Wall clock time and date at job start Tue Mar 31 2020 12:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31726 * 119.73477 * 2 1 4 4 C 1.32528 * 121.65314 * 180.26630 * 3 2 1 5 5 N 1.38645 * 119.53791 * 179.70719 * 4 3 2 6 6 C 1.46957 * 111.00062 * 295.62707 * 5 4 3 7 7 C 1.53057 * 109.36608 * 183.18622 * 6 5 4 8 8 N 1.46955 * 109.36453 * 301.60468 * 7 6 5 9 9 C 1.46896 * 111.00136 * 183.18905 * 8 7 6 10 10 C 1.50697 * 109.47354 * 170.00052 * 9 8 7 11 11 H 1.07998 * 120.00118 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99842 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00342 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99884 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46888 * 59.99708 * 14 12 10 16 16 H 1.48496 * 109.47218 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47319 * 300.00372 * 14 12 10 18 18 C 1.46957 * 110.88434 * 59.31604 * 8 7 6 19 19 C 1.46958 * 110.99819 * 59.42716 * 5 4 3 20 20 C 1.39466 * 120.92512 * 359.43712 * 4 3 2 21 21 Cl 1.73599 * 120.31894 * 180.25221 * 20 4 3 22 22 C 1.36969 * 119.36272 * 0.27188 * 20 4 3 23 23 C 1.39567 * 119.73046 * 179.70479 * 2 1 3 24 24 C 1.43200 * 120.47691 * 0.02562 * 23 2 1 25 25 N 3.48974 * 80.36984 * 179.70487 * 2 1 3 26 26 H 1.08999 * 109.46828 * 270.29520 * 1 2 3 27 27 H 1.09002 * 109.47145 * 30.29508 * 1 2 3 28 28 H 1.08995 * 109.47118 * 150.29963 * 1 2 3 29 29 H 1.09005 * 109.48635 * 63.22133 * 6 5 4 30 30 H 1.09002 * 109.50943 * 303.16879 * 6 5 4 31 31 H 1.08990 * 109.48733 * 181.63585 * 7 6 5 32 32 H 1.08998 * 109.48382 * 61.56852 * 7 6 5 33 33 H 1.09000 * 109.46986 * 289.99932 * 9 8 7 34 34 H 1.08997 * 109.47574 * 49.99710 * 9 8 7 35 35 H 0.97003 * 120.00472 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.48886 * 60.64332 * 18 8 7 37 37 H 1.08998 * 109.48922 * 180.71296 * 18 8 7 38 38 H 1.08989 * 109.49225 * 296.77812 * 19 5 4 39 39 H 1.09000 * 109.48688 * 56.82427 * 19 5 4 40 40 H 1.07992 * 120.76369 * 180.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1604 1.1438 0.0000 4 6 3.4850 1.1882 -0.0052 5 7 4.1277 2.4166 -0.0112 6 6 3.8413 3.1549 -1.2491 7 6 4.6301 4.4665 -1.2519 8 7 4.2606 5.2599 -0.0714 9 6 4.9415 6.5615 -0.0777 10 6 4.3598 7.4380 1.0014 11 1 3.5636 7.0655 1.6288 12 6 4.8441 8.7154 1.1876 13 7 5.8140 9.1688 0.4240 14 14 4.1226 9.8021 2.5248 15 1 4.3098 9.1511 3.8464 16 1 4.8119 11.1174 2.5193 17 1 2.6728 10.0013 2.2722 18 6 4.5470 4.5216 1.1665 19 6 3.7581 3.2101 1.1693 20 6 4.2414 0.0165 0.0008 21 17 5.9757 0.0930 0.0003 22 6 3.6027 -1.1952 0.0066 23 6 2.1992 -1.2119 0.0062 24 6 1.4877 -2.4547 0.0121 25 7 0.9233 -3.4405 0.0177 26 1 -0.3633 0.0053 1.0277 27 1 -0.3633 0.8873 -0.5184 28 1 -0.3633 -0.8926 -0.5091 29 1 2.7745 3.3720 -1.3045 30 1 4.1348 2.5522 -2.1086 31 1 4.3969 5.0292 -2.1558 32 1 5.6978 4.2487 -1.2240 33 1 6.0058 6.4157 0.1071 34 1 4.8033 7.0393 -1.0476 35 1 6.1550 10.0674 0.5553 36 1 5.6137 4.3044 1.2219 37 1 4.2532 5.1246 2.0257 38 1 2.6905 3.4278 1.1414 39 1 3.9909 2.6472 2.0732 40 1 4.1661 -2.1165 0.0117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:39 Heat of formation + Delta-G solvation = 62.569984 kcal Electronic energy + Delta-G solvation = -23977.265497 eV Core-core repulsion = 20431.657353 eV Total energy + Delta-G solvation = -3545.608145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13464 -40.00747 -38.00491 -37.55203 -36.66299 -34.64126 -34.10699 -32.78867 -31.92459 -29.85157 -28.79082 -27.10166 -24.81764 -24.44635 -23.52157 -23.17978 -20.75412 -20.31656 -18.59658 -18.42525 -18.12786 -16.72428 -16.59038 -15.97470 -15.84359 -15.68586 -15.62603 -15.39922 -15.05110 -14.66796 -14.40998 -14.35400 -14.24582 -13.93360 -13.86513 -13.59781 -13.39020 -13.25269 -13.04071 -12.79803 -12.65731 -12.47506 -12.26694 -12.13762 -12.09112 -12.06164 -11.60959 -11.23609 -10.95654 -10.92616 -10.58007 -9.85267 -9.76768 -9.00257 -8.17194 -6.27028 -0.80355 -0.14685 0.95950 1.43969 1.46761 1.51425 1.54534 1.64743 2.33225 2.43025 2.50612 2.62215 3.07416 3.15226 3.30478 3.36979 3.68672 3.91784 3.98737 4.16894 4.28672 4.31537 4.39786 4.45842 4.49697 4.63052 4.64083 4.71456 4.79395 4.83584 4.98119 5.04362 5.06578 5.19659 5.25967 5.31256 5.66058 5.70190 6.01493 6.08548 6.24964 6.35198 6.55605 6.64386 6.88709 7.42588 8.93673 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002993 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.273442 B = 9353.375737 C =10100.138096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.198 3.802 3 N -0.507 5.507 4 C 0.338 3.662 5 N -0.491 5.491 6 C 0.081 3.919 7 C 0.058 3.942 8 N -0.544 5.544 9 C 0.211 3.789 10 C -0.522 4.522 11 H 0.064 0.936 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.269 1.269 18 C 0.073 3.927 19 C 0.080 3.920 20 C -0.075 4.075 21 Cl -0.028 7.028 22 C 0.002 3.998 23 C -0.076 4.076 24 C 0.287 3.713 25 N -0.434 5.434 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.028 0.972 33 H -0.038 1.038 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -22.643 -1.204 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.056 3.944 3 N -0.220 5.220 4 C 0.108 3.892 5 N -0.215 5.215 6 C -0.045 4.045 7 C -0.071 4.071 8 N -0.269 5.269 9 C 0.084 3.916 10 C -0.560 4.560 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.792 3.208 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.194 1.194 18 C -0.056 4.056 19 C -0.046 4.046 20 C -0.106 4.106 21 Cl 0.001 6.999 22 C -0.026 4.026 23 C -0.082 4.082 24 C -0.029 4.029 25 N -0.110 5.110 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.046 0.954 33 H -0.020 1.020 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.952 -23.199 -1.232 24.249 hybrid contribution 1.066 0.783 0.427 1.390 sum -5.885 -22.416 -0.805 23.190 Atomic orbital electron populations 1.20970 0.86145 1.04819 1.05064 1.21695 0.98143 0.85676 0.88898 1.68037 1.09023 1.29664 1.15288 1.19983 0.86622 0.91541 0.91033 1.60341 1.54288 1.02055 1.04769 1.22085 0.99147 0.92954 0.90348 1.22117 0.97279 0.93364 0.94300 1.62209 1.58776 1.03819 1.02098 1.19324 0.90309 0.85821 0.96101 1.21425 1.19112 0.98554 1.16945 0.91792 1.25889 0.95386 0.99465 0.98842 1.70074 1.28327 1.18190 1.40918 0.85469 0.78601 0.77455 0.79289 1.19151 1.21056 1.19373 1.21937 0.97031 0.92998 0.93626 1.22093 0.98710 0.92339 0.91489 1.21190 0.87823 0.93435 1.08149 1.98416 1.06164 1.98660 1.96623 1.21461 0.92005 0.98368 0.90796 1.16636 0.92132 0.87743 1.11696 1.24965 0.92923 0.91940 0.93076 1.81343 1.08880 1.11245 1.09492 0.88006 0.88953 0.89611 0.92918 0.88758 0.90491 0.95369 1.01996 0.97704 0.92739 0.95950 0.90803 0.92883 0.89267 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.78 71.24 0.70 -0.63 16 2 C 0.20 3.18 6.82 42.90 0.29 3.47 16 3 N -0.51 -10.79 9.51 -180.25 -1.71 -12.50 16 4 C 0.34 7.49 5.32 133.23 0.71 8.20 16 5 N -0.49 -13.03 4.06 -701.26 -2.84 -15.87 16 6 C 0.08 2.24 5.45 86.31 0.47 2.71 16 7 C 0.06 2.02 5.61 86.31 0.48 2.50 16 8 N -0.54 -23.06 4.70 -900.30 -4.23 -27.29 16 9 C 0.21 11.12 4.72 85.56 0.40 11.52 16 10 C -0.52 -29.17 8.47 25.60 0.22 -28.96 16 11 H 0.06 3.48 7.13 -2.91 -0.02 3.46 16 12 C 0.00 0.12 5.46 84.66 0.46 0.59 16 13 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 14 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 C 0.07 2.74 5.43 86.31 0.47 3.21 16 19 C 0.08 2.36 5.41 86.31 0.47 2.83 16 20 C -0.08 -1.34 6.32 22.27 0.14 -1.20 16 21 Cl -0.03 -0.53 28.44 -2.72 -0.08 -0.61 16 22 C 0.00 0.02 9.63 22.49 0.22 0.24 16 23 C -0.08 -1.05 5.75 -21.20 -0.12 -1.17 16 24 C 0.29 4.32 13.82 88.33 1.22 5.54 16 25 N -0.43 -8.38 18.54 19.00 0.35 -8.02 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 0.86 7.08 -2.39 -0.02 0.84 16 29 H 0.05 1.54 7.99 -2.38 -0.02 1.52 16 30 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 31 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 34 H 0.00 0.28 8.03 -2.39 -0.02 0.26 16 35 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 3.01 6.79 -2.39 -0.02 2.99 16 38 H 0.05 1.65 7.91 -2.39 -0.02 1.63 16 39 H 0.09 2.31 8.13 -2.39 -0.02 2.29 16 40 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -65.23 353.69 0.98 -64.24 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.06 Total: 1.07 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.13 Total: 8.84 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -8.15 Total: -119.37 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -65.23 0.98 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.812 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds