856 21 C -0.170 4.170 22 C -0.131 4.131 23 H 0.145 0.855 24 C 0.330 3.670 25 O -0.396 6.396 26 O -0.330 6.330 27 C -0.170 4.170 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.416 -5.175 -9.894 15.969 hybrid contribution 1.089 -0.746 1.733 2.178 sum 12.505 -5.921 -8.162 16.064 Atomic orbital electron populations 1.22055 0.98010 0.99639 1.00722 1.18730 0.91844 0.92701 0.80264 0.92422 1.21401 1.31696 1.13079 0.90059 0.91816 1.24911 0.94948 0.94956 0.98956 1.69892 1.36268 1.22669 1.23673 0.86513 0.78602 0.79708 0.82987 1.19759 1.21004 1.21047 1.57756 1.64205 1.21357 1.39821 1.21166 0.98802 0.82078 1.01807 1.01937 0.72431 0.73456 0.73168 1.93519 1.85980 1.76360 1.42275 1.93568 1.83598 1.32244 1.86805 1.57864 1.30677 1.34512 1.60094 1.21558 0.98447 0.92610 0.93475 1.22231 0.91599 0.87572 0.96283 0.85560 1.23376 0.96178 0.95542 1.01892 1.22362 0.88588 1.01992 1.00154 0.85467 1.23349 0.85530 0.71640 0.86469 1.90751 1.87848 1.44776 1.16198 1.84559 1.17175 1.85087 1.46172 1.23492 0.92523 1.01822 0.99139 0.88913 0.94896 0.96954 0.92723 0.93947 0.93376 0.90205 0.91590 0.91845 0.89699 0.89450 0.88567 0.73450 0.87406 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.41 2.62 -69.08 -0.18 6.23 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.12 7.99 -34.44 -0.28 -13.39 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.99 -20.06 3.12 -115.85 -0.36 -20.43 16 13 C 0.11 1.87 9.28 59.84 0.56 2.43 16 14 S 2.78 53.40 6.06 -107.50 -0.65 52.75 16 15 O -1.00 -19.51 15.86 -57.17 -0.91 -20.42 16 16 O -0.98 -21.86 15.25 -57.17 -0.87 -22.74 16 17 N -1.00 -15.63 3.46 -113.74 -0.39 -16.02 16 18 C 0.08 1.27 9.76 59.84 0.58 1.86 16 19 C 0.13 1.64 4.28 -67.12 -0.29 1.35 16 20 H 0.13 1.50 7.11 -51.93 -0.37 1.13 16 21 C -0.13 -1.32 7.15 -25.92 -0.19 -1.50 16 22 C -0.11 -1.08 4.26 -90.96 -0.39 -1.46 16 23 H 0.13 0.92 8.14 -51.93 -0.42 0.49 16 24 C 0.49 5.32 7.86 36.01 0.28 5.60 16 25 O -0.51 -7.37 16.66 -18.75 -0.31 -7.68 16 26 O -0.52 -4.24 13.42 -39.27 -0.53 -4.76 16 27 C -0.13 -1.57 7.00 -25.92 -0.18 -1.75 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.70 7.79 -51.92 -0.40 0.30 16 34 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 35 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 36 H 0.06 0.77 5.85 -51.93 -0.30 0.47 16 37 H 0.08 1.37 6.91 -51.93 -0.36 1.01 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.99 5.91 -51.93 -0.31 0.69 16 40 H 0.41 1.72 9.10 45.56 0.41 2.13 16 41 H 0.11 1.54 6.64 -51.93 -0.35 1.20 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -32.79 351.79 -8.11 -40.91 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.16 Total: 3.34 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 0.16 Total: -2.13 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.13 Total: -59.92 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -2.62 Total: -55.60 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 53.40 SS G_CDS: -0.65 Total: 52.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.79 -8.11 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600658383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.502 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds